ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags16j22 |
|---|---|
| Clone Library Name | barley_pub |
>R10AA_ARATH (Q8VZB9) 60S ribosomal protein L10a-1| Length = 216 Score = 83.6 bits (205), Expect = 1e-16 Identities = 40/44 (90%), Positives = 41/44 (93%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVXRLF 174 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMG R+F Sbjct: 173 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216
>R10AC_ARATH (P59231) 60S ribosomal protein L10a-3| Length = 217 Score = 83.2 bits (204), Expect = 2e-16 Identities = 40/44 (90%), Positives = 41/44 (93%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVXRLF 174 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMG R+F Sbjct: 174 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPNRVF 217
>R10AB_ARATH (P59230) 60S ribosomal protein L10a-2| Length = 216 Score = 82.8 bits (203), Expect = 2e-16 Identities = 39/44 (88%), Positives = 41/44 (93%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVXRLF 174 MEEKQ+FQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMG R+F Sbjct: 173 MEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216
>RL10A_BRARE (Q6PC69) 60S ribosomal protein L10a| Length = 216 Score = 66.2 bits (160), Expect = 2e-11 Identities = 29/44 (65%), Positives = 37/44 (84%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVXRLF 174 M E+++ N+ ++VNFLVSLLKKNWQNVR LY+KSTMGK RL+ Sbjct: 173 MSEEELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 216
>RL10A_CHLRE (Q9SW75) 60S ribosomal protein L10a| Length = 213 Score = 65.9 bits (159), Expect = 3e-11 Identities = 29/44 (65%), Positives = 36/44 (81%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVXRLF 174 M E +I N+ ++NFLVSLLKKNWQNVRCLY+KSTMGK R++ Sbjct: 170 MTEGEIRTNIMYAINFLVSLLKKNWQNVRCLYIKSTMGKPIRIY 213
>RL10A_XENLA (Q7ZYS8) 60S ribosomal protein L10a| Length = 217 Score = 65.5 bits (158), Expect = 3e-11 Identities = 28/44 (63%), Positives = 37/44 (84%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVXRLF 174 + E+++ N+ +S+NFLVSLLKKNWQNVR LY+KSTMGK RL+ Sbjct: 174 LTEEELVYNIHLSINFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217
>RL10A_RAT (P62907) 60S ribosomal protein L10a| Length = 216 Score = 63.9 bits (154), Expect = 1e-10 Identities = 28/44 (63%), Positives = 36/44 (81%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVXRLF 174 M + ++ N+ ++VNFLVSLLKKNWQNVR LY+KSTMGK RL+ Sbjct: 173 MTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 216
>RL10A_MOUSE (P53026) 60S ribosomal protein L10a (CSA-19) (Protein NEDD6)| (Neural precursor cell expressed developmentally down-regulated protein 6) Length = 216 Score = 63.9 bits (154), Expect = 1e-10 Identities = 28/44 (63%), Positives = 36/44 (81%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVXRLF 174 M + ++ N+ ++VNFLVSLLKKNWQNVR LY+KSTMGK RL+ Sbjct: 173 MTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 216
>RL10A_MACFA (Q4R5P3) 60S ribosomal protein L10a| Length = 216 Score = 63.9 bits (154), Expect = 1e-10 Identities = 28/44 (63%), Positives = 36/44 (81%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVXRLF 174 M + ++ N+ ++VNFLVSLLKKNWQNVR LY+KSTMGK RL+ Sbjct: 173 MTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 216
>RL10A_ICTPU (Q90YV8) 60S ribosomal protein L10a| Length = 216 Score = 63.9 bits (154), Expect = 1e-10 Identities = 28/44 (63%), Positives = 36/44 (81%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVXRLF 174 M E ++ N+ ++VNFLVSLLKKNWQNVR LY+KS+MGK RL+ Sbjct: 173 MSEDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSSMGKPQRLY 216
>RL10A_HUMAN (P62906) 60S ribosomal protein L10a (CSA-19)| Length = 216 Score = 63.9 bits (154), Expect = 1e-10 Identities = 28/44 (63%), Positives = 36/44 (81%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVXRLF 174 M + ++ N+ ++VNFLVSLLKKNWQNVR LY+KSTMGK RL+ Sbjct: 173 MTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 216
>RL10A_BOVIN (Q5E9E6) 60S ribosomal protein L10a| Length = 216 Score = 63.9 bits (154), Expect = 1e-10 Identities = 28/44 (63%), Positives = 36/44 (81%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVXRLF 174 M + ++ N+ ++VNFLVSLLKKNWQNVR LY+KSTMGK RL+ Sbjct: 173 MTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 216
>RL10A_TRYBR (P53028) 60S ribosomal protein L10a| Length = 214 Score = 63.2 bits (152), Expect = 2e-10 Identities = 28/44 (63%), Positives = 36/44 (81%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVXRLF 174 M E Q+ QNV M++NFLVSLLKKNWQN++ Y+KSTMGK R++ Sbjct: 171 MTEDQVRQNVVMAINFLVSLLKKNWQNLKSAYIKSTMGKSQRIY 214
>R10AB_DROME (Q9VTP4) 60S ribosomal protein L10a-2| Length = 217 Score = 60.5 bits (145), Expect = 1e-09 Identities = 27/44 (61%), Positives = 36/44 (81%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVXRLF 174 M+ ++ QNV +S+NFLVSLLKKNWQNVR L++KS+MG RL+ Sbjct: 174 MKSDELAQNVNLSINFLVSLLKKNWQNVRSLHVKSSMGPPQRLY 217
>RL10A_CAEEL (Q9N4I4) 60S ribosomal protein L10a| Length = 216 Score = 59.7 bits (143), Expect = 2e-09 Identities = 25/44 (56%), Positives = 36/44 (81%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVXRLF 174 + ++++ N+ +S+NFLVSLLKKNWQNVR L +KSTMGK R++ Sbjct: 173 LTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 216
>RL1B_SCHPO (O74836) 60S ribosomal protein L1-B (L10a)| Length = 216 Score = 58.5 bits (140), Expect = 4e-09 Identities = 26/44 (59%), Positives = 34/44 (77%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVXRLF 174 M E+Q+ N+ ++VNFLVSLLKK WQN+ L +KSTMGK RL+ Sbjct: 173 MSEEQLIANIMLAVNFLVSLLKKGWQNIGSLVVKSTMGKPHRLY 216
>RL10A_SPOFR (Q963B6) 60S ribosomal protein L10a| Length = 217 Score = 57.8 bits (138), Expect = 7e-09 Identities = 26/44 (59%), Positives = 35/44 (79%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVXRLF 174 M ++ QNV +S+NFLVSLLKK+WQNVR L++KSTMG +L+ Sbjct: 174 MTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPPKLY 217
>RL10A_CANGA (Q6FRF5) 60S ribosomal protein L10a| Length = 217 Score = 57.0 bits (136), Expect = 1e-08 Identities = 27/44 (61%), Positives = 32/44 (72%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVXRLF 174 M+E + + MSVNFLVSLLKKNWQNV L +KSTMG RL+ Sbjct: 174 MDEDTLVNQILMSVNFLVSLLKKNWQNVGSLVIKSTMGPAFRLY 217
>RL10A_ASHGO (Q755D9) 60S ribosomal protein L10a| Length = 217 Score = 57.0 bits (136), Expect = 1e-08 Identities = 27/44 (61%), Positives = 32/44 (72%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVXRLF 174 M+E + + MSVNFLVSLLKKNWQNV L +KSTMG RL+ Sbjct: 174 MDEDTLVNQILMSVNFLVSLLKKNWQNVGSLVIKSTMGPAFRLY 217
>RL1A_SCHPO (O14363) 60S ribosomal protein L1-A (L10a)| Length = 216 Score = 56.6 bits (135), Expect = 2e-08 Identities = 25/44 (56%), Positives = 34/44 (77%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVXRLF 174 M E+Q+ N+ +++NFLVSLLKK WQN+ L +KSTMGK RL+ Sbjct: 173 MAEEQLAANLSLAINFLVSLLKKGWQNIGSLVIKSTMGKPYRLY 216
>RL1_YEAST (P53030) 60S ribosomal protein L1 (L10a)| Length = 217 Score = 54.3 bits (129), Expect = 8e-08 Identities = 26/44 (59%), Positives = 31/44 (70%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVXRLF 174 MEE + + MSVNF VSLLKKNWQNV L +KS+MG RL+ Sbjct: 174 MEEDVLVNQILMSVNFFVSLLKKNWQNVGSLVVKSSMGPAFRLY 217
>RL10A_CANAL (Q9UVJ4) 60S ribosomal protein L10a| Length = 217 Score = 54.3 bits (129), Expect = 8e-08 Identities = 25/44 (56%), Positives = 31/44 (70%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVXRLF 174 MEE + + M+ NFLVSLLKKNWQNV L +KSTMG R++ Sbjct: 174 MEEDVLVNQIMMAANFLVSLLKKNWQNVGSLVIKSTMGPSFRIY 217
>RL10A_NEUCR (Q7RZS0) 60S ribosomal protein L10a| Length = 217 Score = 49.3 bits (116), Expect = 2e-06 Identities = 21/44 (47%), Positives = 32/44 (72%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVXRLF 174 M ++Q+ N+ +++N+LVSLLKK WQNV L +K+TM RL+ Sbjct: 174 MTQEQLVGNIMLAINYLVSLLKKGWQNVGSLTIKATMSPPKRLY 217
>RL1_METKA (Q8TX51) 50S ribosomal protein L1P| Length = 214 Score = 35.4 bits (80), Expect = 0.037 Identities = 14/44 (31%), Positives = 27/44 (61%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVXRLF 174 ME +Q+ +N + + S L+K+W + +Y+K+TMG R++ Sbjct: 171 MEPEQLAENAMAVLREITSELEKSWAQIDSVYVKTTMGPAERVY 214
>RL1_PYRHO (O57782) 50S ribosomal protein L1P| Length = 219 Score = 34.3 bits (77), Expect = 0.082 Identities = 12/43 (27%), Positives = 28/43 (65%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVXRL 177 M ++Q+ +N++ +N ++ L++ +R +Y+K+TMG R+ Sbjct: 175 MSDEQLAENIEAVLNAIIGKLERGENQIRSVYVKTTMGPAVRV 217
>RL1_PYRFU (Q8TZJ9) 50S ribosomal protein L1P| Length = 216 Score = 32.3 bits (72), Expect = 0.31 Identities = 11/43 (25%), Positives = 28/43 (65%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVXRL 177 M +++I +N++ +N ++ L++ V+ +Y+K+TMG ++ Sbjct: 172 MSDEEIAENIEAVLNAIIGKLERGESQVKSVYVKTTMGPAVKI 214
>RL1_THEVO (Q97BN2) 50S ribosomal protein L1P| Length = 217 Score = 32.3 bits (72), Expect = 0.31 Identities = 12/43 (27%), Positives = 28/43 (65%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVXRL 177 M+ ++I +N+ +N + L++ N++ +Y+K+TMGK ++ Sbjct: 169 MDTQKISENIMAILNRITGKLERGHSNIKNVYVKTTMGKAVQV 211
>RL1_THEAC (Q9HL71) 50S ribosomal protein L1P| Length = 217 Score = 32.3 bits (72), Expect = 0.31 Identities = 12/43 (27%), Positives = 25/43 (58%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVXRL 177 M+ +I +N+ +N + L++ N+R +Y+K+TMG + Sbjct: 169 MDADKISENIMTVINRITGKLERGASNIRSIYVKTTMGNAVEI 211
>RL1_PYRAB (Q9UWR8) 50S ribosomal protein L1P| Length = 219 Score = 31.6 bits (70), Expect = 0.53 Identities = 10/43 (23%), Positives = 28/43 (65%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVXRL 177 M +++I +N++ +N ++ L++ ++ +Y+K+TMG ++ Sbjct: 175 MSDEEIAENIETVLNAIIGKLERGESQIKSVYVKTTMGPAVKV 217
>RL1_METBF (Q46EU8) 50S ribosomal protein L1P| Length = 213 Score = 31.2 bits (69), Expect = 0.69 Identities = 15/43 (34%), Positives = 26/43 (60%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVXRL 177 M + +NV++ V+ L +L K N+R +Y+ +TMGK R+ Sbjct: 170 MSPDDLAENVEIIVSRLERVLDKGRHNLRTVYVTTTMGKSERV 212
>RL1_PYRKO (Q5JH35) 50S ribosomal protein L1P| Length = 216 Score = 31.2 bits (69), Expect = 0.69 Identities = 10/43 (23%), Positives = 29/43 (67%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVXRL 177 M+++++ +N + +N +++ L++ V+ +Y+K+TMG ++ Sbjct: 172 MDDEKLAENAEAVLNAIINKLERGENQVKSVYIKTTMGPAVKV 214
>RL1_METAC (Q8TI81) 50S ribosomal protein L1P| Length = 213 Score = 29.6 bits (65), Expect = 2.0 Identities = 13/43 (30%), Positives = 26/43 (60%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVXRL 177 M + + +N++ ++ L +L K N+R +Y+ +TMGK R+ Sbjct: 170 MNPEDLAENIETIMSRLERVLDKGKHNLRTVYVTTTMGKSERV 212
>RL1_METTH (O27716) 50S ribosomal protein L1P| Length = 224 Score = 29.6 bits (65), Expect = 2.0 Identities = 11/43 (25%), Positives = 28/43 (65%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVXRL 177 M+++++ +N++ + + L+K ++ +Y+K+TMG V R+ Sbjct: 181 MDDEKLAENIEAVLQTIDRKLEKGRNQLKSMYVKTTMGPVVRV 223
>RL1_PICTO (Q6L1X9) 50S ribosomal protein L1P| Length = 213 Score = 28.9 bits (63), Expect = 3.4 Identities = 13/43 (30%), Positives = 23/43 (53%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVXRL 177 M + ++ N +VS L K N+ +Y+K+TMGK ++ Sbjct: 164 MSDDDLYNNFVTVYKRIVSRLDKGPGNIDSIYIKTTMGKAIKV 206
>RL1_METMA (Q8PY52) 50S ribosomal protein L1P| Length = 213 Score = 28.9 bits (63), Expect = 3.4 Identities = 13/43 (30%), Positives = 25/43 (58%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVXRL 177 M + +N++ ++ L +L K N+R +Y+ +TMGK R+ Sbjct: 170 MNPDDLSENIETIMSRLERVLDKGKHNLRSVYVTTTMGKSERV 212
>RL1_NATPD (Q3INI6) 50S ribosomal protein L1P| Length = 212 Score = 28.1 bits (61), Expect = 5.9 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMG 192 M+ I NV + + L + L+K QN+ +Y+K+TMG Sbjct: 168 MDADAIADNVDVILRRLFTDLEKGPQNIDTVYVKTTMG 205
>RL1_HALVO (P41199) 50S ribosomal protein L1P| Length = 209 Score = 27.7 bits (60), Expect = 7.7 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMG 192 M +I +N+ + V L + L+K N+ +Y+K+TMG Sbjct: 165 MTPDEIAENIDVIVRRLEATLEKGPLNIDSVYVKTTMG 202
>RL1_METJA (P54050) 50S ribosomal protein L1P| Length = 219 Score = 27.7 bits (60), Expect = 7.7 Identities = 11/43 (25%), Positives = 24/43 (55%) Frame = -3 Query: 305 MEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKVXRL 177 M ++QI N++ +N + +K +++ Y+K TMG ++ Sbjct: 169 MTDEQIVDNIEAVLNVVAKKYEKGLYHIKDAYVKLTMGPAVKV 211 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,206,183 Number of Sequences: 219361 Number of extensions: 537200 Number of successful extensions: 1431 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 1406 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1430 length of database: 80,573,946 effective HSP length: 77 effective length of database: 63,683,149 effective search space used: 1528395576 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
