| Clone Name | rbags16j18 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 48.1 bits (24), Expect = 0.010 Identities = 43/50 (86%) Strand = Plus / Minus Query: 152 cttaatgtcgtcttgtnttttnaccccgtattgtaacaccatgtaaaaat 201 ||||||| |||||||| ||| |||| |||||| ||||||||||||||| Sbjct: 29792249 cttaatgccgtcttgtatttgagccccttattgtgacaccatgtaaaaat 29792200
>dbj|AP004678.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1136_F03 Length = 110783 Score = 48.1 bits (24), Expect = 0.010 Identities = 43/50 (86%) Strand = Plus / Minus Query: 152 cttaatgtcgtcttgtnttttnaccccgtattgtaacaccatgtaaaaat 201 ||||||| |||||||| ||| |||| |||||| ||||||||||||||| Sbjct: 90379 cttaatgccgtcttgtatttgagccccttattgtgacaccatgtaaaaat 90330
>gb|AC023743.4| Drosophila melanogaster X BAC RP98-40O10 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 185405 Score = 42.1 bits (21), Expect = 0.64 Identities = 21/21 (100%) Strand = Plus / Plus Query: 13 aacatcacaaaaaggaagaag 33 ||||||||||||||||||||| Sbjct: 91236 aacatcacaaaaaggaagaag 91256
>gb|AE003444.3| Drosophila melanogaster chromosome X, section 28 of 74 of the complete sequence Length = 299633 Score = 42.1 bits (21), Expect = 0.64 Identities = 21/21 (100%) Strand = Plus / Plus Query: 13 aacatcacaaaaaggaagaag 33 ||||||||||||||||||||| Sbjct: 208281 aacatcacaaaaaggaagaag 208301
>gb|U97403.2| Caenorhabditis elegans cosmid T10E9, complete sequence Length = 27586 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 caaaaaggaagaagattgat 39 |||||||||||||||||||| Sbjct: 23721 caaaaaggaagaagattgat 23740
>emb|AL109939.13|HSJ351K20 Human DNA sequence from clone RP3-351K20 on chromosome 6q22.1-22.33 Contains the DKFZP434O1427 gene for dactilydin (FLJ14870, FLJ14530), the gene for a novel enoyl-CoA hydratase/isomerase family protein similar to uncharacterised hypothalamus protein HCDASE, a tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide (Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation) (YWHAZ)(14-3-3 zeta) pseudogene, a 60S ribosomal protein L5 (RPL5) pseudogene and a CpG island, complete sequence Length = 115583 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 catcacaaaaaggaagaaga 34 |||||||||||||||||||| Sbjct: 42103 catcacaaaaaggaagaaga 42122
>ref|NM_059483.2| Caenorhabditis elegans T10E9.2 (T10E9.2) mRNA, complete cds Length = 2307 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 caaaaaggaagaagattgat 39 |||||||||||||||||||| Sbjct: 2173 caaaaaggaagaagattgat 2192
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 aacatcacaaaaaggaagaa 32 |||||||||||||||||||| Sbjct: 25646242 aacatcacaaaaaggaagaa 25646261
>gb|AC145087.14| Mus musculus chromosome 1, clone RP23-255P18, complete sequence Length = 187470 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 taaccacaggacagaagaagcagg 66 |||||||||||||||| ||||||| Sbjct: 70390 taaccacaggacagaaaaagcagg 70413
>dbj|AP004761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0686C03 Length = 164529 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 aacatcacaaaaaggaagaa 32 |||||||||||||||||||| Sbjct: 132933 aacatcacaaaaaggaagaa 132952
>dbj|AP004708.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0700D12 Length = 145177 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 aacatcacaaaaaggaagaa 32 |||||||||||||||||||| Sbjct: 23990 aacatcacaaaaaggaagaa 24009 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,029,391 Number of Sequences: 3902068 Number of extensions: 2029391 Number of successful extensions: 144896 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 144797 Number of HSP's gapped (non-prelim): 99 length of query: 201 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 179 effective length of database: 17,147,199,772 effective search space: 3069348759188 effective search space used: 3069348759188 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)