ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags16k21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_467970.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.018
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.018
3dbj|AP005287.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.018
4dbj|AK069611.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.018
5dbj|AB016065.1| Oryza sativa (japonica cultivar-group) mRNA for ... 48 0.018
6emb|AL139097.16| Human DNA sequence from clone RP1-125E8 on chro... 44 0.28
7emb|AL592144.5| Human DNA sequence from clone RP11-476B1 on chro... 42 1.1
8emb|AL662896.9| Human DNA sequence from clone RP13-218H24 on chr... 40 4.3
9emb|AL512655.17| Human DNA sequence from clone RP11-536C2 on chr... 40 4.3
10emb|AL391883.17| Human DNA sequence from clone RP11-91K11 on chr... 40 4.3
11gb|AC022203.4|AC022203 Homo sapiens BAC clone RP11-490K15 from 1... 40 4.3
12dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
13gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.3
14emb|AL928758.3|CNS08CBV Oryza sativa chromosome 12, . BAC OSJNBb... 40 4.3

>ref|XM_467970.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1612

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 14   tcaagcatcaaactttcccggggg 37
            ||||||||||||||||||||||||
Sbjct: 1476 tcaagcatcaaactttcccggggg 1453



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                        
Query: 14       tcaagcatcaaactttcccggggg 37
                ||||||||||||||||||||||||
Sbjct: 32338016 tcaagcatcaaactttcccggggg 32338039



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>dbj|AP005287.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1004_A11
          Length = 132352

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 14     tcaagcatcaaactttcccggggg 37
              ||||||||||||||||||||||||
Sbjct: 113848 tcaagcatcaaactttcccggggg 113871



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>dbj|AK069611.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022H13, full
            insert sequence
          Length = 1612

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 14   tcaagcatcaaactttcccggggg 37
            ||||||||||||||||||||||||
Sbjct: 1476 tcaagcatcaaactttcccggggg 1453



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>dbj|AB016065.1| Oryza sativa (japonica cultivar-group) mRNA for mitochondrial
            phosphate transporter, complete cds
          Length = 1552

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 14   tcaagcatcaaactttcccggggg 37
            ||||||||||||||||||||||||
Sbjct: 1441 tcaagcatcaaactttcccggggg 1418



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>emb|AL139097.16| Human DNA sequence from clone RP1-125E8 on chromosome 6, complete
             sequence
          Length = 112533

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 194   cagcaaaaatcaatcaagctgg 215
             ||||||||||||||||||||||
Sbjct: 95794 cagcaaaaatcaatcaagctgg 95773



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>emb|AL592144.5| Human DNA sequence from clone RP11-476B1 on chromosome 1 Contains a novel
              gene, complete sequence
          Length = 197322

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 188    tcatagcagcaaaaatcaatc 208
              |||||||||||||||||||||
Sbjct: 120427 tcatagcagcaaaaatcaatc 120447



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>emb|AL662896.9| Human DNA sequence from clone RP13-218H24 on chromosome X Contains the
             gene for a novel protein, complete sequence
          Length = 86097

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   agattttgggtgctaaacaa 137
             ||||||||||||||||||||
Sbjct: 22615 agattttgggtgctaaacaa 22634



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>emb|AL512655.17| Human DNA sequence from clone RP11-536C2 on chromosome 13, complete
             sequence
          Length = 146002

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 194   cagcaaaaatcaatcaagct 213
             ||||||||||||||||||||
Sbjct: 78085 cagcaaaaatcaatcaagct 78104



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>emb|AL391883.17| Human DNA sequence from clone RP11-91K11 on chromosome 1 Contains the
             5' end of the gene for a novel protein (LOC255104), the
             gene for a novel protein (FLJ20225), a novel gene and the
             5' end of the gene for a novel protein (KIAA0459),
             complete sequence
          Length = 126371

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 131   taaacaagtaactgatacag 150
             ||||||||||||||||||||
Sbjct: 12170 taaacaagtaactgatacag 12151



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>gb|AC022203.4|AC022203 Homo sapiens BAC clone RP11-490K15 from 13, complete sequence
          Length = 177088

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   cagcaaaaatcaatcaagct 213
             ||||||||||||||||||||
Sbjct: 13776 cagcaaaaatcaatcaagct 13757



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 100     atctgctacaataacaaaag 119
               ||||||||||||||||||||
Sbjct: 2840215 atctgctacaataacaaaag 2840196



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 100     atctgctacaataacaaaag 119
               ||||||||||||||||||||
Sbjct: 2840159 atctgctacaataacaaaag 2840140



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>emb|AL928758.3|CNS08CBV Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 145539

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   atctgctacaataacaaaag 119
             ||||||||||||||||||||
Sbjct: 30232 atctgctacaataacaaaag 30251


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,723,748
Number of Sequences: 3902068
Number of extensions: 1723748
Number of successful extensions: 31413
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31374
Number of HSP's gapped (non-prelim): 39
length of query: 328
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 306
effective length of database: 17,147,199,772
effective search space: 5247043130232
effective search space used: 5247043130232
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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