ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags16i18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KADA_METJA (P43409) Adenylate kinase (EC 2.7.4.3) (ATP-AMP trans... 34 0.40
2KADA_AERPE (Q9YDD2) Adenylate kinase (EC 2.7.4.3) (ATP-AMP trans... 32 2.0
3CMTA2_HUMAN (O94983) Calmodulin-binding transcription activator 2 32 2.0
4TOR3A_HUMAN (Q9H497) Torsin-3A precursor (Torsin family 3 member... 32 2.6
5KADA_METIG (P43408) Adenylate kinase (EC 2.7.4.3) (ATP-AMP trans... 31 3.4
6N4BP2_HUMAN (Q86UW6) NEDD4-binding protein 2 (EC 3.-.-.-) (N4BP2... 31 3.4
7YAUA_SCHPO (Q10165) Hypothetical protein C26A3.10 in chromosome I 30 9.8

>KADA_METJA (P43409) Adenylate kinase (EC 2.7.4.3) (ATP-AMP transphosphorylase)|
          Length = 192

 Score = 34.3 bits (77), Expect = 0.40
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = -1

Query: 530 RVITGCGVEGTGKGKIKRSVIELVEKEGIEWHEGNSGTIVLRLGGPREYRFLEH 369
           +V+   GV G G   +    IE ++KEGIE+   N GT++  +   +E   +EH
Sbjct: 4   KVVVIVGVPGVGSTTVTNKAIEELKKEGIEYKIVNFGTVMFEIA--KEEGLVEH 55



to top

>KADA_AERPE (Q9YDD2) Adenylate kinase (EC 2.7.4.3) (ATP-AMP transphosphorylase)|
          Length = 204

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -1

Query: 530 RVITGCGVEGTGKGKIKRSVIELVEKEGIEWHEGNSGTIVL 408
           +V+   GV G GK  + + +  L EKEG++ H  N G+ +L
Sbjct: 8   KVVVVTGVPGVGKTTVIKELQGLAEKEGVKLHIVNFGSFML 48



to top

>CMTA2_HUMAN (O94983) Calmodulin-binding transcription activator 2|
          Length = 1202

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 397 PPSRSTIVPEFPSCHSMPSFSTSSITDRFIFPFPVPSTP 513
           PP  + + PE P  H+ PS S+SS +  F  P  +  +P
Sbjct: 273 PPLIAPLPPELPKAHTSPSSSSSSSSSGFAEPLEIRPSP 311



to top

>TOR3A_HUMAN (Q9H497) Torsin-3A precursor (Torsin family 3 member A)|
           (ATP-dependent interferon-responsive protein)
          Length = 397

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = -1

Query: 626 VTIDLHGQHVKQAMKLLKVHMLVCVCMPSTLLRVITGCGVEGTGKGKIKRSVIELVEKEG 447
           + + LHGQH+ Q + L  V   +    P   L  ++  G  GTGK  + R ++E + ++G
Sbjct: 130 LNVRLHGQHLVQQLVLRTVRGYLETPQPEKAL-ALSFHGWSGTGKNFVARMLVENLYRDG 188

Query: 446 I 444
           +
Sbjct: 189 L 189



to top

>KADA_METIG (P43408) Adenylate kinase (EC 2.7.4.3) (ATP-AMP transphosphorylase)|
          Length = 192

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -1

Query: 530 RVITGCGVEGTGKGKIKRSVIELVEKEGIEWHEGNSGTIVLRL 402
           +V+   GV G G   + +  IE +++EGIE+   N GT++  +
Sbjct: 4   KVVVVTGVPGVGGTTLTQKTIEKLKEEGIEYKMVNFGTVMFEV 46



to top

>N4BP2_HUMAN (Q86UW6) NEDD4-binding protein 2 (EC 3.-.-.-) (N4BP2) (BCL-3-binding|
            protein)
          Length = 1770

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 10/117 (8%)
 Frame = -1

Query: 722  EXGKHYRELGRKEDEKASREIFEARNKHITNTVTIDLHGQHVKQAMKLLKVHMLVCVCMP 543
            + G  + +  ++ +  A+ EIFE  N  +     +DLHG HV +A++    H++  +   
Sbjct: 1657 QQGTLHEQKMKEANHLAAIEIFEKVNASLLPQNVLDLHGLHVDEALE----HLMRVLEKK 1712

Query: 542  S---------TLLRVITGCGVEGT-GKGKIKRSVIELVEKEGIEWHEGNSGTIVLRL 402
            +           L VITG G     G  +IK +VI+ +      + E   G + + L
Sbjct: 1713 TEEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSEIKPGCLKVML 1769



to top

>YAUA_SCHPO (Q10165) Hypothetical protein C26A3.10 in chromosome I|
          Length = 923

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 304 KSMSDSTKKRRGEALT*SESLSCSRKRYSLGPPSRSTIVPEFP 432
           K+   +T++ +G  +  S+ +  S +  S+ PPS S I P FP
Sbjct: 439 KTKWSTTRRDKGREMHRSQVIQTSGRPKSMAPPSPSPISPSFP 481


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,341,864
Number of Sequences: 219361
Number of extensions: 2118465
Number of successful extensions: 5569
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5567
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7422931207
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top