ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags16j18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.010
2dbj|AP004678.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.010
3gb|AC023743.4| Drosophila melanogaster X BAC RP98-40O10 (Roswell... 42 0.64
4gb|AE003444.3| Drosophila melanogaster chromosome X, section 28 ... 42 0.64
5gb|U97403.2| Caenorhabditis elegans cosmid T10E9, complete sequence 40 2.5
6emb|AL109939.13|HSJ351K20 Human DNA sequence from clone RP3-351K... 40 2.5
7ref|NM_059483.2| Caenorhabditis elegans T10E9.2 (T10E9.2) mRNA, ... 40 2.5
8dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.5
9gb|AC145087.14| Mus musculus chromosome 1, clone RP23-255P18, co... 40 2.5
10dbj|AP004761.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.5
11dbj|AP004708.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.5

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                                  
Query: 152      cttaatgtcgtcttgtnttttnaccccgtattgtaacaccatgtaaaaat 201
                ||||||| |||||||| |||   |||| |||||| |||||||||||||||
Sbjct: 29792249 cttaatgccgtcttgtatttgagccccttattgtgacaccatgtaaaaat 29792200



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>dbj|AP004678.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1136_F03
          Length = 110783

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                               
Query: 152   cttaatgtcgtcttgtnttttnaccccgtattgtaacaccatgtaaaaat 201
             ||||||| |||||||| |||   |||| |||||| |||||||||||||||
Sbjct: 90379 cttaatgccgtcttgtatttgagccccttattgtgacaccatgtaaaaat 90330



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>gb|AC023743.4| Drosophila melanogaster X BAC RP98-40O10 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 185405

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 13    aacatcacaaaaaggaagaag 33
             |||||||||||||||||||||
Sbjct: 91236 aacatcacaaaaaggaagaag 91256



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>gb|AE003444.3| Drosophila melanogaster chromosome X, section 28 of 74 of the complete
              sequence
          Length = 299633

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 13     aacatcacaaaaaggaagaag 33
              |||||||||||||||||||||
Sbjct: 208281 aacatcacaaaaaggaagaag 208301



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>gb|U97403.2| Caenorhabditis elegans cosmid T10E9, complete sequence
          Length = 27586

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    caaaaaggaagaagattgat 39
             ||||||||||||||||||||
Sbjct: 23721 caaaaaggaagaagattgat 23740



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>emb|AL109939.13|HSJ351K20 Human DNA sequence from clone RP3-351K20 on chromosome 6q22.1-22.33
             Contains the DKFZP434O1427 gene for dactilydin (FLJ14870,
             FLJ14530), the gene for a novel enoyl-CoA
             hydratase/isomerase family protein similar to
             uncharacterised hypothalamus protein HCDASE, a tyrosine
             3-monooxygenase/tryptophan 5-monooxygenase activation
             protein, zeta polypeptide (Tyrosine
             3-monooxygenase/tryptophan 5-monooxygenase activation)
             (YWHAZ)(14-3-3 zeta) pseudogene, a 60S ribosomal protein
             L5 (RPL5) pseudogene and a CpG island, complete sequence
          Length = 115583

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    catcacaaaaaggaagaaga 34
             ||||||||||||||||||||
Sbjct: 42103 catcacaaaaaggaagaaga 42122



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>ref|NM_059483.2| Caenorhabditis elegans T10E9.2 (T10E9.2) mRNA, complete cds
          Length = 2307

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 20   caaaaaggaagaagattgat 39
            ||||||||||||||||||||
Sbjct: 2173 caaaaaggaagaagattgat 2192



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 13       aacatcacaaaaaggaagaa 32
                ||||||||||||||||||||
Sbjct: 25646242 aacatcacaaaaaggaagaa 25646261



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>gb|AC145087.14| Mus musculus chromosome 1, clone RP23-255P18, complete sequence
          Length = 187470

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 43    taaccacaggacagaagaagcagg 66
             |||||||||||||||| |||||||
Sbjct: 70390 taaccacaggacagaaaaagcagg 70413



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>dbj|AP004761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0686C03
          Length = 164529

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 13     aacatcacaaaaaggaagaa 32
              ||||||||||||||||||||
Sbjct: 132933 aacatcacaaaaaggaagaa 132952



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>dbj|AP004708.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0700D12
          Length = 145177

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    aacatcacaaaaaggaagaa 32
             ||||||||||||||||||||
Sbjct: 23990 aacatcacaaaaaggaagaa 24009


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,029,391
Number of Sequences: 3902068
Number of extensions: 2029391
Number of successful extensions: 144896
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 144797
Number of HSP's gapped (non-prelim): 99
length of query: 201
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 179
effective length of database: 17,147,199,772
effective search space: 3069348759188
effective search space used: 3069348759188
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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