ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags16i14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TOXR_VIBPA (Q05938) Cholera toxin homolog transcriptional activator 30 3.3
2MTH_DROSI (P83120) G-protein coupled receptor Mth precursor (Pro... 30 5.6

>TOXR_VIBPA (Q05938) Cholera toxin homolog transcriptional activator|
          Length = 292

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = -3

Query: 536 EVRDSDLVKDVETIAKGLAEASGDLRRLKSSMLTPENSDLIKQSIFTLIFTLKNIESISS 357
           EV DS L + + T+ K           LK S  +PE    + +  + LI T++ +  +SS
Sbjct: 70  EVDDSSLTQAISTLRK----------MLKDSTKSPEFVKTVPKRGYQLICTVERLSPLSS 119

Query: 356 DISGFTGDEATRQN 315
           D S    +E    N
Sbjct: 120 DSSSIEVEEPASDN 133



to top

>MTH_DROSI (P83120) G-protein coupled receptor Mth precursor (Protein|
           methuselah)
          Length = 515

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -1

Query: 205 RLKHL*EKLIIVEVCQFFS*YFFCILDIK--SSIYCRCRGVIAGRFLCAARLWLS 47
           +L++L  K  I  +   F  Y F + D+   S  +C+  GV+   F+ AA LWLS
Sbjct: 241 KLQNLHGKCFICYMVCLFMGYLFLLFDLWQISISFCKPAGVLGYFFVMAAFLWLS 295


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,030,885
Number of Sequences: 219361
Number of extensions: 1022867
Number of successful extensions: 2565
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2565
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4200495993
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top