ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags16j09 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X82830.1|HVCIIIO H.vulgare mRNA for coproporphyrinogen oxidase Length = 1456 Score = 1217 bits (614), Expect = 0.0 Identities = 614/614 (100%) Strand = Plus / Minus Query: 1 ctcggaagggaagaggcacagcaggtacaaagcttgattgaactaaaccgtcgttacacc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1401 ctcggaagggaagaggcacagcaggtacaaagcttgattgaactaaaccgtcgttacacc 1342 Query: 61 tccatgtgcttatcaaaaactctacagagcaaaaaaggaactacacatggctacacagag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1341 tccatgtgcttatcaaaaactctacagagcaaaaaaggaactacacatggctacacagag 1282 Query: 121 tgaggaacactaacaaaacgactgaaaaaacaaacaacctcagctaatcacagccactcc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1281 tgaggaacactaacaaaacgactgaaaaaacaaacaacctcagctaatcacagccactcc 1222 Query: 181 tttgggtttatgcacgcgtcgagaagcttccactcttcgctcccttcttcgggtttatgg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1221 tttgggtttatgcacgcgtcgagaagcttccactcttcgctcccttcttcgggtttatgg 1162 Query: 241 tcatactcccatcgtgcagtgagtggtagggagacgagtatactttcgatccttcccccg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1161 tcatactcccatcgtgcagtgagtggtagggagacgagtatactttcgatccttcccccg 1102 Query: 301 gtcttgagtccaaatgtggtgccacgatcgtagacaaggttgaactccacatagcgacct 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1101 gtcttgagtccaaatgtggtgccacgatcgtagacaaggttgaactccacatagcgacct 1042 Query: 361 ctccgcacttgctgccatgccttctgctcctcattgaatggagtgtctttgcggcgttct 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1041 ctccgcacttgctgccatgccttctgctcctcattgaatggagtgtctttgcggcgttct 982 Query: 421 atgatgggtatgtatgcaggaattacagaaccggcacattctgtggcaaagttcagaagc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 981 atgatgggtatgtatgcaggaattacagaaccggcacattctgtggcaaagttcagaagc 922 Query: 481 atgtcttggtcataatcattaagatcatcaaaaaatattccgccaagcccacgtctctca 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 921 atgtcttggtcataatcattaagatcatcaaaaaatattccgccaagcccacgtctctca 862 Query: 541 ttacgatgcttaatatagaaataatcatcgcaccattttttgaatcttgggtaaaaactt 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 861 ttacgatgcttaatatagaaataatcatcgcaccattttttgaatcttgggtaaaaactt 802 Query: 601 ggatcgaacttatc 614 |||||||||||||| Sbjct: 801 ggatcgaacttatc 788
>ref|XM_473852.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1200 Score = 426 bits (215), Expect = e-116 Identities = 386/443 (87%) Strand = Plus / Minus Query: 172 agccactcctttgggtttatgcacgcgtcgagaagcttccactcttcgctcccttcttcg 231 ||||| ||||||||||||||||||||||| ||||| |||| ||||| | || ||||| Sbjct: 1190 agccattcctttgggtttatgcacgcgtcaagaagtttccgttcttcagttccctcttca 1131 Query: 232 ggtttatggtcatactcccatcgtgcagtgagtggtagggagacgagtatactttcgatc 291 ||| |||| ||||||| |||||||||||| ||||| || || || || ||||| || ||| Sbjct: 1130 ggtgtatgatcatactgccatcgtgcagtcagtggaagagaaaccagaatactctcaatc 1071 Query: 292 cttcccccggtcttgagtccaaatgtggtgccacgatcgtagacaaggttgaactccaca 351 || ||||| |||||||| ||||||||||| || ||||| || |||||||||||||||||| Sbjct: 1070 ctccccccagtcttgaggccaaatgtggtaccgcgatcatatacaaggttgaactccaca 1011 Query: 352 tagcgacctctccgcacttgctgccatgccttctgctcctcattgaatggagtgtctttg 411 ||||||||||||| || ||| ||||||||||| || |||||| | ||||||||||| || Sbjct: 1010 tagcgacctctcctcagttgttgccatgccttgtgttcctcagtaaatggagtgtccttc 951 Query: 412 cggcgttctatgatgggtatgtatgcaggaattacagaaccggcacattctgtggcaaag 471 |||||||| ||||| |||||||||||||||| |||||| | ||||||||||| |||||| Sbjct: 950 cggcgttcaatgattggtatgtatgcaggaacaacagaatccgcacattctgtagcaaag 891 Query: 472 ttcagaagcatgtcttggtcataatcattaagatcatcaaaaaatattccgccaagccca 531 || |||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||| Sbjct: 890 ttgagaagcatttcttgatcatagtcattaagatcatcaaaaaatattccaccaagcccc 831 Query: 532 cgtctctcattacgatgcttaatatagaaataatcatcgcaccattttttgaatcttggg 591 || | ||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct: 830 cgacgctcattacggtgcttaatatagaaataatcatcacaccattttttgaatctcggg 771 Query: 592 taaaaacttggatcgaacttatc 614 ||||||||||| || |||||||| Sbjct: 770 taaaaacttgggtcaaacttatc 748
>dbj|AK070391.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050L08, full insert sequence Length = 1164 Score = 426 bits (215), Expect = e-116 Identities = 386/443 (87%) Strand = Plus / Minus Query: 172 agccactcctttgggtttatgcacgcgtcgagaagcttccactcttcgctcccttcttcg 231 ||||| ||||||||||||||||||||||| ||||| |||| ||||| | || ||||| Sbjct: 926 agccattcctttgggtttatgcacgcgtcaagaagtttccgttcttcagttccctcttca 867 Query: 232 ggtttatggtcatactcccatcgtgcagtgagtggtagggagacgagtatactttcgatc 291 ||| |||| ||||||| |||||||||||| ||||| || || || || ||||| || ||| Sbjct: 866 ggtgtatgatcatactgccatcgtgcagtcagtggaagagaaaccagaatactctcaatc 807 Query: 292 cttcccccggtcttgagtccaaatgtggtgccacgatcgtagacaaggttgaactccaca 351 || ||||| |||||||| ||||||||||| || ||||| || |||||||||||||||||| Sbjct: 806 ctccccccagtcttgaggccaaatgtggtaccgcgatcatatacaaggttgaactccaca 747 Query: 352 tagcgacctctccgcacttgctgccatgccttctgctcctcattgaatggagtgtctttg 411 ||||||||||||| || ||| ||||||||||| || |||||| | ||||||||||| || Sbjct: 746 tagcgacctctcctcagttgttgccatgccttgtgttcctcagtaaatggagtgtccttc 687 Query: 412 cggcgttctatgatgggtatgtatgcaggaattacagaaccggcacattctgtggcaaag 471 |||||||| ||||| |||||||||||||||| |||||| | ||||||||||| |||||| Sbjct: 686 cggcgttcaatgattggtatgtatgcaggaacaacagaatccgcacattctgtagcaaag 627 Query: 472 ttcagaagcatgtcttggtcataatcattaagatcatcaaaaaatattccgccaagccca 531 || |||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||| Sbjct: 626 ttgagaagcatttcttgatcatagtcattaagatcatcaaaaaatattccaccaagcccc 567 Query: 532 cgtctctcattacgatgcttaatatagaaataatcatcgcaccattttttgaatcttggg 591 || | ||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct: 566 cgacgctcattacggtgcttaatatagaaataatcatcacaccattttttgaatctcggg 507 Query: 592 taaaaacttggatcgaacttatc 614 ||||||||||| || |||||||| Sbjct: 506 taaaaacttgggtcaaacttatc 484
>gb|AY224543.1| Oryza sativa (japonica cultivar-group) isolate 23485 coproporphyrinogen III oxidase mRNA, partial cds Length = 975 Score = 418 bits (211), Expect = e-114 Identities = 385/443 (86%) Strand = Plus / Minus Query: 172 agccactcctttgggtttatgcacgcgtcgagaagcttccactcttcgctcccttcttcg 231 ||||| ||||||||||||||||||||||| ||||| |||| ||||| | || ||||| Sbjct: 965 agccattcctttgggtttatgcacgcgtcaagaagtttccgttcttcagttccctcttca 906 Query: 232 ggtttatggtcatactcccatcgtgcagtgagtggtagggagacgagtatactttcgatc 291 ||| |||| | ||||| |||||||||||| ||||| || || || || ||||| || ||| Sbjct: 905 ggtgtatgataatactgccatcgtgcagtcagtggaagagaaaccagaatactctcaatc 846 Query: 292 cttcccccggtcttgagtccaaatgtggtgccacgatcgtagacaaggttgaactccaca 351 || ||||| |||||||| ||||||||||| || ||||| || |||||||||||||||||| Sbjct: 845 ctccccccagtcttgaggccaaatgtggtaccgcgatcatatacaaggttgaactccaca 786 Query: 352 tagcgacctctccgcacttgctgccatgccttctgctcctcattgaatggagtgtctttg 411 ||||||||||||| || ||| ||||||||||| || |||||| | ||||||||||| || Sbjct: 785 tagcgacctctcctcagttgttgccatgccttgtgttcctcagtaaatggagtgtccttc 726 Query: 412 cggcgttctatgatgggtatgtatgcaggaattacagaaccggcacattctgtggcaaag 471 |||||||| ||||| |||||||||||||||| |||||| | ||||||||||| |||||| Sbjct: 725 cggcgttcaatgattggtatgtatgcaggaacaacagaatccgcacattctgtagcaaag 666 Query: 472 ttcagaagcatgtcttggtcataatcattaagatcatcaaaaaatattccgccaagccca 531 || |||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||| Sbjct: 665 ttgagaagcatttcttgatcatagtcattaagatcatcaaaaaatattccaccaagcccc 606 Query: 532 cgtctctcattacgatgcttaatatagaaataatcatcgcaccattttttgaatcttggg 591 || | ||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct: 605 cgacgctcattacggtgcttaatatagaaataatcatcacaccattttttgaatctcggg 546 Query: 592 taaaaacttggatcgaacttatc 614 ||||||||||| || |||||||| Sbjct: 545 taaaaacttgggtcaaacttatc 523
>gb|DQ250641.1| Zea mays coproporphyrinogen III oxidase (cpx2) mRNA, complete cds Length = 1444 Score = 404 bits (204), Expect = e-109 Identities = 390/452 (86%) Strand = Plus / Minus Query: 163 gctaatcacagccactcctttgggtttatgcacgcgtcgagaagcttccactcttcgctc 222 |||||||| | ||| ||||| || |||||||||||||| ||||| ||||| ||||| || Sbjct: 1271 gctaatcagatccaatccttcggatttatgcacgcgtccagaagtttccattcttcagtc 1212 Query: 223 ccttcttcgggtttatggtcatactcccatcgtgcagtgagtggtagggagacgagtata 282 |||||||| |||||||| ||||||| ||| ||||| |||||||| ||||| |||||||| Sbjct: 1211 ccttcttctggtttatgatcatactgccaccgtgctgtgagtggaagggacacgagtatg 1152 Query: 283 ctttcgatccttcccccggtcttgagtccaaatgtggtgccacgatcgtagacaaggttg 342 || || || ||||| || ||||| || || ||||| || || || ||||||||||||||| Sbjct: 1151 ctctcaattcttcctccagtctttaggccgaatgttgtaccgcggtcgtagacaaggttg 1092 Query: 343 aactccacatagcgacctctccgcacttgctgccatgccttctgctcctcattgaatgga 402 ||||||||||| |||||||||| || ||||||||| |||| ||||||||||||||||| Sbjct: 1091 aactccacataacgacctctcctcaactgctgccattccttgtgctcctcattgaatggg 1032 Query: 403 gtgtctttgcggcgttctatgatgggtatgtatgcaggaattacagaaccggcacattct 462 ||||| || || ||||||||||| |||||||| ||||||| |||||| | ||||||||| Sbjct: 1031 gtgtccttccgccgttctatgatcggtatgtaggcaggaagtacagagtccgcacattct 972 Query: 463 gtggcaaagttcagaagcatgtcttggtcataatcattaagatcatcaaaaaatattccg 522 || || ||||| |||||||| ||||| || ||||||||||| ||||||||||||||||| Sbjct: 971 gtagcgaagttgagaagcatttcttgatcgtaatcattaaggtcatcaaaaaatattcca 912 Query: 523 ccaagcccacgtctctcattacgatgcttaatatagaaataatcatcgcaccattttttg 582 ||||||||||| | ||| ||||| ||||||||||||||||||||||| |||||||||||| Sbjct: 911 ccaagcccacgccgctcgttacggtgcttaatatagaaataatcatcacaccattttttg 852 Query: 583 aatcttgggtaaaaacttggatcgaacttatc 614 |||||||||| |||||||||||| || ||||| Sbjct: 851 aatcttgggtgaaaacttggatcaaatttatc 820
>gb|DQ250640.1| Zea mays plastid coproporphyrinogen III oxidase (cpx1) mRNA, complete cds; nuclear gene for plastid product Length = 1645 Score = 404 bits (204), Expect = e-109 Identities = 390/452 (86%) Strand = Plus / Minus Query: 163 gctaatcacagccactcctttgggtttatgcacgcgtcgagaagcttccactcttcgctc 222 |||||||| | ||| ||||| ||||||||||| || || ||||| ||||| || ||| | Sbjct: 1439 gctaatcagatccaatccttcgggtttatgcaggcttccagaagtttccattcctcggtt 1380 Query: 223 ccttcttcgggtttatggtcatactcccatcgtgcagtgagtggtagggagacgagtata 282 |||||||| |||||||| ||||||| ||||||||| || || || ||||| || ||||| Sbjct: 1379 ccttcttccggtttatgatcatactgccatcgtgctgtaagcggaagggacacaagtatg 1320 Query: 283 ctttcgatccttcccccggtcttgagtccaaatgtggtgccacgatcgtagacaaggttg 342 || || || ||||| || ||||| || |||||||| || ||||| ||||||||||||||| Sbjct: 1319 ctctcaattcttcctccagtctttaggccaaatgttgtaccacggtcgtagacaaggttg 1260 Query: 343 aactccacatagcgacctctccgcacttgctgccatgccttctgctcctcattgaatgga 402 ||||||||||| ||||||||||||| ||||||||||||| | |||||||||||||| ||| Sbjct: 1259 aactccacataacgacctctccgcaattgctgccatgccctgtgctcctcattgaacgga 1200 Query: 403 gtgtctttgcggcgttctatgatgggtatgtatgcaggaattacagaaccggcacattct 462 |||| || || ||||||||||| |||||||| ||||||| |||||| | ||||||||| Sbjct: 1199 gtgttcttccgccgttctatgatcggtatgtacgcaggaagtacagagtccgcacattct 1140 Query: 463 gtggcaaagttcagaagcatgtcttggtcataatcattaagatcatcaaaaaatattccg 522 || |||||||| |||||||| ||||| || ||||||||||| ||||||||||||||||| Sbjct: 1139 gtagcaaagttgagaagcatttcttgatcgtaatcattaaggtcatcaaaaaatattcca 1080 Query: 523 ccaagcccacgtctctcattacgatgcttaatatagaaataatcatcgcaccattttttg 582 || |||||||| | ||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct: 1079 cctagcccacgccgctcattacggtgcttaatatagaaataatcatcacaccattttttg 1020 Query: 583 aatcttgggtaaaaacttggatcgaacttatc 614 |||||||||| |||||||||||| || ||||| Sbjct: 1019 aatcttgggtgaaaacttggatcaaatttatc 988
>gb|AY107747.1| Zea mays PCO087466 mRNA sequence Length = 1036 Score = 396 bits (200), Expect = e-107 Identities = 389/452 (86%) Strand = Plus / Minus Query: 163 gctaatcacagccactcctttgggtttatgcacgcgtcgagaagcttccactcttcgctc 222 |||||||| | ||| ||||| ||||||||||| || || ||||| ||||| || ||| | Sbjct: 787 gctaatcagatccaatccttcgggtttatgcaggcttccagaagtttccattcctcggtt 728 Query: 223 ccttcttcgggtttatggtcatactcccatcgtgcagtgagtggtagggagacgagtata 282 |||||||| |||||||| ||||||| ||||||||| || ||||| ||||| || ||||| Sbjct: 727 ccttcttccggtttatgatcatactgccatcgtgctgtaagtggaagggacacaagtatg 668 Query: 283 ctttcgatccttcccccggtcttgagtccaaatgtggtgccacgatcgtagacaaggttg 342 || || |||||||| || ||||| || |||||||| || ||||| ||||||||||||||| Sbjct: 667 ctctcaatccttcctccagtctttaggccaaatgttgtaccacggtcgtagacaaggttg 608 Query: 343 aactccacatagcgacctctccgcacttgctgccatgccttctgctcctcattgaatgga 402 ||||||||||| ||||||||||||| ||||||||||||| | |||||||| ||||| ||| Sbjct: 607 aactccacataacgacctctccgcaattgctgccatgccctgtgctcctcgttgaacgga 548 Query: 403 gtgtctttgcggcgttctatgatgggtatgtatgcaggaattacagaaccggcacattct 462 |||| || | ||||||||||| |||||||| ||||||| |||||| | ||||||||| Sbjct: 547 gtgttcttcctccgttctatgatcggtatgtacgcaggaagtacagagtccgcacattct 488 Query: 463 gtggcaaagttcagaagcatgtcttggtcataatcattaagatcatcaaaaaatattccg 522 || || ||||| |||||||| ||||| || ||||||||||| ||||||||||||||||| Sbjct: 487 gtagcgaagttgagaagcatttcttgatcgtaatcattaaggtcatcaaaaaatattcca 428 Query: 523 ccaagcccacgtctctcattacgatgcttaatatagaaataatcatcgcaccattttttg 582 ||||||||||| | ||| ||||| ||||||||||||||||||||||| |||||||||||| Sbjct: 427 ccaagcccacgccgctcgttacggtgcttaatatagaaataatcatcacaccattttttg 368 Query: 583 aatcttgggtaaaaacttggatcgaacttatc 614 |||||||||| |||||||||||| || ||||| Sbjct: 367 aatcttgggtgaaaacttggatcaaatttatc 336
>emb|AJ303114.1|HVU303114 Hordeum vulgare partial mRNA for lectin, clone 5A6T7 Length = 379 Score = 161 bits (81), Expect = 3e-36 Identities = 177/209 (84%) Strand = Plus / Minus Query: 241 tcatactcccatcgtgcagtgagtggtagggagacgagtatactttcgatccttcccccg 300 ||||||||||| ||||| || || || ||||| || || ||||| ||||||| ||| || Sbjct: 303 tcatactcccaccgtgccgtcagagggagggaaacaaggatactctcgatccgtcctcca 244 Query: 301 gtcttgagtccaaatgtggtgccacgatcgtagacaaggttgaactccacatagcgacct 360 || ||||| |||||||| ||||||||||| ||||| |||||||| ||||||||||||||| Sbjct: 243 gttttgaggccaaatgttgtgccacgatcatagacgaggttgaattccacatagcgacct 184 Query: 361 ctccgcacttgctgccatgccttctgctcctcattgaatggagtgtctttgcggcgttct 420 ||||| | |||||||||||| | || || || | ||||| |||||||| || |||||| Sbjct: 183 ctccgtagctgctgccatgccctgtgatcttctgtaaatggggtgtctttccgacgttct 124 Query: 421 atgatgggtatgtatgcaggaattacaga 449 |||||||| |||||||||||||||||||| Sbjct: 123 atgatggggatgtatgcaggaattacaga 95
>emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10, complete sequence Length = 150551 Score = 141 bits (71), Expect = 3e-30 Identities = 116/131 (88%) Strand = Plus / Minus Query: 334 acaaggttgaactccacatagcgacctctccgcacttgctgccatgccttctgctcctca 393 ||||||||||||||||||||||||||||||| || ||| ||||||||||| || |||||| Sbjct: 95984 acaaggttgaactccacatagcgacctctcctcagttgttgccatgccttgtgttcctca 95925 Query: 394 ttgaatggagtgtctttgcggcgttctatgatgggtatgtatgcaggaattacagaaccg 453 | ||||||||||| || |||||||| ||||| |||||||||||||||| |||||| | Sbjct: 95924 gtaaatggagtgtccttccggcgttcaatgattggtatgtatgcaggaacaacagaatcc 95865 Query: 454 gcacattctgt 464 ||||||||||| Sbjct: 95864 gcacattctgt 95854 Score = 99.6 bits (50), Expect = 1e-17 Identities = 80/90 (88%) Strand = Plus / Minus Query: 461 ctgtggcaaagttcagaagcatgtcttggtcataatcattaagatcatcaaaaaatattc 520 |||| |||||||| |||||||| ||||| ||||| ||||||||||||||||||||||||| Sbjct: 95554 ctgtagcaaagttgagaagcatttcttgatcatagtcattaagatcatcaaaaaatattc 95495 Query: 521 cgccaagcccacgtctctcattacgatgct 550 | |||||||| || | ||||||||| |||| Sbjct: 95494 caccaagcccccgacgctcattacggtgct 95465 Score = 99.6 bits (50), Expect = 1e-17 Identities = 62/66 (93%) Strand = Plus / Minus Query: 549 cttaatatagaaataatcatcgcaccattttttgaatcttgggtaaaaacttggatcgaa 608 ||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || || Sbjct: 95185 cttaatatagaaataatcatcacaccattttttgaatctcgggtaaaaacttgggtcaaa 95126 Query: 609 cttatc 614 |||||| Sbjct: 95125 cttatc 95120 Score = 65.9 bits (33), Expect = 1e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 241 tcatactcccatcgtgcagtgagtggtagggagacgagtatactttcgatccttcccccg 300 ||||||| |||||||||||| ||||| || || || || ||||| || ||||| ||||| Sbjct: 96154 tcatactgccatcgtgcagtcagtggaagagaaaccagaatactctcaatcctcccccca 96095 Query: 301 gtcttgagtccaaatgtggtgccacgatc 329 |||||||| ||||||||||| || ||||| Sbjct: 96094 gtcttgaggccaaatgtggtaccgcgatc 96066 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 172 agccactcctttgggtttatgcacgcgtcgagaagcttcc 211 ||||| ||||||||||||||||||||||| ||||| |||| Sbjct: 96436 agccattcctttgggtttatgcacgcgtcaagaagtttcc 96397
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 141 bits (71), Expect = 3e-30 Identities = 116/131 (88%) Strand = Plus / Minus Query: 334 acaaggttgaactccacatagcgacctctccgcacttgctgccatgccttctgctcctca 393 ||||||||||||||||||||||||||||||| || ||| ||||||||||| || |||||| Sbjct: 30998611 acaaggttgaactccacatagcgacctctcctcagttgttgccatgccttgtgttcctca 30998552 Query: 394 ttgaatggagtgtctttgcggcgttctatgatgggtatgtatgcaggaattacagaaccg 453 | ||||||||||| || |||||||| ||||| |||||||||||||||| |||||| | Sbjct: 30998551 gtaaatggagtgtccttccggcgttcaatgattggtatgtatgcaggaacaacagaatcc 30998492 Query: 454 gcacattctgt 464 ||||||||||| Sbjct: 30998491 gcacattctgt 30998481 Score = 99.6 bits (50), Expect = 1e-17 Identities = 80/90 (88%) Strand = Plus / Minus Query: 461 ctgtggcaaagttcagaagcatgtcttggtcataatcattaagatcatcaaaaaatattc 520 |||| |||||||| |||||||| ||||| ||||| ||||||||||||||||||||||||| Sbjct: 30998181 ctgtagcaaagttgagaagcatttcttgatcatagtcattaagatcatcaaaaaatattc 30998122 Query: 521 cgccaagcccacgtctctcattacgatgct 550 | |||||||| || | ||||||||| |||| Sbjct: 30998121 caccaagcccccgacgctcattacggtgct 30998092 Score = 99.6 bits (50), Expect = 1e-17 Identities = 62/66 (93%) Strand = Plus / Minus Query: 549 cttaatatagaaataatcatcgcaccattttttgaatcttgggtaaaaacttggatcgaa 608 ||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || || Sbjct: 30997812 cttaatatagaaataatcatcacaccattttttgaatctcgggtaaaaacttgggtcaaa 30997753 Query: 609 cttatc 614 |||||| Sbjct: 30997752 cttatc 30997747 Score = 65.9 bits (33), Expect = 1e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 241 tcatactcccatcgtgcagtgagtggtagggagacgagtatactttcgatccttcccccg 300 ||||||| |||||||||||| ||||| || || || || ||||| || ||||| ||||| Sbjct: 30998781 tcatactgccatcgtgcagtcagtggaagagaaaccagaatactctcaatcctcccccca 30998722 Query: 301 gtcttgagtccaaatgtggtgccacgatc 329 |||||||| ||||||||||| || ||||| Sbjct: 30998721 gtcttgaggccaaatgtggtaccgcgatc 30998693 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 172 agccactcctttgggtttatgcacgcgtcgagaagcttcc 211 ||||| ||||||||||||||||||||||| ||||| |||| Sbjct: 30999063 agccattcctttgggtttatgcacgcgtcaagaagtttcc 30999024
>emb|BX816336.1|CNS0AD0S Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH41ZH02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1371 Score = 91.7 bits (46), Expect = 3e-15 Identities = 109/130 (83%) Strand = Plus / Minus Query: 457 cattctgtggcaaagttcagaagcatgtcttggtcataatcattaagatcatcaaaaaat 516 ||||| |||||||| | ||||||||| || || ||||| ||||||||||||||||||||| Sbjct: 879 cattcagtggcaaattacagaagcatttcctgatcatagtcattaagatcatcaaaaaat 820 Query: 517 attccgccaagcccacgtctctcattacgatgcttaatatagaaataatcatcgcaccat 576 || || ||||| || |||||||||| ||| ||||| || || || || ||||| ||||| Sbjct: 819 atccctccaagtcctcgtctctcatcacggtgcttgatgtaaaagtagtcatcacaccac 760 Query: 577 tttttgaatc 586 || ||||||| Sbjct: 759 ttcttgaatc 750 Score = 71.9 bits (36), Expect = 2e-09 Identities = 69/80 (86%) Strand = Plus / Minus Query: 174 ccactcctttgggtttatgcacgcgtcgagaagcttccactcttcgctcccttcttcggg 233 ||||||||| ||||| ||||| || || | ||||||||||||||| |||| ||||| || Sbjct: 1162 ccactccttcgggttgatgcaagcatccaatagcttccactcttcggtcccctcttccgg 1103 Query: 234 tttatggtcatactcccatc 253 |||||||||||| ||||||| Sbjct: 1102 tttatggtcatattcccatc 1083
>gb|BT014254.1| Lycopersicon esculentum clone 133456F, mRNA sequence Length = 1493 Score = 89.7 bits (45), Expect = 1e-14 Identities = 276/353 (78%) Strand = Plus / Minus Query: 232 ggtttatggtcatactcccatcgtgcagtgagtggtagggagacgagtatactttcgatc 291 |||| |||||| |||||||| |||||| | | ||| || || || || ||||| || ||| Sbjct: 1179 ggttgatggtcgtactcccaacgtgcacttaatggaagagaaacaagaatactctcaatc 1120 Query: 292 cttcccccggtcttgagtccaaatgtggtgccacgatcgtagacaaggttgaactccaca 351 || || || |||||||| |||||||| || ||||| || || || | |||||| |||||| Sbjct: 1119 ctacctcctgtcttgagaccaaatgtagttccacggtcataaaccaagttgaattccaca 1060 Query: 352 tagcgacctctccgcacttgctgccatgccttctgctcctcattgaatggagtgtctttg 411 ||||| || ||||| | || ||||||||||| || || || ||||||| || || || Sbjct: 1059 tagcgccccctccgtaactgttgccatgccttgtgttcatcggtgaatggggtatccttc 1000 Query: 412 cggcgttctatgatgggtatgtatgcaggaattacagaaccggcacattctgtggcaaag 471 | |||||||| ||||| ||||| ||||| || ||| |||||| ||||| | |||| Sbjct: 999 ctcttctctatgataggtatatatgctggaatgacggaattggcacactctgtagaaaag 940 Query: 472 ttcagaagcatgtcttggtcataatcattaagatcatcaaaaaatattccgccaagccca 531 |||||||| || || ||||| || || | ||| |||||||| ||||| ||||| || Sbjct: 939 gagagaagcatctcctgatcatagtcgtttaaatcgtcaaaaaaaattcctccaagacct 880 Query: 532 cgtctctcattacgatgcttaatatagaaataatcatcgcaccattttttgaa 584 || ||||||| ||| ||||| ||||||||||||||||| ||||| || ||||| Sbjct: 879 cgcctctcatcacggtgctttatatagaaataatcatcacaccacttcttgaa 827
>emb|X82831.1|NTCIIIO N.tabacum mRNA for coproporphyrinogen oxidase Length = 1534 Score = 89.7 bits (45), Expect = 1e-14 Identities = 141/173 (81%) Strand = Plus / Minus Query: 208 ttccactcttcgctcccttcttcgggtttatggtcatactcccatcgtgcagtgagtggt 267 ||||| ||||| |||||||||| |||||||||||||||||||||||||| || | ||| Sbjct: 1172 ttccattcttcagtcccttcttctggtttatggtcatactcccatcgtgccgttaatgga 1113 Query: 268 agggagacgagtatactttcgatccttcccccggtcttgagtccaaatgtggtgccacga 327 || || || || || || || ||||| || || |||||||| |||||||| || ||||| Sbjct: 1112 agagatacaagaatgctctcaatcctgcctcctgtcttgagaccaaatgtagttccacgg 1053 Query: 328 tcgtagacaaggttgaactccacatagcgacctctccgcacttgctgccatgc 380 || || || | |||||| ||||||||||| || ||||| | ||| |||||||| Sbjct: 1052 tcataaaccaagttgaattccacatagcggcccctccgtagttgttgccatgc 1000 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 475 agaagcatgtcttggtcataatcattaagatcatcaaaaaatattccgccaagcccacgt 534 |||||||| ||||| || || || || | |||||||||||||||||| ||||| || || Sbjct: 905 agaagcatttcttgatcgtagtcgttgaaatcatcaaaaaatattcctccaagacctcgc 846 Query: 535 ctctcattacgatgcttaatatagaaata 563 ||||||| ||||||||||||||||||||| Sbjct: 845 ctctcatcacgatgcttaatatagaaata 817
>ref|NM_100230.3| Arabidopsis thaliana LIN2 (LESION INITIATION 2); coproporphyrinogen oxidase AT1G03475 (LIN2) mRNA, complete cds Length = 1449 Score = 83.8 bits (42), Expect = 6e-13 Identities = 108/130 (83%) Strand = Plus / Minus Query: 457 cattctgtggcaaagttcagaagcatgtcttggtcataatcattaagatcatcaaaaaat 516 ||||| |||||||| ||||||||| || || ||||| ||||||||||||||||||||| Sbjct: 908 cattcagtggcaaatgacagaagcatttcctgatcatagtcattaagatcatcaaaaaat 849 Query: 517 attccgccaagcccacgtctctcattacgatgcttaatatagaaataatcatcgcaccat 576 || || ||||| || |||||||||| ||| ||||| || || || || ||||| ||||| Sbjct: 848 atccctccaagtcctcgtctctcatcacggtgcttgatgtaaaagtagtcatcacaccac 789 Query: 577 tttttgaatc 586 || ||||||| Sbjct: 788 ttcttgaatc 779 Score = 71.9 bits (36), Expect = 2e-09 Identities = 69/80 (86%) Strand = Plus / Minus Query: 174 ccactcctttgggtttatgcacgcgtcgagaagcttccactcttcgctcccttcttcggg 233 ||||||||| ||||| ||||| || || | ||||||||||||||| |||| ||||| || Sbjct: 1192 ccactccttcgggttgatgcaagcatccaatagcttccactcttcggtcccctcttccgg 1133 Query: 234 tttatggtcatactcccatc 253 |||||||||||| ||||||| Sbjct: 1132 tttatggtcatattcccatc 1113
>gb|AY113166.1| Arabidopsis thaliana At1g03480/F21B7_24 mRNA, complete cds Length = 903 Score = 83.8 bits (42), Expect = 6e-13 Identities = 108/130 (83%) Strand = Plus / Minus Query: 457 cattctgtggcaaagttcagaagcatgtcttggtcataatcattaagatcatcaaaaaat 516 ||||| |||||||| ||||||||| || || ||||| ||||||||||||||||||||| Sbjct: 614 cattcagtggcaaatgacagaagcatttcctgatcatagtcattaagatcatcaaaaaat 555 Query: 517 attccgccaagcccacgtctctcattacgatgcttaatatagaaataatcatcgcaccat 576 || || ||||| || |||||||||| ||| ||||| || || || || ||||| ||||| Sbjct: 554 atccctccaagtcctcgtctctcatcacggtgcttgatgtaaaagtagtcatcacaccac 495 Query: 577 tttttgaatc 586 || ||||||| Sbjct: 494 ttcttgaatc 485 Score = 71.9 bits (36), Expect = 2e-09 Identities = 69/80 (86%) Strand = Plus / Minus Query: 174 ccactcctttgggtttatgcacgcgtcgagaagcttccactcttcgctcccttcttcggg 233 ||||||||| ||||| ||||| || || | ||||||||||||||| |||| ||||| || Sbjct: 897 ccactccttcgggttgatgcaagcatccaatagcttccactcttcggtcccctcttccgg 838 Query: 234 tttatggtcatactcccatc 253 |||||||||||| ||||||| Sbjct: 837 tttatggtcatattcccatc 818
>gb|AF375424.1| Arabidopsis thaliana At1g03480/F21B7_24 mRNA, complete cds Length = 1183 Score = 83.8 bits (42), Expect = 6e-13 Identities = 108/130 (83%) Strand = Plus / Minus Query: 457 cattctgtggcaaagttcagaagcatgtcttggtcataatcattaagatcatcaaaaaat 516 ||||| |||||||| ||||||||| || || ||||| ||||||||||||||||||||| Sbjct: 642 cattcagtggcaaatgacagaagcatttcctgatcatagtcattaagatcatcaaaaaat 583 Query: 517 attccgccaagcccacgtctctcattacgatgcttaatatagaaataatcatcgcaccat 576 || || ||||| || |||||||||| ||| ||||| || || || || ||||| ||||| Sbjct: 582 atccctccaagtcctcgtctctcatcacggtgcttgatgtaaaagtagtcatcacaccac 523 Query: 577 tttttgaatc 586 || ||||||| Sbjct: 522 ttcttgaatc 513 Score = 71.9 bits (36), Expect = 2e-09 Identities = 69/80 (86%) Strand = Plus / Minus Query: 174 ccactcctttgggtttatgcacgcgtcgagaagcttccactcttcgctcccttcttcggg 233 ||||||||| ||||| ||||| || || | ||||||||||||||| |||| ||||| || Sbjct: 925 ccactccttcgggttgatgcaagcatccaatagcttccactcttcggtcccctcttccgg 866 Query: 234 tttatggtcatactcccatc 253 |||||||||||| ||||||| Sbjct: 865 tttatggtcatattcccatc 846
>emb|BX817034.1|CNS0AD9D Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH81ZH06 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1393 Score = 83.8 bits (42), Expect = 6e-13 Identities = 108/130 (83%) Strand = Plus / Minus Query: 457 cattctgtggcaaagttcagaagcatgtcttggtcataatcattaagatcatcaaaaaat 516 ||||| |||||||| ||||||||| || || ||||| ||||||||||||||||||||| Sbjct: 908 cattcagtggcaaatgacagaagcatttcctgatcatagtcattaagatcatcaaaaaat 849 Query: 517 attccgccaagcccacgtctctcattacgatgcttaatatagaaataatcatcgcaccat 576 || || ||||| || |||||||||| ||| ||||| || || || || ||||| ||||| Sbjct: 848 atccctccaagtcctcgtctctcatcacggtgcttgatgtaaaagtagtcatcacaccac 789 Query: 577 tttttgaatc 586 || ||||||| Sbjct: 788 ttcttgaatc 779 Score = 71.9 bits (36), Expect = 2e-09 Identities = 69/80 (86%) Strand = Plus / Minus Query: 174 ccactcctttgggtttatgcacgcgtcgagaagcttccactcttcgctcccttcttcggg 233 ||||||||| ||||| ||||| || || | ||||||||||||||| |||| ||||| || Sbjct: 1191 ccactccttcgggttgatgcaagcatccaatagcttccactcttcggtcccctcttccgg 1132 Query: 234 tttatggtcatactcccatc 253 |||||||||||| ||||||| Sbjct: 1131 tttatggtcatattcccatc 1112
>emb|BX814877.1|CNS0AD06 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS15ZC07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1393 Score = 83.8 bits (42), Expect = 6e-13 Identities = 108/130 (83%) Strand = Plus / Minus Query: 457 cattctgtggcaaagttcagaagcatgtcttggtcataatcattaagatcatcaaaaaat 516 ||||| |||||||| ||||||||| || || ||||| ||||||||||||||||||||| Sbjct: 884 cattcagtggcaaatgacagaagcatttcctgatcatagtcattaagatcatcaaaaaat 825 Query: 517 attccgccaagcccacgtctctcattacgatgcttaatatagaaataatcatcgcaccat 576 || || ||||| || |||||||||| ||| ||||| || || || || ||||| ||||| Sbjct: 824 atccctccaagtcctcgtctctcatcacggtgcttgatgtaaaagtagtcatcacaccac 765 Query: 577 tttttgaatc 586 || ||||||| Sbjct: 764 ttcttgaatc 755 Score = 79.8 bits (40), Expect = 1e-11 Identities = 70/80 (87%) Strand = Plus / Minus Query: 174 ccactcctttgggtttatgcacgcgtcgagaagcttccactcttcgctcccttcttcggg 233 ||||||||| ||||| ||||| ||||| | ||||||||||||||| |||| ||||| || Sbjct: 1166 ccactccttcgggttgatgcaagcgtccaatagcttccactcttcggtcccctcttccgg 1107 Query: 234 tttatggtcatactcccatc 253 |||||||||||| ||||||| Sbjct: 1106 tttatggtcatattcccatc 1087
>emb|BX815516.1|CNS0ACXE Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS69ZE11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1292 Score = 83.8 bits (42), Expect = 6e-13 Identities = 108/130 (83%) Strand = Plus / Minus Query: 457 cattctgtggcaaagttcagaagcatgtcttggtcataatcattaagatcatcaaaaaat 516 ||||| |||||||| ||||||||| || || ||||| ||||||||||||||||||||| Sbjct: 830 cattcagtggcaaatgacagaagcatttcctgatcatagtcattaagatcatcaaaaaat 771 Query: 517 attccgccaagcccacgtctctcattacgatgcttaatatagaaataatcatcgcaccat 576 || || ||||| || |||||||||| ||| ||||| || || || || ||||| ||||| Sbjct: 770 atccctccaagtcctcgtctctcatcacggtgcttgatgtaaaagtagtcatcacaccac 711 Query: 577 tttttgaatc 586 || ||||||| Sbjct: 710 ttcttgaatc 701 Score = 71.9 bits (36), Expect = 2e-09 Identities = 69/80 (86%) Strand = Plus / Minus Query: 174 ccactcctttgggtttatgcacgcgtcgagaagcttccactcttcgctcccttcttcggg 233 ||||||||| ||||| ||||| || || | ||||||||||||||| |||| ||||| || Sbjct: 1113 ccactccttcgggttgatgcaagcatccaatagcttccactcttcggtcccctcttccgg 1054 Query: 234 tttatggtcatactcccatc 253 |||||||||||| ||||||| Sbjct: 1053 tttatggtcatattcccatc 1034
>emb|AJ420796.1|ATH420796 Arabidopsis thaliana mRNA for coproporphyrinogen III oxidase (hemF gene) Length = 1161 Score = 83.8 bits (42), Expect = 6e-13 Identities = 108/130 (83%) Strand = Plus / Minus Query: 457 cattctgtggcaaagttcagaagcatgtcttggtcataatcattaagatcatcaaaaaat 516 ||||| |||||||| ||||||||| || || ||||| ||||||||||||||||||||| Sbjct: 872 cattcagtggcaaatgacagaagcatttcctgatcatagtcattaagatcatcaaaaaat 813 Query: 517 attccgccaagcccacgtctctcattacgatgcttaatatagaaataatcatcgcaccat 576 || || ||||| || |||||||||| ||| ||||| || || || || ||||| ||||| Sbjct: 812 atccctccaagtcctcgtctctcatcacggtgcttgatgtaaaagtagtcatcacaccac 753 Query: 577 tttttgaatc 586 || ||||||| Sbjct: 752 ttcttgaatc 743 Score = 71.9 bits (36), Expect = 2e-09 Identities = 69/80 (86%) Strand = Plus / Minus Query: 174 ccactcctttgggtttatgcacgcgtcgagaagcttccactcttcgctcccttcttcggg 233 ||||||||| ||||| ||||| || || | ||||||||||||||| |||| ||||| || Sbjct: 1155 ccactccttcgggttgatgcaagcatccaatagcttccactcttcggtcccctcttccgg 1096 Query: 234 tttatggtcatactcccatc 253 |||||||||||| ||||||| Sbjct: 1095 tttatggtcatattcccatc 1076
>dbj|AB044394.1| Arabidopsis thaliana LIN2 mRNA for coproporphyrinogen III oxidase, complete cds Length = 1410 Score = 83.8 bits (42), Expect = 6e-13 Identities = 108/130 (83%) Strand = Plus / Minus Query: 457 cattctgtggcaaagttcagaagcatgtcttggtcataatcattaagatcatcaaaaaat 516 ||||| |||||||| ||||||||| || || ||||| ||||||||||||||||||||| Sbjct: 872 cattcagtggcaaatgacagaagcatttcctgatcatagtcattaagatcatcaaaaaat 813 Query: 517 attccgccaagcccacgtctctcattacgatgcttaatatagaaataatcatcgcaccat 576 || || ||||| || |||||||||| ||| ||||| || || || || ||||| ||||| Sbjct: 812 atccctccaagtcctcgtctctcatcacggtgcttgatgtaaaagtagtcatcacaccac 753 Query: 577 tttttgaatc 586 || ||||||| Sbjct: 752 ttcttgaatc 743 Score = 71.9 bits (36), Expect = 2e-09 Identities = 69/80 (86%) Strand = Plus / Minus Query: 174 ccactcctttgggtttatgcacgcgtcgagaagcttccactcttcgctcccttcttcggg 233 ||||||||| ||||| ||||| || || | ||||||||||||||| |||| ||||| || Sbjct: 1155 ccactccttcgggttgatgcaagcatccaatagcttccactcttcggtcccctcttccgg 1096 Query: 234 tttatggtcatactcccatc 253 |||||||||||| ||||||| Sbjct: 1095 tttatggtcatattcccatc 1076
>ref|NM_116557.4| Arabidopsis thaliana coproporphyrinogen oxidase AT4G03205 transcript variant AT4G03205.1 mRNA, complete cds Length = 1406 Score = 81.8 bits (41), Expect = 2e-12 Identities = 89/105 (84%) Strand = Plus / Minus Query: 474 cagaagcatgtcttggtcataatcattaagatcatcaaaaaatattccgccaagcccacg 533 ||||||||| ||||| ||||| ||||| | ||||||||||||||| || |||||||| || Sbjct: 884 cagaagcatctcttgatcatagtcattcaaatcatcaaaaaatatccctccaagccctcg 825 Query: 534 tctctcattacgatgcttaatatagaaataatcatcgcaccattt 578 ||||||| ||| |||||||| || || || ||||| |||||||| Sbjct: 824 cctctcatcacggtgcttaatgtaaaagtagtcatcacaccattt 780
>gb|AY057708.1| Arabidopsis thaliana At4g03205 mRNA, complete cds Length = 1309 Score = 81.8 bits (41), Expect = 2e-12 Identities = 89/105 (84%) Strand = Plus / Minus Query: 474 cagaagcatgtcttggtcataatcattaagatcatcaaaaaatattccgccaagcccacg 533 ||||||||| ||||| ||||| ||||| | ||||||||||||||| || |||||||| || Sbjct: 884 cagaagcatctcttgatcatagtcattcaaatcatcaaaaaatatccctccaagccctcg 825 Query: 534 tctctcattacgatgcttaatatagaaataatcatcgcaccattt 578 ||||||| ||| |||||||| || || || ||||| |||||||| Sbjct: 824 cctctcatcacggtgcttaatgtaaaagtagtcatcacaccattt 780
>emb|AJ420797.1|ATH420797 Arabidopsis thaliana mRNA for coproporphyrinogen III oxidase (hemF gene) Length = 1160 Score = 81.8 bits (41), Expect = 2e-12 Identities = 89/105 (84%) Strand = Plus / Minus Query: 474 cagaagcatgtcttggtcataatcattaagatcatcaaaaaatattccgccaagcccacg 533 ||||||||| ||||| ||||| ||||| | ||||||||||||||| || |||||||| || Sbjct: 854 cagaagcatctcttgatcatagtcattcaaatcatcaaaaaatatccctccaagccctcg 795 Query: 534 tctctcattacgatgcttaatatagaaataatcatcgcaccattt 578 ||||||| ||| |||||||| || || || ||||| |||||||| Sbjct: 794 cctctcatcacggtgcttaatgtaaaagtagtcatcacaccattt 750
>emb|BX816290.1|CNS0AD7M Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH39ZH08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1357 Score = 77.8 bits (39), Expect = 4e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 457 cattctgtggcaaagttcagaagcatgtcttggtcataatcattaagatcatcaaaaaat 516 ||||| |||||||| ||||||||| || || ||||| ||||||||||||||||||||| Sbjct: 864 cattcagtggcaaatgacagaagcatttcctgatcatagtcattaagatcatcaaaaaat 805 Query: 517 attccgccaagcccacgtctctcattacgatgctt 551 || || ||||| || |||||||||| ||| ||||| Sbjct: 804 atccctccaagtcctcgtctctcatcacggtgctt 770 Score = 71.9 bits (36), Expect = 2e-09 Identities = 69/80 (86%) Strand = Plus / Minus Query: 174 ccactcctttgggtttatgcacgcgtcgagaagcttccactcttcgctcccttcttcggg 233 ||||||||| ||||| ||||| || || | ||||||||||||||| |||| ||||| || Sbjct: 1147 ccactccttcgggttgatgcaagcatccaatagcttccactcttcggtcccctcttccgg 1088 Query: 234 tttatggtcatactcccatc 253 |||||||||||| ||||||| Sbjct: 1087 tttatggtcatattcccatc 1068
>gb|AC002560.2|AC002560 Genomic sequence for Arabidopsis thaliana BAC F21B7 from chromosome I, complete sequence Length = 101176 Score = 73.8 bits (37), Expect = 6e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 474 cagaagcatgtcttggtcataatcattaagatcatcaaaaaatattccgccaagcccacg 533 ||||||||| || || ||||| ||||||||||||||||||||||| || ||||| || || Sbjct: 33699 cagaagcatttcctgatcatagtcattaagatcatcaaaaaatatccctccaagtcctcg 33758 Query: 534 tctctcattacgatgct 550 |||||||| ||| |||| Sbjct: 33759 tctctcatcacggtgct 33775 Score = 46.1 bits (23), Expect = 0.14 Identities = 53/63 (84%) Strand = Plus / Plus Query: 174 ccactcctttgggtttatgcacgcgtcgagaagcttccactcttcgctcccttcttcggg 233 ||||||||| ||||| ||||| || || | ||||||||||||||| |||| ||||| || Sbjct: 33118 ccactccttcgggttgatgcaagcatccaatagcttccactcttcggtcccctcttccgg 33177 Query: 234 ttt 236 ||| Sbjct: 33178 ttt 33180
>emb|BX816928.1|CNS0ADF5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH77ZD05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1265 Score = 69.9 bits (35), Expect = 9e-09 Identities = 68/79 (86%) Strand = Plus / Minus Query: 175 cactcctttgggtttatgcacgcgtcgagaagcttccactcttcgctcccttcttcgggt 234 |||||||| ||||| ||||| || || | ||||||||||||||| |||| ||||| ||| Sbjct: 1174 cactccttcgggttgatgcaagcatccaatagcttccactcttcggtcccctcttccggt 1115 Query: 235 ttatggtcatactcccatc 253 ||||||||||| ||||||| Sbjct: 1114 ttatggtcatattcccatc 1096
>emb|X85015.1|PAHEMFGEN Pseudomonas aeruginosa qor, hemF and aroE genes Length = 3101 Score = 67.9 bits (34), Expect = 4e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 318 ggtgccacgatcgtagacaaggttgaactccacatagcgacc 359 ||||||||||||| |||| ||||||||||||||||||||||| Sbjct: 1977 ggtgccacgatcgaagaccaggttgaactccacatagcgacc 1936
>gb|AE004442.1| Pseudomonas aeruginosa PAO1, section 3 of 529 of the complete genome Length = 10141 Score = 67.9 bits (34), Expect = 4e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 318 ggtgccacgatcgtagacaaggttgaactccacatagcgacc 359 ||||||||||||| |||| ||||||||||||||||||||||| Sbjct: 881 ggtgccacgatcgaagaccaggttgaactccacatagcgacc 840
>ref|NM_116558.2| Arabidopsis thaliana coproporphyrinogen oxidase AT4G03205 transcript variant AT4G03205.2 mRNA, complete cds Length = 1738 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 474 cagaagcatgtcttggtcataatcattaagatcatcaaaaaatattccgccaagcccacg 533 ||||||||| ||||| ||||| ||||| | ||||||||||||||| || |||||||| || Sbjct: 1161 cagaagcatctcttgatcatagtcattcaaatcatcaaaaaatatccctccaagccctcg 1102 Query: 534 tctctcattacgatgct 550 ||||||| ||| |||| Sbjct: 1101 cctctcatcacggtgct 1085
>gb|AC005275.1| Arabidopsis thaliana BAC F4C21 from chromosome IV, top arm, near 17 cM, complete sequence Length = 136335 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 474 cagaagcatgtcttggtcataatcattaagatcatcaaaaaatattccgccaagcccacg 533 ||||||||| ||||| ||||| ||||| | ||||||||||||||| || |||||||| || Sbjct: 46887 cagaagcatctcttgatcatagtcattcaaatcatcaaaaaatatccctccaagccctcg 46828 Query: 534 tctctcattacgatgct 550 ||||||| ||| |||| Sbjct: 46827 cctctcatcacggtgct 46811
>emb|AL161496.2|ATCHRIV8 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 8 Length = 195429 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 474 cagaagcatgtcttggtcataatcattaagatcatcaaaaaatattccgccaagcccacg 533 ||||||||| ||||| ||||| ||||| | ||||||||||||||| || |||||||| || Sbjct: 65259 cagaagcatctcttgatcatagtcattcaaatcatcaaaaaatatccctccaagccctcg 65200 Query: 534 tctctcattacgatgct 550 ||||||| ||| |||| Sbjct: 65199 cctctcatcacggtgct 65183
>emb|X71083.1|GMCOPROX G.max gene for coproporphyrinogen oxidase Length = 4641 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Minus Query: 490 tcataatcattaagatcatcaaaaaatattccgccaagccc 530 ||||| |||||||||||||||||||||||||| |||||||| Sbjct: 3531 tcatagtcattaagatcatcaaaaaatattcctccaagccc 3491
>gb|AY774822.1| Synthetic construct Francisella tularensis clone FLH150846.01X NT02FT1461 gene, complete cds Length = 927 Score = 63.9 bits (32), Expect = 6e-07 Identities = 80/96 (83%) Strand = Plus / Minus Query: 495 atcattaagatcatcaaaaaatattccgccaagcccacgtctctcattacgatgcttaat 554 |||||| | |||||||||||||| || |||| |||||| | ||||| |||||| || | Sbjct: 600 atcatttaaatcatcaaaaaataaaccaccaaccccacgacactcatcacgatgtttgag 541 Query: 555 atagaaataatcatcgcaccattttttgaatcttgg 590 ||| ||||| ||||| ||||||||||||||| |||| Sbjct: 540 ataaaaatactcatcacaccattttttgaattttgg 505
>emb|BX813617.1|CNS0ADFW Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB28ZB04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1357 Score = 63.9 bits (32), Expect = 6e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 174 ccactcctttgggtttatgcacgcgtcgagaagcttccactcttcgctcccttcttcggg 233 ||||||||| ||||| ||||| || || | ||||||||||||||| |||| ||| | || Sbjct: 1150 ccactccttcgggttgatgcaagcatccaatagcttccactcttcggtcccctctgccgg 1091 Query: 234 tttatggtcatactcccatc 253 |||||||||||| ||||||| Sbjct: 1090 tttatggtcatattcccatc 1071 Score = 58.0 bits (29), Expect = 4e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 474 cagaagcatgtcttggtcataatcattaagatcatcaaaaaatattccgccaagcccacg 533 ||||||||| || || | ||| ||||||||||||||||||||||| || ||||| || || Sbjct: 850 cagaagcatttcctgataatagtcattaagatcatcaaaaaatatccctccaagtcctcg 791 Query: 534 tctct 538 ||||| Sbjct: 790 tctct 786
>emb|AJ749949.1| Francisella tularensis subsp. tularensis SCHU S4 complete genome Length = 1892819 Score = 63.9 bits (32), Expect = 6e-07 Identities = 80/96 (83%) Strand = Plus / Minus Query: 495 atcattaagatcatcaaaaaatattccgccaagcccacgtctctcattacgatgcttaat 554 |||||| | |||||||||||||| || |||| |||||| | ||||| |||||| || | Sbjct: 1071932 atcatttaaatcatcaaaaaataaaccaccaaccccacgacactcatcacgatgtttgag 1071873 Query: 555 atagaaataatcatcgcaccattttttgaatcttgg 590 ||| ||||| ||||| ||||||||||||||| |||| Sbjct: 1071872 ataaaaatactcatcacaccattttttgaattttgg 1071837
>dbj|AP006368.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT21K08, TM0191, complete sequence Length = 76693 Score = 63.9 bits (32), Expect = 6e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 475 agaagcatgtcttggtcataatcattaagatcatcaaaaaatattccgccaagccc 530 |||||||| ||||| ||||| ||||| | |||||||||||||||||| |||||||| Sbjct: 74672 agaagcatctcttgatcatagtcattcaaatcatcaaaaaatattcctccaagccc 74617 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 208 ttccactcttcgctcccttcttcgggttt 236 ||||| ||||||||||||||||| ||||| Sbjct: 75248 ttccattcttcgctcccttcttctggttt 75220
>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete genome Length = 3397754 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Plus Query: 504 atcatcaaaaaatattccgccaagcccacgtctctcattacgatgcttaatatagaaata 563 |||||||||||||| ||||||| ||||||| ||||| | ||||||||| | ||||| Sbjct: 1342019 atcatcaaaaaataagccgccaatcccacgtgcttcatttctgtgcttaataaaaaaata 1342078 Query: 564 atcatcgcacca 575 |||||||||||| Sbjct: 1342079 atcatcgcacca 1342090
>emb|CR628337.1| Legionella pneumophila str. Lens complete genome Length = 3345687 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Plus Query: 504 atcatcaaaaaatattccgccaagcccacgtctctcattacgatgcttaatatagaaata 563 |||||||||||||| ||||||| ||||||| ||||| | ||||||||| | ||||| Sbjct: 1364370 atcatcaaaaaataagccgccaatcccacgtgcttcatttctgtgcttaataaaaaaata 1364429 Query: 564 atcatcgcacca 575 |||||||||||| Sbjct: 1364430 atcatcgcacca 1364441
>emb|AM233362.1| Francisella tularensis subsp. holarctica strain LVS complete genome Length = 1895994 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Plus Query: 495 atcattaagatcatcaaaaaatattccgccaagcccacgtctctcattacgatgcttaat 554 |||||| | |||||||||||||| || |||| |||||| ||||| |||||| || | Sbjct: 980924 atcatttaaatcatcaaaaaataaaccaccaaccccacgatactcatcacgatgtttgag 980983 Query: 555 atagaaataatcatcgcaccattttttgaatcttgg 590 ||| ||||| ||||| ||||||||||||||| |||| Sbjct: 980984 ataaaaatactcatcacaccattttttgaattttgg 981019
>emb|BX571863.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 5/17 Length = 349318 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 541 ttacgatgcttaatatagaaataatcatcgcaccattttttgaatcttgggtaaa 595 |||||||| |||||||||||||||| ||| ||||||| ||| || ||||||||| Sbjct: 272518 ttacgatgtttaatatagaaataattatcacaccattctttatattttgggtaaa 272572
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 298 ccggtcttgagtccaaatgtggtgccacgatcgtagacaaggttgaactccacatagcg 356 ||||||||||| || || ||||||| |||||||||| ||||||||||| |||||||| Sbjct: 2705262 ccggtcttgagcccgaagatggtgccgcgatcgtagagcaggttgaactcgacatagcg 2705320
>dbj|AB050118.1| Amaranthus tricolor COPROX mRNA for coproporphyrinogen oxidase, partial cds Length = 480 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 475 agaagcatgtcttggtcataatcattaagatcatcaaaaaatattcc 521 |||||||| ||||||||||| ||||| ||||| |||||||| ||||| Sbjct: 230 agaagcatttcttggtcatagtcatttagatcgtcaaaaaagattcc 184
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 319 gtgccacgatcgtagacaaggttgaactccacatagcg 356 |||||||| |||||||| |||||||||||||| ||||| Sbjct: 29432 gtgccacggtcgtagaccaggttgaactccacgtagcg 29395
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 319 gtgccacgatcgtagacaaggttgaactccacatagcg 356 ||||| || |||||||| |||||||||||||||||||| Sbjct: 875040 gtgccccggtcgtagactaggttgaactccacatagcg 875003
>gb|AY570722.1| Ostreococcus tauri BAMYI (bamy1) gene, complete cds Length = 1809 Score = 50.1 bits (25), Expect = 0.009 Identities = 64/77 (83%) Strand = Plus / Minus Query: 301 gtcttgagtccaaatgtggtgccacgatcgtagacaaggttgaactccacatagcgacct 360 |||||||| || || || ||||| || |||||||| ||||||||||| || |||||||| Sbjct: 1013 gtcttgaggccgaaagtcgtgcctcggtcgtagacgaggttgaactcgacgtagcgaccg 954 Query: 361 ctccgcacttgctgcca 377 | |||| ||||||||| Sbjct: 953 cggcgcatttgctgcca 937
>ref|XM_455911.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F18546g predicted mRNA Length = 1128 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 553 atatagaaataatcatcgcaccattttttgaatcttgggta 593 ||||||||||| |||||||||||||| ||| || ||||||| Sbjct: 740 atatagaaatactcatcgcaccatttcttgtattttgggta 700
>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2602197 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 553 atatagaaataatcatcgcaccattttttgaatcttgggta 593 ||||||||||| |||||||||||||| ||| || ||||||| Sbjct: 1707483 atatagaaatactcatcgcaccatttcttgtattttgggta 1707443
>emb|AJ519802.1|KLA519802 Kluyveromyces lactis hem13 gene for coproporphyrinogen oxidase and rpc11 gene for RNA polymerase III C11 subunit Length = 3412 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 553 atatagaaataatcatcgcaccattttttgaatcttgggta 593 ||||||||||| |||||||||||||| ||| || ||||||| Sbjct: 1802 atatagaaatactcatcgcaccatttcttgtattttgggta 1762
>emb|AJ271631.2|KLA271631 Kluyveromyces lactis partial HEM13 gene for putative coproporphyrinogen oxidase Length = 469 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 553 atatagaaataatcatcgcaccattttttgaatcttgggta 593 ||||||||||| |||||||||||||| ||| || ||||||| Sbjct: 119 atatagaaatactcatcgcaccatttcttgtattttgggta 79
>emb|CR628336.1| Legionella pneumophila str. Paris complete genome Length = 3503610 Score = 48.1 bits (24), Expect = 0.034 Identities = 60/72 (83%) Strand = Plus / Plus Query: 504 atcatcaaaaaatattccgccaagcccacgtctctcattacgatgcttaatatagaaata 563 |||||||||||||| ||||||| |||||| ||||| | ||||||||| | ||||| Sbjct: 1358509 atcatcaaaaaataaaccgccaattccacgtgcttcatttctgtgcttaataaaaaaata 1358568 Query: 564 atcatcgcacca 575 |||||||||||| Sbjct: 1358569 atcatcgcacca 1358580
>gb|DQ311346.1| Bombyx mori coproporphirynogen oxidase mRNA, complete cds Length = 1585 Score = 48.1 bits (24), Expect = 0.034 Identities = 30/32 (93%) Strand = Plus / Minus Query: 556 tagaaataatcatcgcaccattttttgaatct 587 ||||| ||||||||||||||||| |||||||| Sbjct: 781 tagaagtaatcatcgcaccatttcttgaatct 750
>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome Length = 2593857 Score = 48.1 bits (24), Expect = 0.034 Identities = 36/40 (90%) Strand = Plus / Plus Query: 317 tggtgccacgatcgtagacaaggttgaactccacatagcg 356 ||||||| || || |||||||||||||| ||||||||||| Sbjct: 704648 tggtgccgcggtcatagacaaggttgaattccacatagcg 704687
>gb|CP000097.1| Synechococcus sp. CC9902, complete genome Length = 2234828 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 337 aggttgaactccacatagcgacc 359 ||||||||||||||||||||||| Sbjct: 1839519 aggttgaactccacatagcgacc 1839541
>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome Length = 2971517 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 337 aggttgaactccacatagcgacc 359 ||||||||||||||||||||||| Sbjct: 352357 aggttgaactccacatagcgacc 352379
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 46.1 bits (23), Expect = 0.14 Identities = 35/39 (89%) Strand = Plus / Minus Query: 318 ggtgccacgatcgtagacaaggttgaactccacatagcg 356 |||||| || |||||||| || ||||||||||||||||| Sbjct: 4511749 ggtgccgcggtcgtagaccagattgaactccacatagcg 4511711
>gb|AE012523.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 431 of 460 of the complete genome Length = 10029 Score = 46.1 bits (23), Expect = 0.14 Identities = 35/39 (89%) Strand = Plus / Minus Query: 318 ggtgccacgatcgtagacaaggttgaactccacatagcg 356 |||||| || |||||||| |||||||||||||| ||||| Sbjct: 2748 ggtgccgcggtcgtagaccaggttgaactccacgtagcg 2710
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 46.1 bits (23), Expect = 0.14 Identities = 35/39 (89%) Strand = Plus / Minus Query: 318 ggtgccacgatcgtagacaaggttgaactccacatagcg 356 |||||| || |||||||| |||||||||||||| ||||| Sbjct: 4839412 ggtgccgcggtcgtagaccaggttgaactccacgtagcg 4839374
>gb|AF133672.1|AF133672 Chlamydomonas reinhardtii coproporphyrinogen III oxidase precursor (Cpx1) mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 2028 Score = 46.1 bits (23), Expect = 0.14 Identities = 50/59 (84%) Strand = Plus / Minus Query: 298 ccggtcttgagtccaaatgtggtgccacgatcgtagacaaggttgaactccacatagcg 356 |||||||| || || || |||||||| || || ||||| |||||||||||||| ||||| Sbjct: 1127 ccggtcttcaggccgaaggtggtgccgcggtcatagaccaggttgaactccacgtagcg 1069
>gb|AF133671.1|AF133671 Chlamydomonas reinhardtii coproporphyrinogen III oxidase precursor (Cpx1) gene, nuclear gene encoding chloroplast protein, complete cds Length = 4591 Score = 46.1 bits (23), Expect = 0.14 Identities = 50/59 (84%) Strand = Plus / Minus Query: 298 ccggtcttgagtccaaatgtggtgccacgatcgtagacaaggttgaactccacatagcg 356 |||||||| || || || |||||||| || || ||||| |||||||||||||| ||||| Sbjct: 3630 ccggtcttcaggccgaaggtggtgccgcggtcatagaccaggttgaactccacgtagcg 3572
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 46.1 bits (23), Expect = 0.14 Identities = 35/39 (89%) Strand = Plus / Minus Query: 318 ggtgccacgatcgtagacaaggttgaactccacatagcg 356 |||||| || |||||||| || ||||||||||||||||| Sbjct: 4514302 ggtgccgcggtcgtagaccagattgaactccacatagcg 4514264
>gb|AC118208.9| Mus musculus chromosome 18, clone RP24-559H7, complete sequence Length = 164565 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 368 cttgctgccatgccttctgctc 389 |||||||||||||||||||||| Sbjct: 52912 cttgctgccatgccttctgctc 52891
>gb|AE017137.1| Yersinia pestis biovar Medievalis str. 91001 section 11 of 16 of the complete genome Length = 291817 Score = 44.1 bits (22), Expect = 0.54 Identities = 34/38 (89%) Strand = Plus / Minus Query: 544 cgatgcttaatatagaaataatcatcgcaccatttttt 581 ||||| |||||||| ||||| ||||| ||||||||||| Sbjct: 38863 cgatgtttaatataaaaatagtcatcacaccatttttt 38826
>gb|AE009952.1| Yersinia pestis KIM, complete genome Length = 4600755 Score = 44.1 bits (22), Expect = 0.54 Identities = 34/38 (89%) Strand = Plus / Plus Query: 544 cgatgcttaatatagaaataatcatcgcaccatttttt 581 ||||| |||||||| ||||| ||||| ||||||||||| Sbjct: 1609042 cgatgtttaatataaaaatagtcatcacaccatttttt 1609079
>gb|CP000302.1| Shewanella denitrificans OS217, complete genome Length = 4545906 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 331 tagacaaggttgaactccacatagcg 356 |||||||| ||||||||||||||||| Sbjct: 36699 tagacaagattgaactccacatagcg 36674
>gb|AY267654.1| Bigelowiella natans coproporphyrinogen III oxidase mRNA, partial cds; nuclear gene for plastid product Length = 366 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 235 ttatggtcatactcccatcgtgcagt 260 ||||||||||||||||||| |||||| Sbjct: 77 ttatggtcatactcccatcttgcagt 52
>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence Length = 4744671 Score = 44.1 bits (22), Expect = 0.54 Identities = 34/38 (89%) Strand = Plus / Minus Query: 544 cgatgcttaatatagaaataatcatcgcaccatttttt 581 ||||| |||||||| ||||| ||||| ||||||||||| Sbjct: 3253706 cgatgtttaatataaaaatagtcatcacaccatttttt 3253669
>emb|AJ414155.1| Yersinia pestis strain CO92 complete genome; segment 15/20 Length = 205050 Score = 44.1 bits (22), Expect = 0.54 Identities = 34/38 (89%) Strand = Plus / Minus Query: 544 cgatgcttaatatagaaataatcatcgcaccatttttt 581 ||||| |||||||| ||||| ||||| ||||||||||| Sbjct: 10605 cgatgtttaatataaaaatagtcatcacaccatttttt 10568
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 44.1 bits (22), Expect = 0.54 Identities = 34/38 (89%) Strand = Plus / Minus Query: 319 gtgccacgatcgtagacaaggttgaactccacatagcg 356 |||||||| |||||||| ||||||||||| || ||||| Sbjct: 31341 gtgccacggtcgtagaccaggttgaactcaacgtagcg 31304
>dbj|AK113694.1| Ciona intestinalis cDNA, clone:cicl004i13, full insert sequence Length = 1361 Score = 44.1 bits (22), Expect = 0.54 Identities = 28/30 (93%) Strand = Plus / Minus Query: 565 tcatcgcaccattttttgaatcttgggtaa 594 |||||||||||||| |||||| |||||||| Sbjct: 778 tcatcgcaccatttcttgaattttgggtaa 749
>gb|AC161598.4| Mus musculus BAC clone RP23-360G8 from chromosome 7, complete sequence Length = 216748 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 140 gactgaaaaaacaaacaacctcagc 164 ||||||||||| ||||||||||||| Sbjct: 38199 gactgaaaaaaaaaacaacctcagc 38175
>gb|AC127675.4| Mus musculus BAC clone RP24-553O5 from chromosome 7, complete sequence Length = 155097 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 140 gactgaaaaaacaaacaacctcagc 164 ||||||||||| ||||||||||||| Sbjct: 55925 gactgaaaaaaaaaacaacctcagc 55901
>gb|AC124385.3| Mus musculus BAC clone RP24-421A2 from chromosome 1, complete sequence Length = 163778 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 365 gcacttgctgccatgccttctgctc 389 ||||||||||||| ||||||||||| Sbjct: 34970 gcacttgctgccaagccttctgctc 34946
>gb|AC121888.3| Mus musculus BAC clone RP24-142M5 from chromosome 1, complete sequence Length = 158354 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 365 gcacttgctgccatgccttctgctc 389 ||||||||||||| ||||||||||| Sbjct: 129431 gcacttgctgccaagccttctgctc 129407
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 332 agacaaggttgaactccacatagcg 356 |||| |||||||||||||||||||| Sbjct: 2038399 agaccaggttgaactccacatagcg 2038375
>ref|XM_789337.1| PREDICTED: Strongylocentrotus purpuratus similar to Coproporphyrinogen III oxidase (Coproporphyrinogenase) (Coprogen oxidase) (COX) (LOC589702), mRNA Length = 579 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Minus Query: 317 tggtgccacgatcgtagacaaggttgaactccacata 353 |||||||||| || || |||||||||||||| ||||| Sbjct: 427 tggtgccacggtcatatacaaggttgaactctacata 391
>ref|XM_504574.1| Yarrowia lipolytica CLIB122, YALI0E29975g predicted mRNA Length = 1365 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Minus Query: 325 cgatcgtagacaaggttgaactccacatagcgacctc 361 ||||||| ||||||||||||||| || || ||||||| Sbjct: 1205 cgatcgttgacaaggttgaactcgacgtatcgacctc 1169
>gb|AC158342.4| Mus musculus chromosome 1, clone RP23-12H12, complete sequence Length = 224295 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 137 aacgactgaaaaaacaaacaa 157 ||||||||||||||||||||| Sbjct: 125570 aacgactgaaaaaacaaacaa 125590
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 42.1 bits (21), Expect = 2.1 Identities = 48/57 (84%) Strand = Plus / Plus Query: 300 ggtcttgagtccaaatgtggtgccacgatcgtagacaaggttgaactccacatagcg 356 ||||| ||||||||| | ||||| || |||||||| | |||||||||||| ||||| Sbjct: 2935578 ggtctggagtccaaagatcgtgccccggtcgtagaccaagttgaactccacgtagcg 2935634
>gb|AC021011.5| Homo sapiens BAC clone RP11-32K22 from 4, complete sequence Length = 43958 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 496 tcattaagatcatcaaaaaat 516 ||||||||||||||||||||| Sbjct: 3813 tcattaagatcatcaaaaaat 3793
>gb|AC134788.10| Mus musculus chromosome 1, clone RP24-482A14, complete sequence Length = 157535 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 aacgactgaaaaaacaaacaa 157 ||||||||||||||||||||| Sbjct: 98462 aacgactgaaaaaacaaacaa 98442
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Plus Query: 325 cgatcgtagacaaggttgaactccacatagcgacctc 361 ||||||| ||||||||||||||| || || ||||||| Sbjct: 3545693 cgatcgttgacaaggttgaactcgacgtatcgacctc 3545729
>gb|AC153622.11| Mus musculus 6 BAC RP23-301N17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 195335 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 tgctgccatgccttctgctc 389 |||||||||||||||||||| Sbjct: 13212 tgctgccatgccttctgctc 13193
>gb|AC102219.11| Mus musculus chromosome 15, clone RP24-96K14, complete sequence Length = 194425 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 ctacacagagtgaggaacac 130 |||||||||||||||||||| Sbjct: 95063 ctacacagagtgaggaacac 95044
>ref|XM_368183.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG01061.4) partial mRNA Length = 1257 Score = 40.1 bits (20), Expect = 8.4 Identities = 38/44 (86%) Strand = Plus / Minus Query: 304 ttgagtccaaatgtggtgccacgatcgtagacaaggttgaactc 347 ||||| ||||| | ||| |||||||||| ||| ||||||||||| Sbjct: 1118 ttgagcccaaaggcggtaccacgatcgtggaccaggttgaactc 1075
>ref|XM_705922.1| Candida albicans SC5314 coproporphyrinogen III oxidase (CaO19.10321), mRNA Length = 972 Score = 40.1 bits (20), Expect = 8.4 Identities = 35/40 (87%) Strand = Plus / Minus Query: 543 acgatgcttaatatagaaataatcatcgcaccattttttg 582 |||||| || ||| ||||||| ||||| |||||||||||| Sbjct: 594 acgatgtttgataaagaaatattcatcacaccattttttg 555
>ref|XM_705907.1| Candida albicans SC5314 coproporphyrinogen III oxidase. (CaO19.2803), mRNA Length = 972 Score = 40.1 bits (20), Expect = 8.4 Identities = 35/40 (87%) Strand = Plus / Minus Query: 543 acgatgcttaatatagaaataatcatcgcaccattttttg 582 |||||| || ||| ||||||| ||||| |||||||||||| Sbjct: 594 acgatgtttgataaagaaatattcatcacaccattttttg 555
>ref|XM_390915.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG10739.1) partial mRNA Length = 1227 Score = 40.1 bits (20), Expect = 8.4 Identities = 38/44 (86%) Strand = Plus / Minus Query: 304 ttgagtccaaatgtggtgccacgatcgtagacaaggttgaactc 347 |||||||| |||| || || ||||||| ||||||||||||||| Sbjct: 1088 ttgagtccgaatgctgtaccgcgatcgtggacaaggttgaactc 1045
>gb|AC124171.3| Mus musculus BAC clone RP23-167E23 from chromosome 13, complete sequence Length = 198242 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 370 tgctgccatgccttctgctc 389 |||||||||||||||||||| Sbjct: 35824 tgctgccatgccttctgctc 35843
>gb|AC123044.4| Mus musculus BAC clone RP24-548B7 from chromosome 5, complete sequence Length = 184772 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 481 atgtcttggtcataatcattaaga 504 |||||||||||| ||||||||||| Sbjct: 50135 atgtcttggtcacaatcattaaga 50112
>emb|AL731777.11| Human DNA sequence from clone RP11-482L14 on chromosome 6 Contains a cytochrome c (HCS) pseudogene, complete sequence Length = 130110 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 144 gaaaaaacaaacaacctcagctaa 167 ||||||||||||||||||| |||| Sbjct: 73383 gaaaaaacaaacaacctcacctaa 73406
>gb|AY156932.1| Lactococcus lactis subsp. cremoris strain MG1363 folate gene cluster, partial sequence Length = 7978 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 acagccactcctttgggttt 189 |||||||||||||||||||| Sbjct: 3969 acagccactcctttgggttt 3950
>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome Length = 5373180 Score = 40.1 bits (20), Expect = 8.4 Identities = 38/44 (86%) Strand = Plus / Minus Query: 538 tcattacgatgcttaatatagaaataatcatcgcaccatttttt 581 |||| ||| ||||| | ||||||||| ||||| ||||||||||| Sbjct: 4197074 tcatcacggtgctttaaatagaaatactcatcacaccatttttt 4197031
>emb|BX883044.1| Rattus norvegicus chromosome 20, major histocompatibility complex, assembled from 40 BACs, strain Brown Norway (BN/ssNHsd), RT1n haplotype; segment 3/11 Length = 340493 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 aactacacatggctacacag 118 |||||||||||||||||||| Sbjct: 195200 aactacacatggctacacag 195219
>emb|BX572597.1| Rhodopseudomonas palustris CGA009 complete genome; segment 5/16 Length = 349737 Score = 40.1 bits (20), Expect = 8.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 319 gtgccacgatcgtagacaaggttgaactccacatag 354 ||||| |||||||||| ||||||||||| |||||| Sbjct: 286605 gtgccgcgatcgtagagcaggttgaactcgacatag 286570
>emb|BX321860.1| Nitrosomonas europaea ATCC 19718, complete genome; segment 5/10 Length = 303050 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 496 tcattaagatcatcaaaaaatatt 519 |||||| ||||||||||||||||| Sbjct: 140321 tcattacgatcatcaaaaaatatt 140344
>emb|AL645570.13| Mouse DNA sequence from clone RP23-377H12 on chromosome 11 Contains two novel genes, the 3' end of the Meis1 gene for myeloid ecotropic viral integration site 1 and two CpG islands, complete sequence Length = 190198 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 acgactgaaaaaacaaacaa 157 |||||||||||||||||||| Sbjct: 35638 acgactgaaaaaacaaacaa 35657
>dbj|AB226229.1| Aspergillus oryzae cDNA, contig sequence: AoEST3088 Length = 1660 Score = 40.1 bits (20), Expect = 8.4 Identities = 35/40 (87%) Strand = Plus / Minus Query: 317 tggtgccacgatcgtagacaaggttgaactccacatagcg 356 |||||||||| || || || |||||||| ||||||||||| Sbjct: 1304 tggtgccacggtcataaaccaggttgaattccacatagcg 1265
>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012 Length = 2668010 Score = 40.1 bits (20), Expect = 8.4 Identities = 35/40 (87%) Strand = Plus / Minus Query: 317 tggtgccacgatcgtagacaaggttgaactccacatagcg 356 |||||||||| || || || |||||||| ||||||||||| Sbjct: 2587110 tggtgccacggtcataaaccaggttgaattccacatagcg 2587071
>ref|NM_080038.2| Drosophila melanogaster Coproporphyrinogen oxidase CG3433-RA (Coprox), mRNA Length = 1388 Score = 40.1 bits (20), Expect = 8.4 Identities = 35/40 (87%) Strand = Plus / Minus Query: 317 tggtgccacgatcgtagacaaggttgaactccacatagcg 356 |||||||||||||||||| | ||||||||||| ||||| Sbjct: 1114 tggtgccacgatcgtagatcaaattgaactccacgtagcg 1075
>gb|AC009638.9| Homo sapiens chromosome 11, clone RP11-47K5, complete sequence Length = 157610 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 ttaagatcatcaaaaaatat 518 |||||||||||||||||||| Sbjct: 12890 ttaagatcatcaaaaaatat 12871
>gb|AC099010.1| Drosophila melanogaster, chromosome 2L, region 27B-27C, BAC clone BACR20B21, complete sequence Length = 166512 Score = 40.1 bits (20), Expect = 8.4 Identities = 35/40 (87%) Strand = Plus / Plus Query: 317 tggtgccacgatcgtagacaaggttgaactccacatagcg 356 |||||||||||||||||| | ||||||||||| ||||| Sbjct: 7285 tggtgccacgatcgtagatcaaattgaactccacgtagcg 7324
>gb|AC008326.9| Drosophila melanogaster, chromosome 2L, region 27C-27C, BAC clone BACR39J17, complete sequence Length = 148780 Score = 40.1 bits (20), Expect = 8.4 Identities = 35/40 (87%) Strand = Plus / Minus Query: 317 tggtgccacgatcgtagacaaggttgaactccacatagcg 356 |||||||||||||||||| | ||||||||||| ||||| Sbjct: 15699 tggtgccacgatcgtagatcaaattgaactccacgtagcg 15660
>dbj|AK051744.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length enriched library, clone:D130071D02 product:unclassifiable, full insert sequence Length = 3200 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 acgactgaaaaaacaaacaa 157 |||||||||||||||||||| Sbjct: 2700 acgactgaaaaaacaaacaa 2681
>gb|AC007977.12|AC007977 Drosophila melanogaster, chromosome 2L, region 27C-27C, BAC clone BACR13J07, complete sequence Length = 174287 Score = 40.1 bits (20), Expect = 8.4 Identities = 35/40 (87%) Strand = Plus / Minus Query: 317 tggtgccacgatcgtagacaaggttgaactccacatagcg 356 |||||||||||||||||| | ||||||||||| ||||| Sbjct: 72401 tggtgccacgatcgtagatcaaattgaactccacgtagcg 72362
>gb|AC159138.6| Mus musculus BAC RP23-315F23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 180124 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 tgctgccatgccttctgctc 389 |||||||||||||||||||| Sbjct: 99242 tgctgccatgccttctgctc 99223
>gb|AC096574.1| Homo sapiens BAC clone RP11-488K22 from 2, complete sequence Length = 58914 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 aaaaggaactacacatggct 112 |||||||||||||||||||| Sbjct: 38849 aaaaggaactacacatggct 38868
>gb|AF160897.2| Drosophila melanogaster GM14838 full insert cDNA Length = 1370 Score = 40.1 bits (20), Expect = 8.4 Identities = 35/40 (87%) Strand = Plus / Minus Query: 317 tggtgccacgatcgtagacaaggttgaactccacatagcg 356 |||||||||||||||||| | ||||||||||| ||||| Sbjct: 1075 tggtgccacgatcgtagatcaaattgaactccacgtagcg 1036
>emb|BX005398.6| Zebrafish DNA sequence from clone CH211-207O17, complete sequence Length = 209859 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 546 atgcttaatatagaaataat 565 |||||||||||||||||||| Sbjct: 58621 atgcttaatatagaaataat 58640
>gb|AE003615.3| Drosophila melanogaster chromosome 2L, section 24 of 83 of the complete sequence Length = 270751 Score = 40.1 bits (20), Expect = 8.4 Identities = 35/40 (87%) Strand = Plus / Minus Query: 317 tggtgccacgatcgtagacaaggttgaactccacatagcg 356 |||||||||||||||||| | ||||||||||| ||||| Sbjct: 208895 tggtgccacgatcgtagatcaaattgaactccacgtagcg 208856
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 cacttgctgccatgccttct 385 |||||||||||||||||||| Sbjct: 3313671 cacttgctgccatgccttct 3313690
>emb|AL772401.22| Mouse DNA sequence from clone RP23-49A12 on chromosome 4, complete sequence Length = 179155 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 aagggaagaggcacagcagg 25 |||||||||||||||||||| Sbjct: 145093 aagggaagaggcacagcagg 145112
>emb|AL935163.7| Zebrafish DNA sequence from clone CH211-206K20, complete sequence Length = 158350 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 acgactgaaaaaacaaacaa 157 |||||||||||||||||||| Sbjct: 39637 acgactgaaaaaacaaacaa 39656
>emb|CT009749.1| Medicago truncatula chromosome 5 clone mth2-46e3, COMPLETE SEQUENCE Length = 138861 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 490 tcataatcattaagatcatcaaaa 513 |||||||||||||||||| ||||| Sbjct: 84416 tcataatcattaagatcaacaaaa 84439
>emb|CR628370.28| Zebrafish DNA sequence from clone DKEY-33L16 in linkage group 22, complete sequence Length = 190967 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 546 atgcttaatatagaaataat 565 |||||||||||||||||||| Sbjct: 145839 atgcttaatatagaaataat 145858
>dbj|AP008982.1| Triticum aestivum mitochondrial DNA, complete genome Length = 452528 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 tggctacacagagtgaggaa 127 |||||||||||||||||||| Sbjct: 244213 tggctacacagagtgaggaa 244232
>emb|AL831722.8| Mouse DNA sequence from clone RP23-312D15 on chromosome X, complete sequence Length = 148564 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 gaaaaaacaaacaacctcag 163 |||||||||||||||||||| Sbjct: 31828 gaaaaaacaaacaacctcag 31809 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,019,701 Number of Sequences: 3902068 Number of extensions: 6019701 Number of successful extensions: 140043 Number of sequences better than 10.0: 117 Number of HSP's better than 10.0 without gapping: 117 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 139333 Number of HSP's gapped (non-prelim): 704 length of query: 614 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 591 effective length of database: 17,143,297,704 effective search space: 10131688943064 effective search space used: 10131688943064 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
