>emb|AL137018.9| Human DNA sequence from clone RP11-133M9 on chromosome 9q13-21.33
             Contains the 3' end of the RORB gene for RAR-related
             orphan receptor B protein (RZRB, ROR-BETA), complete
             sequence
          Length = 157168

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 250   tcatcttcagagaagtcatcat 271
             ||||||||||||||||||||||
Sbjct: 14491 tcatcttcagagaagtcatcat 14512

>ref|XM_467311.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4578

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                            
Query: 463  ccgctcttcttgttgaagggggagtncctgatccttcgcaccttcttc 510
            ||||||||||||| |||||| |||  ||| ||| | ||||||||||||
Sbjct: 4340 ccgctcttcttgtggaagggagaggccctcatcttgcgcaccttcttc 4293

>gb|AY091599.1| Infectious salmon anemia virus isolate RPC/NB 980280-2
           nucleoprotein mRNA, complete cds
          Length = 1851

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 306 ctcatcatcttcactcccgga 326
           |||||||||||||||||||||
Sbjct: 827 ctcatcatcttcactcccgga 807

>gb|AF404345.1|AF404345 Infectious salmon anemia virus segment 3 putative nucleocapsid
           protein (NP) gene, complete cds
          Length = 2046

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 306 ctcatcatcttcactcccgga 326
           |||||||||||||||||||||
Sbjct: 875 ctcatcatcttcactcccgga 855

>gb|AF306549.1|AF306549 Infectious salmon anemia virus putative nucleoprotein mRNA,
           complete cds
          Length = 2042

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 306 ctcatcatcttcactcccgga 326
           |||||||||||||||||||||
Sbjct: 886 ctcatcatcttcactcccgga 866

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                                
Query: 463      ccgctcttcttgttgaagggggagtncctgatccttcgcaccttcttc 510
                ||||||||||||| |||||| |||  ||| ||| | ||||||||||||
Sbjct: 28796359 ccgctcttcttgtggaagggagaggccctcatcttgcgcaccttcttc 28796406



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 138      acgacgcacaagagatgcacctgagcaa 165
                ||||||||||||||||||| || |||||
Sbjct: 28795974 acgacgcacaagagatgcatctcagcaa 28796001

>gb|AC157020.8| Mus musculus 10 BAC RP24-459C13 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 183687

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 4     aactagagattaaaatccaca 24
             |||||||||||||||||||||
Sbjct: 89555 aactagagattaaaatccaca 89535

>gb|AC091530.4| Papio anubis clone RP41-444A14, complete sequence
          Length = 162413

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 13     ttaaaatccacactttaagct 33
              |||||||||||||||||||||
Sbjct: 141830 ttaaaatccacactttaagct 141810

>dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0459B01
          Length = 163087

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                              
Query: 463    ccgctcttcttgttgaagggggagtncctgatccttcgcaccttcttc 510
              ||||||||||||| |||||| |||  ||| ||| | ||||||||||||
Sbjct: 112932 ccgctcttcttgtggaagggagaggccctcatcttgcgcaccttcttc 112979



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 138    acgacgcacaagagatgcacctgagcaa 165
              ||||||||||||||||||| || |||||
Sbjct: 112547 acgacgcacaagagatgcatctcagcaa 112574

>dbj|AK063335.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-A06, full
            insert sequence
          Length = 2524

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                            
Query: 463  ccgctcttcttgttgaagggggagtncctgatccttcgcaccttcttc 510
            ||||||||||||| |||||| |||  ||| ||| | ||||||||||||
Sbjct: 2084 ccgctcttcttgtggaagggagaggccctcatcttgcgcaccttcttc 2037



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 138  acgacgcacaagagatgcacctgagcaa 165
            ||||||||||||||||||| || |||||
Sbjct: 2469 acgacgcacaagagatgcatctcagcaa 2442

>gb|AY109977.1| Zea mays CL3228_1 mRNA sequence
          Length = 990

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                           
Query: 463 ccgctcttcttgttgaagggggagtncctgatccttcgcaccttcttc 510
           |||||||||||||||||||| |||  ||| ||| | || |||||||||
Sbjct: 360 ccgctcttcttgttgaagggagaggacctcatcttccggaccttcttc 407



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 377 caactggctcagcagagctgccggaggg 404
           |||||||||| ||||||||||| |||||
Sbjct: 268 caactggctctgcagagctgccagaggg 295

>ref|NM_128450.1| Arabidopsis thaliana CXIP4 (CAX INTERACTING PROTEIN 4); nucleic
           acid binding AT2G28910 (CXIP4) mRNA, complete cds
          Length = 1345

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 290 catcttcatnctcagactcatca 312
           ||||||||| |||||||||||||
Sbjct: 885 catcttcatcctcagactcatca 863

>gb|AF198097.2| Homo sapiens chromosome X multiple clones map p11.23, complete
            sequence
          Length = 69522

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 405  aggagcctcatcatcttntacccctgt 431
            ||||||||||||||||| ||| |||||
Sbjct: 4095 aggagcctcatcatcttgtactcctgt 4069

>gb|AY207461.1|AY207460S2 Mus musculus aldehyde reductase (Akr1a4) gene, exon 2
          Length = 2173

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 250 tcatcttcagagaagtcatc 269
           ||||||||||||||||||||
Sbjct: 778 tcatcttcagagaagtcatc 797

>gb|AY142061.1| Arabidopsis thaliana At2g28910/F8N16.20 mRNA, complete cds
          Length = 999

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 290 catcttcatnctcagactcatca 312
           ||||||||| |||||||||||||
Sbjct: 751 catcttcatcctcagactcatca 729

>gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 2, complete
              sequence
          Length = 1632307

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 93     caaaccgattagctcacaga 112
              ||||||||||||||||||||
Sbjct: 491498 caaaccgattagctcacaga 491517

>gb|AC005727.3| Arabidopsis thaliana chromosome 2 clone F8N16 map mi54, complete
             sequence
          Length = 107097

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 290   catcttcatnctcagactcatca 312
             ||||||||| |||||||||||||
Sbjct: 87424 catcttcatcctcagactcatca 87446

>gb|AF428457.1|AF428457 Arabidopsis thaliana At2g28910/F8N16.20 mRNA, complete cds
          Length = 1310

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 290 catcttcatnctcagactcatca 312
           ||||||||| |||||||||||||
Sbjct: 884 catcttcatcctcagactcatca 862

>gb|AC009869.7| Homo sapiens chromosome 11, clone RP11-222N13, complete sequence
          Length = 192696

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   tctctagacactagccactg 217
             ||||||||||||||||||||
Sbjct: 30552 tctctagacactagccactg 30533

>dbj|AK041753.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
           library, clone:A630035A22 product:unclassifiable, full
           insert sequence
          Length = 2301

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 233 tgagccaaggagtctagtca 252
           ||||||||||||||||||||
Sbjct: 313 tgagccaaggagtctagtca 332

>emb|AL929240.18| Mouse DNA sequence from clone RP23-245A10 on chromosome 2, complete
             sequence
          Length = 180092

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 233   tgagccaaggagtctagtca 252
             ||||||||||||||||||||
Sbjct: 43107 tgagccaaggagtctagtca 43088

>gb|AY163162.1| Arabidopsis thaliana CAX-interacting protein 4 mRNA, complete cds
          Length = 999

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 290 catcttcatnctcagactcatca 312
           ||||||||| |||||||||||||
Sbjct: 751 catcttcatcctcagactcatca 729

>gb|AY088773.1| Arabidopsis thaliana clone 948 mRNA, complete sequence
          Length = 1345

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 290 catcttcatnctcagactcatca 312
           ||||||||| |||||||||||||
Sbjct: 885 catcttcatcctcagactcatca 863

>gb|AF222686.1|AF222686 Homo sapiens chromosome X PAC K6166 map Xp11.23, complete sequence
          Length = 122181

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 405    aggagcctcatcatcttntacccctgt 431
              ||||||||||||||||| ||| |||||
Sbjct: 102153 aggagcctcatcatcttgtactcctgt 102127

>dbj|AP005060.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-637N19, complete
             sequence
          Length = 107942

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 232   ttgagccaaggagtctagtc 251
             ||||||||||||||||||||
Sbjct: 27605 ttgagccaaggagtctagtc 27624

>emb|AL831786.7| Mouse DNA sequence from clone RP23-177C18 on chromosome 4, complete
             sequence
          Length = 80871

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 250   tcatcttcagagaagtcatc 269
             ||||||||||||||||||||
Sbjct: 20396 tcatcttcagagaagtcatc 20377


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,640,601
Number of Sequences: 3902068
Number of extensions: 3640601
Number of successful extensions: 70788
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70728
Number of HSP's gapped (non-prelim): 60
length of query: 510
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 488
effective length of database: 17,147,199,772
effective search space: 8367833488736
effective search space used: 8367833488736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)