ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags17a11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UC25_MAIZE (P80631) Unknown protein from 2D-PAGE of etiolated co... 30 5.4
2IRK1_CAEEL (P52192) Inward rectifier potassium channel irk-1 29 7.1

>UC25_MAIZE (P80631) Unknown protein from 2D-PAGE of etiolated coleoptile (Spot|
           77) (Fragment)
          Length = 15

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = -2

Query: 497 ALGGLSRSFPVEAXE 453
           A+GGLSRSFPVEA E
Sbjct: 1   AIGGLSRSFPVEAFE 15



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>IRK1_CAEEL (P52192) Inward rectifier potassium channel irk-1|
          Length = 505

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +2

Query: 158 NRSCDVPPLPTPSPISY 208
           NRS D  PLP+PSP SY
Sbjct: 417 NRSSDSTPLPSPSPYSY 433


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,192,564
Number of Sequences: 219361
Number of extensions: 622100
Number of successful extensions: 2106
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2105
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4085413911
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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