| Clone Name | rbags16k21 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_467970.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1612 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Minus Query: 14 tcaagcatcaaactttcccggggg 37 |||||||||||||||||||||||| Sbjct: 1476 tcaagcatcaaactttcccggggg 1453
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Plus Query: 14 tcaagcatcaaactttcccggggg 37 |||||||||||||||||||||||| Sbjct: 32338016 tcaagcatcaaactttcccggggg 32338039
>dbj|AP005287.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_A11 Length = 132352 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Plus Query: 14 tcaagcatcaaactttcccggggg 37 |||||||||||||||||||||||| Sbjct: 113848 tcaagcatcaaactttcccggggg 113871
>dbj|AK069611.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022H13, full insert sequence Length = 1612 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Minus Query: 14 tcaagcatcaaactttcccggggg 37 |||||||||||||||||||||||| Sbjct: 1476 tcaagcatcaaactttcccggggg 1453
>dbj|AB016065.1| Oryza sativa (japonica cultivar-group) mRNA for mitochondrial phosphate transporter, complete cds Length = 1552 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Minus Query: 14 tcaagcatcaaactttcccggggg 37 |||||||||||||||||||||||| Sbjct: 1441 tcaagcatcaaactttcccggggg 1418
>emb|AL139097.16| Human DNA sequence from clone RP1-125E8 on chromosome 6, complete sequence Length = 112533 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 194 cagcaaaaatcaatcaagctgg 215 |||||||||||||||||||||| Sbjct: 95794 cagcaaaaatcaatcaagctgg 95773
>emb|AL592144.5| Human DNA sequence from clone RP11-476B1 on chromosome 1 Contains a novel gene, complete sequence Length = 197322 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 188 tcatagcagcaaaaatcaatc 208 ||||||||||||||||||||| Sbjct: 120427 tcatagcagcaaaaatcaatc 120447
>emb|AL662896.9| Human DNA sequence from clone RP13-218H24 on chromosome X Contains the gene for a novel protein, complete sequence Length = 86097 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 agattttgggtgctaaacaa 137 |||||||||||||||||||| Sbjct: 22615 agattttgggtgctaaacaa 22634
>emb|AL512655.17| Human DNA sequence from clone RP11-536C2 on chromosome 13, complete sequence Length = 146002 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 cagcaaaaatcaatcaagct 213 |||||||||||||||||||| Sbjct: 78085 cagcaaaaatcaatcaagct 78104
>emb|AL391883.17| Human DNA sequence from clone RP11-91K11 on chromosome 1 Contains the 5' end of the gene for a novel protein (LOC255104), the gene for a novel protein (FLJ20225), a novel gene and the 5' end of the gene for a novel protein (KIAA0459), complete sequence Length = 126371 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 taaacaagtaactgatacag 150 |||||||||||||||||||| Sbjct: 12170 taaacaagtaactgatacag 12151
>gb|AC022203.4|AC022203 Homo sapiens BAC clone RP11-490K15 from 13, complete sequence Length = 177088 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 cagcaaaaatcaatcaagct 213 |||||||||||||||||||| Sbjct: 13776 cagcaaaaatcaatcaagct 13757
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 atctgctacaataacaaaag 119 |||||||||||||||||||| Sbjct: 2840215 atctgctacaataacaaaag 2840196
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 atctgctacaataacaaaag 119 |||||||||||||||||||| Sbjct: 2840159 atctgctacaataacaaaag 2840140
>emb|AL928758.3|CNS08CBV Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145539 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 atctgctacaataacaaaag 119 |||||||||||||||||||| Sbjct: 30232 atctgctacaataacaaaag 30251 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,723,748 Number of Sequences: 3902068 Number of extensions: 1723748 Number of successful extensions: 31413 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31374 Number of HSP's gapped (non-prelim): 39 length of query: 328 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 306 effective length of database: 17,147,199,772 effective search space: 5247043130232 effective search space used: 5247043130232 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)