>BRO1_USTMA (Q4PHA8) Vacuolar protein-sorting protein BRO1 (BRO|
           domain-containing protein 1)
          Length = 1076

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -1

Query: 516 GAGPLGPFIPAPPEVAMRMLRE--QGGPPP 433
           GAG  GP  P PP  A+  +R+    GPPP
Sbjct: 831 GAGAPGPLSPGPPPAALPGVRQTSNSGPPP 860

>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor|
           65 kDa subunit) (U2 snRNP auxiliary factor large
           subunit)
          Length = 475

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -1

Query: 330 HDPRMQDPRMQDPRKIRSYQDLDAPG-DEVTVLDYRSL*ACAVRP 199
           H   ++ PR +  +K+R Y D+  PG + +T + Y+++ A    P
Sbjct: 73  HGGLIRSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIP 117

>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor|
           65 kDa subunit) (U2 snRNP auxiliary factor large
           subunit) (hU2AF(65))
          Length = 475

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -1

Query: 330 HDPRMQDPRMQDPRKIRSYQDLDAPG-DEVTVLDYRSL*ACAVRP 199
           H   ++ PR +  +K+R Y D+  PG + +T + Y+++ A    P
Sbjct: 73  HGGLIRSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIP 117

>KNS1_YEAST (P32350) Dual specificity protein kinase KNS1 (EC 2.7.12.1)|
          Length = 737

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 74  FEKIKNSVGNTPSACYSTTVKLLDISKVPLRW 169
           F K K+ +GN+PS   ST +K  D   + L+W
Sbjct: 573 FYKSKHKLGNSPSDLNSTVIKHFDRKTLSLQW 604

>DSX_DROME (P23023) Protein doublesex|
          Length = 549

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 20/47 (42%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
 Frame = +2

Query: 419 AFGSKGGGPPCSLSIRIATS-------GGAGINGPSGPAPGTGISIG 538
           A  S GGG P S +   ATS       GG G  G SG   G G S G
Sbjct: 248 ATSSSGGGAPSSSNAAAATSSNGSSGGGGGGGGGSSGGGAGGGRSSG 294

>CO1A2_ONCMY (O93484) Collagen alpha-2(I) chain precursor|
          Length = 1356

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +2

Query: 479 GGAGINGPSGPAPGTG 526
           GGAG NGPSGP  G G
Sbjct: 262 GGAGSNGPSGPQGGRG 277

>ALX3_MOUSE (O70137) Homeobox protein aristaless-like 3 (Proline-rich|
           transcription factor ALX3)
          Length = 343

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 537 PMLMPVPGAGPLGPFIPAPPEVAMRMLREQGGPP 436
           P L   P  GPL P++P P +   + L++ G  P
Sbjct: 46  PRLSRFPACGPLEPYLPEPAKPPAKYLQDLGPGP 79

>ALX3_HUMAN (O95076) Homeobox protein aristaless-like 3 (Proline-rich|
           transcription factor ALX3)
          Length = 343

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 537 PMLMPVPGAGPLGPFIPAPPEVAMRMLREQGGPP 436
           P L   P  GPL P++P P +   + L++ G  P
Sbjct: 46  PRLTRFPACGPLEPYLPEPAKPPAKYLQDLGPGP 79


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,443,488
Number of Sequences: 219361
Number of extensions: 2020353
Number of successful extensions: 6778
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6680
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4258037034
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)