ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags16j20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1RL27_ARATH (P51419) 60S ribosomal protein L27 119 3e-27
2RL27_PEA (Q05462) 60S ribosomal protein L27 115 8e-26
3RL27_SOLTU (P41101) 60S ribosomal protein L27 110 2e-24
4RL27_PYRST (Q02984) 60S ribosomal protein L27 95 1e-19
5RL27_YEAST (P38706) 60S ribosomal protein L27 82 8e-16
6RL27B_SCHPO (O74538) 60S ribosomal protein L27-B 80 3e-15
7RL27_HIPCM (P61359) 60S ribosomal protein L27 79 9e-15
8RL27_BRARE (Q7ZV82) 60S ribosomal protein L27 78 1e-14
9RL27_CAEEL (P91914) 60S ribosomal protein L27 77 2e-14
10RL27_RAT (P61354) 60S ribosomal protein L27 77 2e-14
11RL27_MOUSE (P61358) 60S ribosomal protein L27 77 2e-14
12RL27_HUMAN (P61353) 60S ribosomal protein L27 77 2e-14
13RL27_CHICK (P61355) 60S ribosomal protein L27 77 2e-14
14RL27_CERNI (P61357) 60S ribosomal protein L27 77 2e-14
15RL27_BOVIN (P61356) 60S ribosomal protein L27 77 2e-14
16RL17_ICTPU (Q90YU1) 60S ribosomal protein L27 77 3e-14
17RL27_CANFA (Q9XSU7) 60S ribosomal protein L27 76 4e-14
18RL27A_SCHPO (O14388) 60S ribosomal protein L27-A 74 2e-13
19RL27_CANAL (Q9P843) 60S ribosomal protein L27 72 8e-13 
>RL27_ARATH (P51419) 60S ribosomal protein L27|
          Length = 135

 Score =  119 bits (299), Expect = 3e-27
 Identities = 64/94 (68%), Positives = 67/94 (71%)
 Frame = -3

Query: 495 AGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHXMPTRYTLDVDLKEVASGAPXXXX 316
           AGL KYP KVIRKDSAKKTAKKSRVK F+KLVN+ H MPTRYTLDVDLKEVA+       
Sbjct: 44  AGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVAT--LDALQ 101

Query: 315 XXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 214
                          LEERFKTGKNRWFFTKLRF
Sbjct: 102 SKDKKVAALKEAKAKLEERFKTGKNRWFFTKLRF 135
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>RL27_PEA (Q05462) 60S ribosomal protein L27|
          Length = 135

 Score =  115 bits (287), Expect = 8e-26
 Identities = 59/94 (62%), Positives = 65/94 (69%)
 Frame = -3

Query: 495 AGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHXMPTRYTLDVDLKEVASGAPXXXX 316
           AG+ K+P KVI+KDSAKKTAKKSRVK F+KLVN+ H MPTRYTLDVDLK+     P    
Sbjct: 44  AGIKKFPSKVIKKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAV--VPDVLQ 101

Query: 315 XXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 214
                          LEERFKTGKNRWFFTKLRF
Sbjct: 102 SKDKKVTALKETKKSLEERFKTGKNRWFFTKLRF 135
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>RL27_SOLTU (P41101) 60S ribosomal protein L27|
          Length = 138

 Score =  110 bits (275), Expect = 2e-24
 Identities = 57/95 (60%), Positives = 63/95 (66%), Gaps = 1/95 (1%)
 Frame = -3

Query: 495 AGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHXMPTRYTLDVDLKEVASG-APXXX 319
           AG+++YPKKVIRKDSAKK  KKSRVK F+KLVN+ H MPTRYTLD DLK+V         
Sbjct: 44  AGISRYPKKVIRKDSAKKAGKKSRVKAFIKLVNYNHIMPTRYTLDEDLKDVVKDVVNADV 103

Query: 318 XXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 214
                           L ERFKTGKNRWFFTKLRF
Sbjct: 104 LQARDKKVTARRTKARLAERFKTGKNRWFFTKLRF 138
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>RL27_PYRST (Q02984) 60S ribosomal protein L27|
          Length = 134

 Score = 94.7 bits (234), Expect = 1e-19
 Identities = 51/93 (54%), Positives = 59/93 (63%)
 Frame = -3

Query: 492 GLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHXMPTRYTLDVDLKEVASGAPXXXXX 313
           GL K P+KV ++ S KK AKKS +K F+K VN+ H MPTRYTLDVD K VA+ A      
Sbjct: 45  GLQKEPRKVTKRQSQKKQAKKSTLKTFIKTVNYNHLMPTRYTLDVDFKGVAAEA---QEN 101

Query: 312 XXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 214
                         LEE+FKTGKNRWFFTKLRF
Sbjct: 102 PTKKVEARKECKKLLEEKFKTGKNRWFFTKLRF 134
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>RL27_YEAST (P38706) 60S ribosomal protein L27|
          Length = 136

 Score = 82.0 bits (201), Expect = 8e-16
 Identities = 42/95 (44%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
 Frame = -3

Query: 495 AGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHXMPTRYTLDVD-LKEVASGAPXXX 319
           AG+ +YP KV +K  AKK AK++++K F+K+VN+ H +PTRYTLDV+  K V S      
Sbjct: 44  AGIERYPLKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVS--TETF 101

Query: 318 XXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 214
                            EER + GKN+WFF+KLRF
Sbjct: 102 EQPSQREEAKKVVKKAFEERHQAGKNQWFFSKLRF 136
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>RL27B_SCHPO (O74538) 60S ribosomal protein L27-B|
          Length = 136

 Score = 80.1 bits (196), Expect = 3e-15
 Identities = 40/95 (42%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
 Frame = -3

Query: 495 AGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHXMPTRYTLDVD-LKEVASGAPXXX 319
           AG+ +YP KV +   AK+ AK+SRVK F+K++N+ H MPTRY L++D LK + +  P   
Sbjct: 44  AGVERYPLKVTKSMGAKRIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVT--PTTF 101

Query: 318 XXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 214
                            EE+++TGK+ WFFT LRF
Sbjct: 102 SEPSQRSAAKKTVKNTFEEKYQTGKSAWFFTPLRF 136
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>RL27_HIPCM (P61359) 60S ribosomal protein L27|
          Length = 135

 Score = 78.6 bits (192), Expect = 9e-15
 Identities = 38/94 (40%), Positives = 53/94 (56%)
 Frame = -3

Query: 495 AGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHXMPTRYTLDVDLKEVASGAPXXXX 316
           AG+ +YP+KV      KK AK+S++K F+K+ N+ H MPTRY++D+ L +          
Sbjct: 43  AGIDRYPRKVTAPMGKKKIAKRSKIKAFVKVYNYNHLMPTRYSVDIPLDKTVVN-KDVFR 101

Query: 315 XXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 214
                           EER+KTGKN+WFF KLRF
Sbjct: 102 DPALKSKARREAKVKFEERYKTGKNKWFFQKLRF 135
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>RL27_BRARE (Q7ZV82) 60S ribosomal protein L27|
          Length = 135

 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 38/94 (40%), Positives = 53/94 (56%)
 Frame = -3

Query: 495 AGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHXMPTRYTLDVDLKEVASGAPXXXX 316
           AG+ +YP+KV      KK AK+S++K F+K+ N+ H MPTRY++D+ L +          
Sbjct: 43  AGIDRYPRKVTATMGKKKIAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTVVN-KDVFR 101

Query: 315 XXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 214
                           EER+KTGKN+WFF KLRF
Sbjct: 102 DPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 135
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>RL27_CAEEL (P91914) 60S ribosomal protein L27|
          Length = 136

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 41/99 (41%), Positives = 59/99 (59%), Gaps = 5/99 (5%)
 Frame = -3

Query: 495 AGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHXMPTRYTLDV-----DLKEVASGA 331
           AG+ +YP KV +    KK  K++++K FLK+V++TH +PTRY++DV     ++ + A  A
Sbjct: 44  AGIDRYPLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKA 103

Query: 330 PXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 214
           P                    EER+KTGKN+WFFTKLRF
Sbjct: 104 P------SKKRKALVEVKSKFEERYKTGKNKWFFTKLRF 136
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>RL27_RAT (P61354) 60S ribosomal protein L27|
          Length = 135

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 38/94 (40%), Positives = 53/94 (56%)
 Frame = -3

Query: 495 AGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHXMPTRYTLDVDLKEVASGAPXXXX 316
           AG+ +YP+KV      KK AK+S++K F+K+ N+ H MPTRY++D+ L +          
Sbjct: 43  AGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVN-KDVFR 101

Query: 315 XXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 214
                           EER+KTGKN+WFF KLRF
Sbjct: 102 DPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 135
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>RL27_MOUSE (P61358) 60S ribosomal protein L27|
          Length = 135

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 38/94 (40%), Positives = 53/94 (56%)
 Frame = -3

Query: 495 AGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHXMPTRYTLDVDLKEVASGAPXXXX 316
           AG+ +YP+KV      KK AK+S++K F+K+ N+ H MPTRY++D+ L +          
Sbjct: 43  AGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVN-KDVFR 101

Query: 315 XXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 214
                           EER+KTGKN+WFF KLRF
Sbjct: 102 DPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 135
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>RL27_HUMAN (P61353) 60S ribosomal protein L27|
          Length = 135

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 38/94 (40%), Positives = 53/94 (56%)
 Frame = -3

Query: 495 AGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHXMPTRYTLDVDLKEVASGAPXXXX 316
           AG+ +YP+KV      KK AK+S++K F+K+ N+ H MPTRY++D+ L +          
Sbjct: 43  AGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVN-KDVFR 101

Query: 315 XXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 214
                           EER+KTGKN+WFF KLRF
Sbjct: 102 DPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 135
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>RL27_CHICK (P61355) 60S ribosomal protein L27|
          Length = 135

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 38/94 (40%), Positives = 53/94 (56%)
 Frame = -3

Query: 495 AGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHXMPTRYTLDVDLKEVASGAPXXXX 316
           AG+ +YP+KV      KK AK+S++K F+K+ N+ H MPTRY++D+ L +          
Sbjct: 43  AGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVN-KDVFR 101

Query: 315 XXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 214
                           EER+KTGKN+WFF KLRF
Sbjct: 102 DPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 135
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>RL27_CERNI (P61357) 60S ribosomal protein L27|
          Length = 135

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 38/94 (40%), Positives = 53/94 (56%)
 Frame = -3

Query: 495 AGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHXMPTRYTLDVDLKEVASGAPXXXX 316
           AG+ +YP+KV      KK AK+S++K F+K+ N+ H MPTRY++D+ L +          
Sbjct: 43  AGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVN-KDVFR 101

Query: 315 XXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 214
                           EER+KTGKN+WFF KLRF
Sbjct: 102 DPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 135
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>RL27_BOVIN (P61356) 60S ribosomal protein L27|
          Length = 135

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 38/94 (40%), Positives = 53/94 (56%)
 Frame = -3

Query: 495 AGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHXMPTRYTLDVDLKEVASGAPXXXX 316
           AG+ +YP+KV      KK AK+S++K F+K+ N+ H MPTRY++D+ L +          
Sbjct: 43  AGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVN-KDVFR 101

Query: 315 XXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 214
                           EER+KTGKN+WFF KLRF
Sbjct: 102 DPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 135
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>RL17_ICTPU (Q90YU1) 60S ribosomal protein L27|
          Length = 135

 Score = 77.0 bits (188), Expect = 3e-14
 Identities = 37/94 (39%), Positives = 53/94 (56%)
 Frame = -3

Query: 495 AGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHXMPTRYTLDVDLKEVASGAPXXXX 316
           +G+ +YP+KV      KK AK+S++K F+K+ N+ H MPTRY++D+ L +          
Sbjct: 43  SGIDRYPRKVTATMGKKKVAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTIVN-KDVFR 101

Query: 315 XXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 214
                           EER+KTGKN+WFF KLRF
Sbjct: 102 DPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 135
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>RL27_CANFA (Q9XSU7) 60S ribosomal protein L27|
          Length = 135

 Score = 76.3 bits (186), Expect = 4e-14
 Identities = 37/94 (39%), Positives = 53/94 (56%)
 Frame = -3

Query: 495 AGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHXMPTRYTLDVDLKEVASGAPXXXX 316
           AG+ +YP+KV      KK AK+S++K F+K+ N+ H MPTRY++D+ L +          
Sbjct: 43  AGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVN-KDVFR 101

Query: 315 XXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 214
                           EE++KTGKN+WFF KLRF
Sbjct: 102 DPALKRKARREAKVKFEEKYKTGKNKWFFQKLRF 135
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>RL27A_SCHPO (O14388) 60S ribosomal protein L27-A|
          Length = 136

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 38/95 (40%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
 Frame = -3

Query: 495 AGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHXMPTRYTLDVD-LKEVASGAPXXX 319
           AG+ +YP KV +   AK+ A++SRVK F+K+VN+ H MPTRY L++D LK + +      
Sbjct: 44  AGVERYPLKVTKSMGAKRIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITA--DTF 101

Query: 318 XXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 214
                            EE++++GK+ WFFT LRF
Sbjct: 102 KEPTQRSAARKTVKKTFEEKYQSGKSAWFFTPLRF 136
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>RL27_CANAL (Q9P843) 60S ribosomal protein L27|
          Length = 136

 Score = 72.0 bits (175), Expect = 8e-13
 Identities = 38/94 (40%), Positives = 52/94 (55%)
 Frame = -3

Query: 495 AGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHXMPTRYTLDVDLKEVASGAPXXXX 316
           AG+ + P KV +K  AKK  K+++VK F+KLVN+ H MPTRY+LDV+  + A        
Sbjct: 44  AGIERAPLKVTKKMDAKKVTKRTKVKPFVKLVNYNHLMPTRYSLDVESFKSAV-TSEALE 102

Query: 315 XXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 214
                           EE+ + GKN+WFF KL F
Sbjct: 103 EPSQREEAKKVVKKAFEEKHQAGKNKWFFQKLHF 136


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,366,870
Number of Sequences: 219361
Number of extensions: 770276
Number of successful extensions: 1755
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1734
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3523384522
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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