| Clone Name | rbags16i05 |
|---|---|
| Clone Library Name | barley_pub |
>emb|Z34269.1|HVBKACPS4 H.vulgare (pMaW25) mRNA for beta-ketoacyl-ACP synthase Length = 2380 Score = 1253 bits (632), Expect = 0.0 Identities = 634/635 (99%) Strand = Plus / Minus Query: 1 tagtggccccagtaaagttcccacacgactaatccaataacatctggtacaaaaataaga 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1834 tagtggccccagtaaagttcccacacgactaatccaataacatctggtacaaaaataaga 1775 Query: 61 tggacttatgtgcatgtgcaacatctggattaacttgcatgggatatatttgattttgca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1774 tggacttatgtgcatgtgcaacatctggattaacttgcatgggatatatttgattttgca 1715 Query: 121 atacaaaagaaacttaattgatttctttgctcacctatgtagcaatatattctactgagt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1714 atacaaaagaaacttaattgatttctttgctcacctatgtagcaatatattctactgagt 1655 Query: 181 gagctttgtcaaaattccggttccacgacacaatcgtacccataagctagcacaccaaca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1654 gagctttgtcaaaattccggttccacgacacaatcgtacccataagctagcacaccaaca 1595 Query: 241 gagctcaaaagggtgcaaataaaattgatgaattgtgcccaccgaatccaaatgaattcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1594 gagctcaaaagggtgcaaataaaattgatgaattgtgcccaccgaatccaaatgaattcg 1535 Query: 301 acaacgcaactttcacgtcacatctctccttttgtgatcccaccagcaagctgacatcca 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1534 acaacgcaactttcacgtcacatctctccttttgtgatcccaccagcaagctgacatcca 1475 Query: 361 catttttctccggattgtttagattgatattcggatggatccaaccagttcttatagctt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1474 catttttctccggattgtttagattgatattcggatggatccaaccagttcttatagctt 1415 Query: 421 gtatagcanctacagcttctattccacctgcagcacctagcaagtggccagtcatcgact 480 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1414 gtatagcagctacagcttctattccacctgcagcacctagcaagtggccagtcatcgact 1355 Query: 481 ttgttgagtttactcttagctgaggattctggccaaaacagcggcgaagagcttcgaatt 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1354 ttgttgagtttactcttagctgaggattctggccaaaacagcggcgaagagcttcgaatt 1295 Query: 541 ccttcaaatcgcccaactgtgtagatgtagcatgggcatttacgtagttaatgtcttgcc 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1294 ccttcaaatcgcccaactgtgtagatgtagcatgggcatttacgtagttaatgtcttgcc 1235 Query: 601 ttgttactcctgcatcagctagtgcattttcgaca 635 ||||||||||||||||||||||||||||||||||| Sbjct: 1234 ttgttactcctgcatcagctagtgcattttcgaca 1200
>gb|AY106155.1| Zea mays PCO093981 mRNA sequence Length = 2143 Score = 303 bits (153), Expect = 4e-79 Identities = 323/380 (85%) Strand = Plus / Minus Query: 252 ggtgcaaataaaattgatgaattgtgcccaccgaatccaaatgaattcgacaacgcaact 311 |||||||| ||||| ||||| |||||||| || |||||||| || ||||||| ||| || Sbjct: 1858 ggtgcaaacaaaatcgatgagttgtgcccgccaaatccaaacgagttcgacagcgccacc 1799 Query: 312 ttcacgtcacatctctccttttgtgatcccaccagcaagctgacatccacatttttctcc 371 ||||| |||||||||||||| || | |||||||||| ||||||||||| ||||||| Sbjct: 1798 ttcacatcacatctctccttctgcgggcccaccagcatcctgacatccacggttttctct 1739 Query: 372 ggattgtttagattgatattcggatggatccaaccagttcttatagcttgtatagcanct 431 ||||||| | ||||| ||| ||||| | |||||| || |||||||||||||||||| | Sbjct: 1738 ggattgtccaaattgagatttggatgcacccaacctgtccttatagcttgtatagcagca 1679 Query: 432 acagcttctattccacctgcagcacctagcaagtggccagtcatcgactttgttgagttt 491 ||||| ||||||||||| ||||| ||||||| ||||| |||||||||||||||||||| Sbjct: 1678 acagcctctattccaccagcagctcctagcagatggcctgtcatcgactttgttgagttc 1619 Query: 492 actcttagctgaggattctggccaaaacagcggcgaagagcttcgaattccttcaaatcg 551 |||| |||||||||||||||||||||||| ||| |||||||| ||||| |||||||| Sbjct: 1618 actcgtagctgaggattctggccaaaacaacggttgagagcttcaaattctttcaaatca 1559 Query: 552 cccaactgtgtagatgtagcatgggcatttacgtagttaatgtcttgccttgttactcct 611 |||| |||||||||||| ||||||||||||| ||||||||||| | | ||||||||||| Sbjct: 1558 cccatctgtgtagatgttgcatgggcatttatatagttaatgtcctcctttgttactcct 1499 Query: 612 gcatcagctagtgcattttc 631 | ||| |||| ||| ||||| Sbjct: 1498 gaatctgctaatgcgttttc 1479
>ref|XM_479165.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2360 Score = 206 bits (104), Expect = 6e-50 Identities = 313/383 (81%) Strand = Plus / Minus Query: 249 aagggtgcaaataaaattgatgaattgtgcccaccgaatccaaatgaattcgacaacgca 308 ||||||||||| | ||||||||| ||||||||||| ||||||||||| || |||| || Sbjct: 1827 aagggtgcaaacagaattgatgagttgtgcccaccaaatccaaatgagtttgacagtgcc 1768 Query: 309 actttcacgtcacatctctccttttgtgatcccaccagcaagctgacatccacatttttc 368 || ||||| | ||||||||||| || || || ||||||| || |||||||| ||||| Sbjct: 1767 acattcactttgcatctctccttctgcgacccgaccagcacgcccacatccactattttc 1708 Query: 369 tccggattgtttagattgatattcggatggatccaaccagttcttatagcttgtatagca 428 || || || | | ||| | ||||||||||| ||| ||||||||||||||||| |||||| Sbjct: 1707 tctgggttctccaaattcagattcggatggacccagccagttcttatagcttgaatagca 1648 Query: 429 nctacagcttctattccacctgcagcacctagcaagtggccagtcatcgactttgttgag 488 | ||||||||||||||||| || ||||||| | || |||||||| || ||||||||| Sbjct: 1647 gcaacagcttctattccaccagctgcacctattagatgtccagtcattgattttgttgag 1588 Query: 489 tttactcttagctgaggattctggccaaaacagcggcgaagagcttcgaattccttcaaa 548 || || ||||||||||| ||||||||||| |||||| || |||||| | ||||||||| Sbjct: 1587 ttcacccttagctgagggttctggccaaagcagcggacaatagcttcatactccttcaaa 1528 Query: 549 tcgcccaactgtgtagatgtagcatgggcatttacgtagttaatgtcttgccttgttact 608 || || |||||||||| || || || ||||| || ||||| || |||| ||||| |||| Sbjct: 1527 tcacctgactgtgtagacgttgcgtgagcattgacatagttgatttcttcccttgctact 1468 Query: 609 cctgcatcagctagtgcattttc 631 |||| |||||| ||||| ||||| Sbjct: 1467 cctgaatcagccagtgccttttc 1445
>dbj|AK067275.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098L18, full insert sequence Length = 2360 Score = 206 bits (104), Expect = 6e-50 Identities = 313/383 (81%) Strand = Plus / Minus Query: 249 aagggtgcaaataaaattgatgaattgtgcccaccgaatccaaatgaattcgacaacgca 308 ||||||||||| | ||||||||| ||||||||||| ||||||||||| || |||| || Sbjct: 1827 aagggtgcaaacagaattgatgagttgtgcccaccaaatccaaatgagtttgacagtgcc 1768 Query: 309 actttcacgtcacatctctccttttgtgatcccaccagcaagctgacatccacatttttc 368 || ||||| | ||||||||||| || || || ||||||| || |||||||| ||||| Sbjct: 1767 acattcactttgcatctctccttctgcgacccgaccagcacgcccacatccactattttc 1708 Query: 369 tccggattgtttagattgatattcggatggatccaaccagttcttatagcttgtatagca 428 || || || | | ||| | ||||||||||| ||| ||||||||||||||||| |||||| Sbjct: 1707 tctgggttctccaaattcagattcggatggacccagccagttcttatagcttgaatagca 1648 Query: 429 nctacagcttctattccacctgcagcacctagcaagtggccagtcatcgactttgttgag 488 | ||||||||||||||||| || ||||||| | || |||||||| || ||||||||| Sbjct: 1647 gcaacagcttctattccaccagctgcacctattagatgtccagtcattgattttgttgag 1588 Query: 489 tttactcttagctgaggattctggccaaaacagcggcgaagagcttcgaattccttcaaa 548 || || ||||||||||| ||||||||||| |||||| || |||||| | ||||||||| Sbjct: 1587 ttcacccttagctgagggttctggccaaagcagcggacaatagcttcatactccttcaaa 1528 Query: 549 tcgcccaactgtgtagatgtagcatgggcatttacgtagttaatgtcttgccttgttact 608 || || |||||||||| || || || ||||| || ||||| || |||| ||||| |||| Sbjct: 1527 tcacctgactgtgtagacgttgcgtgagcattgacatagttgatttcttcccttgctact 1468 Query: 609 cctgcatcagctagtgcattttc 631 |||| |||||| ||||| ||||| Sbjct: 1467 cctgaatcagccagtgccttttc 1445
>gb|BT018837.1| Zea mays clone EL01N0552G07.d mRNA sequence Length = 1930 Score = 131 bits (66), Expect = 3e-27 Identities = 167/201 (83%) Strand = Plus / Minus Query: 248 aaagggtgcaaataaaattgatgaattgtgcccaccgaatccaaatgaattcgacaacgc 307 |||||| ||||| | ||||||||| |||||||||||||| || ||||| || || ||||| Sbjct: 1484 aaagggggcaaagagaattgatgagttgtgcccaccgaagccgaatgagttggataacgc 1425 Query: 308 aactttcacgtcacatctctccttttgtgatcccaccagcaagctgacatccacattttt 367 || ||||| |||||||||||||| |||||||| |||| | || ||||||||| | | Sbjct: 1424 caccttcacctcacatctctccttctgtgatcctaccaagatgcccacatccacagtgtc 1365 Query: 368 ctccggattgtttagattgatattcggatggatccaaccagttcttatagcttgtatagc 427 ||| ||||| | || ||| | ||| ||||||| |||||||||||||||||||||||||| Sbjct: 1364 ctcaggattttctaaattcaaatttggatggacccaaccagttcttatagcttgtataga 1305 Query: 428 anctacagcttctattccacc 448 | | || |||||||||||||| Sbjct: 1304 agcaactgcttctattccacc 1284 Score = 75.8 bits (38), Expect = 2e-10 Identities = 65/74 (87%) Strand = Plus / Minus Query: 558 tgtgtagatgtagcatgggcatttacgtagttaatgtcttgccttgttactcctgcatca 617 |||||||| || ||||||||||| |||||||| || |||| ||||| ||| ||||||||| Sbjct: 1174 tgtgtagaagttgcatgggcattcacgtagttgatttcttcccttgctacccctgcatca 1115 Query: 618 gctagtgcattttc 631 |||||||| ||||| Sbjct: 1114 gctagtgccttttc 1101
>gb|AY103998.1| Zea mays PCO121523 mRNA sequence Length = 2316 Score = 129 bits (65), Expect = 1e-26 Identities = 223/276 (80%) Strand = Plus / Minus Query: 248 aaagggtgcaaataaaattgatgaattgtgcccaccgaatccaaatgaattcgacaacgc 307 |||||| ||||| | ||||||||| |||||||||||||| || ||||| || || ||||| Sbjct: 1845 aaagggggcaaagagaattgatgagttgtgcccaccgaagccgaatgagttggataacgc 1786 Query: 308 aactttcacgtcacatctctccttttgtgatcccaccagcaagctgacatccacattttt 367 || ||||| |||||||||||||| ||||| || |||| | || ||||||||| | | Sbjct: 1785 caccttcacctcacatctctccttctgtgaccctaccaagatgcccacatccacagtgtc 1726 Query: 368 ctccggattgtttagattgatattcggatggatccaaccagttcttatagcttgtatagc 427 ||| ||||| | || ||| | ||| ||||||| |||||||||||||||||||||||||| Sbjct: 1725 ctcaggattttctaaattcaaatttggatggacccaaccagttcttatagcttgtataga 1666 Query: 428 anctacagcttctattccacctgcagcacctagcaagtggccagtcatcgactttgttga 487 | | || |||||||||||||| || || |||| | || |||||||| || || || || Sbjct: 1665 agcaactgcttctattccaccagctgctcctataagatgcccagtcattgatttggtcga 1606 Query: 488 gtttactcttagctgaggattctggccaaaacagcg 523 ||| || || || ||||| ||||||| ||||||||| Sbjct: 1605 gttcaccctcagttgagggttctggcgaaaacagcg 1570 Score = 75.8 bits (38), Expect = 2e-10 Identities = 65/74 (87%) Strand = Plus / Minus Query: 558 tgtgtagatgtagcatgggcatttacgtagttaatgtcttgccttgttactcctgcatca 617 ||||||||||| ||||||||||| |||||||| || |||| ||||| ||| ||||||||| Sbjct: 1535 tgtgtagatgttgcatgggcattcacgtagttgatttcttcccttgctacccctgcatca 1476 Query: 618 gctagtgcattttc 631 ||||| || ||||| Sbjct: 1475 gctagcgccttttc 1462
>emb|Z34268.1|HVBKACPS3 H.vulgare (pMaW22) mRNA for beta-ketoacyl-ACP synthase Length = 1606 Score = 123 bits (62), Expect = 7e-25 Identities = 298/377 (79%) Strand = Plus / Minus Query: 249 aagggtgcaaataaaattgatgaattgtgcccaccgaatccaaatgaattcgacaacgca 308 ||||| ||||| | ||||||||| || |||||||| ||||||||||| || |||| ||| Sbjct: 1522 aagggggcaaacagaattgatgagttatgcccaccaaatccaaatgagtttgacagcgcc 1463 Query: 309 actttcacgtcacatctctccttttgtgatcccaccagcaagctgacatccacatttttc 368 || || || || ||||||||||| | ||||||||||| || || || ||||| ||| Sbjct: 1462 acctttacttcgcatctctccttctctgatcccaccaacacgcccacgtccactactttt 1403 Query: 369 tccggattgtttagattgatattcggatggatccaaccagttcttatagcttgtatagca 428 || || || | | ||| | ||| ||||||| ||||||||||||||||||||||| | | Sbjct: 1402 tctgggttctccaaattcagatttggatggacccaaccagttcttatagcttgtacacaa 1343 Query: 429 nctacagcttctattccacctgcagcacctagcaagtggccagtcatcgactttgttgag 488 | ||||||||||||||||| || || |||| | || |||||||| || ||||||||| Sbjct: 1342 gcaacagcttctattccaccagctgctcctataagatgcccagtcattgattttgttgag 1283 Query: 489 tttactcttagctgaggattctggccaaaacagcggcgaagagcttcgaattccttcaaa 548 || || || |||||||| ||||||||||| || || || ||||| | ||||||||| Sbjct: 1282 ttcaccctcagctgagggttctggccaaagcaacgaacaatggcttcatactccttcaaa 1223 Query: 549 tcgcccaactgtgtagatgtagcatgggcatttacgtagttaatgtcttgccttgttact 608 ||||| | ||||| ||||| ||||| ||||| || ||||| || |||| ||||| ||| Sbjct: 1222 tcgcctgattgtgtggatgttgcatgcgcattcacatagttgatttcttcccttgctacc 1163 Query: 609 cctgcatcagctagtgc 625 |||| |||||| ||||| Sbjct: 1162 cctgaatcagccagtgc 1146
>emb|Z34267.1|HVBKACPS2 H.vulgare (pMaW20) pseudo mRNA for beta-ketoacyl-ACP synthase (partial) Length = 1734 Score = 123 bits (62), Expect = 7e-25 Identities = 298/377 (79%) Strand = Plus / Minus Query: 249 aagggtgcaaataaaattgatgaattgtgcccaccgaatccaaatgaattcgacaacgca 308 ||||| ||||| | ||||||||| || |||||||| ||||||||||| || |||| ||| Sbjct: 1175 aagggggcaaacagaattgatgagttatgcccaccaaatccaaatgagtttgacagcgcc 1116 Query: 309 actttcacgtcacatctctccttttgtgatcccaccagcaagctgacatccacatttttc 368 || || || || ||||||||||| | ||||||||||| || || || ||||| ||| Sbjct: 1115 acctttacttcgcatctctccttctctgatcccaccaacacgcccacgtccactactttt 1056 Query: 369 tccggattgtttagattgatattcggatggatccaaccagttcttatagcttgtatagca 428 || || || | | ||| | ||| ||||||| ||||||||||||||||||||||| | | Sbjct: 1055 tctgggttctccaaattcagatttggatggacccaaccagttcttatagcttgtacacaa 996 Query: 429 nctacagcttctattccacctgcagcacctagcaagtggccagtcatcgactttgttgag 488 | ||||||||||||||||| || || |||| | || |||||||| || ||||||||| Sbjct: 995 gcaacagcttctattccaccagctgctcctataagatgcccagtcattgattttgttgag 936 Query: 489 tttactcttagctgaggattctggccaaaacagcggcgaagagcttcgaattccttcaaa 548 || || || |||||||| ||||||||||| || || || ||||| | ||||||||| Sbjct: 935 ttcaccctcagctgagggttctggccaaagcaacgaacaatggcttcatactccttcaaa 876 Query: 549 tcgcccaactgtgtagatgtagcatgggcatttacgtagttaatgtcttgccttgttact 608 ||||| | ||||| ||||| ||||| ||||| || ||||| || |||| ||||| ||| Sbjct: 875 tcgcctgattgtgtggatgttgcatgcgcattcacatagttgatttcttcccttgctacc 816 Query: 609 cctgcatcagctagtgc 625 |||| |||||| ||||| Sbjct: 815 cctgaatcagccagtgc 799
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 71.9 bits (36), Expect = 2e-09 Identities = 108/132 (81%) Strand = Plus / Plus Query: 500 ctgaggattctggccaaaacagcggcgaagagcttcgaattccttcaaatcgcccaactg 559 |||||| ||||||||||| |||||| || |||||| | ||||||||||| || |||| Sbjct: 25341647 ctgagggttctggccaaagcagcggacaatagcttcatactccttcaaatcacctgactg 25341706 Query: 560 tgtagatgtagcatgggcatttacgtagttaatgtcttgccttgttactcctgcatcagc 619 |||||| || || || ||||| || ||||| || |||| ||||| |||||||| |||||| Sbjct: 25341707 tgtagacgttgcgtgagcattgacatagttgatttcttcccttgctactcctgaatcagc 25341766 Query: 620 tagtgcattttc 631 ||||| ||||| Sbjct: 25341767 cagtgccttttc 25341778 Score = 63.9 bits (32), Expect = 6e-07 Identities = 83/100 (83%) Strand = Plus / Plus Query: 249 aagggtgcaaataaaattgatgaattgtgcccaccgaatccaaatgaattcgacaacgca 308 ||||||||||| | ||||||||| ||||||||||| ||||||||||| || |||| || Sbjct: 25339977 aagggtgcaaacagaattgatgagttgtgcccaccaaatccaaatgagtttgacagtgcc 25340036 Query: 309 actttcacgtcacatctctccttttgtgatcccaccagca 348 || ||||| | ||||||||||| || || || ||||||| Sbjct: 25340037 acattcactttgcatctctccttctgcgacccgaccagca 25340076 Score = 60.0 bits (30), Expect = 9e-06 Identities = 71/85 (83%) Strand = Plus / Plus Query: 418 cttgtatagcanctacagcttctattccacctgcagcacctagcaagtggccagtcatcg 477 |||| |||||| | ||||||||||||||||| || ||||||| | || |||||||| | Sbjct: 25341493 cttgaatagcagcaacagcttctattccaccagctgcacctattagatgtccagtcattg 25341552 Query: 478 actttgttgagtttactcttagctg 502 | ||||||||||| || |||||||| Sbjct: 25341553 attttgttgagttcacccttagctg 25341577 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Plus Query: 389 attcggatggatccaaccagttcttatagc 418 ||||||||||| ||| |||||||||||||| Sbjct: 25340387 attcggatggacccagccagttcttatagc 25340416
>dbj|AP004988.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1056G08 Length = 168173 Score = 71.9 bits (36), Expect = 2e-09 Identities = 108/132 (81%) Strand = Plus / Plus Query: 500 ctgaggattctggccaaaacagcggcgaagagcttcgaattccttcaaatcgcccaactg 559 |||||| ||||||||||| |||||| || |||||| | ||||||||||| || |||| Sbjct: 34737 ctgagggttctggccaaagcagcggacaatagcttcatactccttcaaatcacctgactg 34796 Query: 560 tgtagatgtagcatgggcatttacgtagttaatgtcttgccttgttactcctgcatcagc 619 |||||| || || || ||||| || ||||| || |||| ||||| |||||||| |||||| Sbjct: 34797 tgtagacgttgcgtgagcattgacatagttgatttcttcccttgctactcctgaatcagc 34856 Query: 620 tagtgcattttc 631 ||||| ||||| Sbjct: 34857 cagtgccttttc 34868 Score = 63.9 bits (32), Expect = 6e-07 Identities = 83/100 (83%) Strand = Plus / Plus Query: 249 aagggtgcaaataaaattgatgaattgtgcccaccgaatccaaatgaattcgacaacgca 308 ||||||||||| | ||||||||| ||||||||||| ||||||||||| || |||| || Sbjct: 33067 aagggtgcaaacagaattgatgagttgtgcccaccaaatccaaatgagtttgacagtgcc 33126 Query: 309 actttcacgtcacatctctccttttgtgatcccaccagca 348 || ||||| | ||||||||||| || || || ||||||| Sbjct: 33127 acattcactttgcatctctccttctgcgacccgaccagca 33166 Score = 60.0 bits (30), Expect = 9e-06 Identities = 71/85 (83%) Strand = Plus / Plus Query: 418 cttgtatagcanctacagcttctattccacctgcagcacctagcaagtggccagtcatcg 477 |||| |||||| | ||||||||||||||||| || ||||||| | || |||||||| | Sbjct: 34583 cttgaatagcagcaacagcttctattccaccagctgcacctattagatgtccagtcattg 34642 Query: 478 actttgttgagtttactcttagctg 502 | ||||||||||| || |||||||| Sbjct: 34643 attttgttgagttcacccttagctg 34667 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Plus Query: 389 attcggatggatccaaccagttcttatagc 418 ||||||||||| ||| |||||||||||||| Sbjct: 33477 attcggatggacccagccagttcttatagc 33506
>gb|AF242848.1|AF242848 Brassica napus beta-ketoacyl-acyl carrier protein synthase mRNA, partial cds Length = 1929 Score = 69.9 bits (35), Expect = 1e-08 Identities = 56/63 (88%) Strand = Plus / Minus Query: 459 agcaagtggccagtcatcgactttgttgagtttactcttagctgaggattctggccaaaa 518 |||||||| ||| |||| || |||||||||||||| ||||||| |||||| ||||||||| Sbjct: 1415 agcaagtgtccaatcatagattttgttgagtttacccttagctcaggattttggccaaaa 1356 Query: 519 cag 521 ||| Sbjct: 1355 cag 1353
>emb|Z34266.1|HVBKACPS1 H.vulgare (pMaW21) pseudo mRNA for beta-ketoacyl-ACP synthase (partial) Length = 2249 Score = 60.0 bits (30), Expect = 9e-06 Identities = 117/146 (80%) Strand = Plus / Minus Query: 480 tttgttgagtttactcttagctgaggattctggccaaaacagcggcgaagagcttcgaat 539 ||||||||||| || || |||||||| ||||||||||| || || || ||||| | Sbjct: 2232 tttgttgagttcaccctcagctgagggttctggccaaagcaacgaacaatggcttcatac 2173 Query: 540 tccttcaaatcgcccaactgtgtagatgtagcatgggcatttacgtagttaatgtcttgc 599 |||||||||||||| | ||||| ||||| ||||| ||||| || ||||| || |||| | Sbjct: 2172 tccttcaaatcgcctgattgtgtggatgttgcatgcgcattcacatagttgatttcttcc 2113 Query: 600 cttgttactcctgcatcagctagtgc 625 |||| ||| |||| |||||| ||||| Sbjct: 2112 cttgctacccctgaatcagccagtgc 2087
>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome Length = 3630528 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 435 gcttctattccacctgcagcacctagcaagtggccagtcatcgactt 481 ||||| |||||||| ||||| |||| |||||||||||||||||||| Sbjct: 1255182 gcttcaattccaccagcagctcctaataagtggccagtcatcgactt 1255136
>gb|AY845865.1| Betula pendula plastid beta-ketoacyl ACP synthase mRNA, partial cds; nuclear gene for plastid product Length = 841 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 264 attgatgaattgtgcccaccgaatccaaatgaattcgacaacgcaacttt 313 |||||||| ||||| ||||| || ||||||||||| |||||||| ||||| Sbjct: 512 attgatgagttgtgaccaccaaacccaaatgaattagacaacgccacttt 463
>gb|AC144483.10| Medicago truncatula clone mth2-12f13, complete sequence Length = 105599 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 255 gcaaataaaattgatgaattgtgcccaccgaatccaaatgaattcgacaa 304 ||||||| |||||| |||||||| || || |||||||||||||| ||||| Sbjct: 79048 gcaaatacaattgaagaattgtgtcccccaaatccaaatgaattggacaa 78999
>gb|AF244518.1|AF244518 Glycine max developing seed beta-ketoacyl-ACP synthetase 2 mRNA, complete cds; nuclear gene for proplastid product Length = 2059 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Minus Query: 252 ggtgcaaataaaattgatgaattgtgcccaccgaatccaaatgaattcgacaa 304 |||||||||| ||||| |||||||| || || || ||||||||||||||||| Sbjct: 1518 ggtgcaaatatgattgaagaattgtgacccccaaaaccaaatgaattcgacaa 1466
>gb|AY907523.1| Glycine max plastid 3-keto-acyl-ACP synthase II-A (KASII-A) mRNA, complete cds; nuclear gene for plastid product Length = 1759 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Minus Query: 252 ggtgcaaataaaattgatgaattgtgcccaccgaatccaaatgaattcgacaa 304 |||||||||| ||||| |||||||| || || || ||||||||||||||||| Sbjct: 1489 ggtgcaaatatgattgaagaattgtgacccccaaaaccaaatgaattcgacaa 1437
>gb|AY907522.1| Glycine max plastid 3-keto-acyl-ACP synthase II-B (KASII-B) mRNA, complete cds; nuclear gene for plastid product Length = 2026 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Minus Query: 252 ggtgcaaataaaattgatgaattgtgcccaccgaatccaaatgaattcgacaa 304 |||||||||| ||||| |||||||| || || || ||||||||||||||||| Sbjct: 1494 ggtgcaaatatgattgaagaattgtgacccccaaaaccaaatgaattcgacaa 1442
>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome Length = 2872769 Score = 48.1 bits (24), Expect = 0.036 Identities = 48/56 (85%) Strand = Plus / Minus Query: 435 gcttctattccacctgcagcacctagcaagtggccagtcatcgactttgttgagtt 490 ||||| |||||||||| ||||| || ||||| |||||||| || ||||||||||| Sbjct: 973286 gcttcaattccacctgttgcaccaagtaagtgaccagtcattgattttgttgagtt 973231
>gb|AC147169.2| Xenopus tropicalis clone CH216-149I15, complete sequence Length = 165948 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 396 tggatccaaccagttcttatag 417 |||||||||||||||||||||| Sbjct: 141670 tggatccaaccagttcttatag 141649
>emb|AL512623.5| Human DNA sequence from clone RP11-501G7 on chromosome 13 Contains a novel gene, complete sequence Length = 84015 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 404 accagttcttatagcttgtata 425 |||||||||||||||||||||| Sbjct: 48913 accagttcttatagcttgtata 48934
>emb|BX663501.9| Zebrafish DNA sequence from clone DKEY-117G20 in linkage group 2, complete sequence Length = 88647 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 127 aagaaacttaattgatttcttt 148 |||||||||||||||||||||| Sbjct: 3728 aagaaacttaattgatttcttt 3749
>gb|AF243183.1|AF243183 Glycine max beta-ketoacyl-ACP synthetase I-2 mRNA, complete cds; nuclear gene for proplastid product Length = 1596 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Minus Query: 273 ttgtgcccaccgaatccaaatgaatt 298 ||||| |||||||||||||||||||| Sbjct: 1446 ttgtgtccaccgaatccaaatgaatt 1421
>gb|AF243182.1|AF243182 Glycine max beta-ketoacyl-ACP synthetase I mRNA, complete cds; nuclear gene for proplastid product Length = 1578 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Minus Query: 273 ttgtgcccaccgaatccaaatgaatt 298 ||||| |||||||||||||||||||| Sbjct: 1468 ttgtgtccaccgaatccaaatgaatt 1443
>gb|AE014834.1| Plasmodium falciparum 3D7 chromosome 10 section 6 of 7 of the complete sequence Length = 253001 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 347 caagctgacatccacattttt 367 ||||||||||||||||||||| Sbjct: 104304 caagctgacatccacattttt 104284
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 445 cacctgcagcacctagcaagtggccagtcatcgactt 481 |||| ||||| || ||||||||||| ||||||||||| Sbjct: 4338035 caccggcagcccccagcaagtggccggtcatcgactt 4338071
>ref|XM_728100.1| Plasmodium chabaudi chabaudi oligosacharyl transferase STT3 subunit (PC000621.03.0) partial mRNA Length = 609 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 96 tgcatgggatatatttgattt 116 ||||||||||||||||||||| Sbjct: 311 tgcatgggatatatttgattt 331
>gb|AC183834.3| Pan troglodytes BAC clone CH251-191C17 from chromosome 10, complete sequence Length = 178562 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 39 aacatctggtacaaaaataag 59 ||||||||||||||||||||| Sbjct: 132247 aacatctggtacaaaaataag 132267
>emb|AL672187.12| Human DNA sequence from clone RP11-592B15 on chromosome 10 Contains the gene for a novel protein similar to ARF GTPase-activating protein (MRIP2), a poly (ADP-ribose) glycohydrolase (PARG) pseudogene, a novel gene, gene LOC347774, a novel gene, a ribosomal protein L35a (RPL35A) pseudogene, the TIMM23B gene for translocase of inner mitochondrial membrane 23 homolog B (yeast) and two CpG islands, complete sequence Length = 211435 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 39 aacatctggtacaaaaataag 59 ||||||||||||||||||||| Sbjct: 192032 aacatctggtacaaaaataag 192052
>emb|AL450342.16| Human DNA sequence from clone RP11-481A12 on chromosome 10 Contains a pseudogene similar to part of ral guanine nucleotide dissociation stimulator (RALGDS), the MSMB gene for microseminoprotein beta, the NCOA4 gene for nuclear receptor coactivator 4, the TIMM23 gene for translocase of inner mitochondrial membrane 23, a poly (ADP-ribose) glycohydrolase (PARG) pseudogene, a ribosomal protein L35a (RPL35A) pseudogene and three CpG islands, complete sequence Length = 190015 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 aacatctggtacaaaaataag 59 ||||||||||||||||||||| Sbjct: 82308 aacatctggtacaaaaataag 82288
>gb|AC182581.3| Pan troglodytes BAC clone CH251-711L14 from chromosome 10, complete sequence Length = 197345 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 aacatctggtacaaaaataag 59 ||||||||||||||||||||| Sbjct: 104881 aacatctggtacaaaaataag 104861
>emb|AJ344250.1|CLA344250 Cuphea lanceolata mRNA for beta-ketoacyl-ACP synthase IV (kas4 gene) Length = 2033 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 276 tgcccaccgaatccaaatgaattcgacaa 304 ||||||||||| ||||||||||| ||||| Sbjct: 1616 tgcccaccgaacccaaatgaattggacaa 1588
>gb|AC096757.3| Homo sapiens BAC clone RP11-543H9 from 4, complete sequence Length = 188464 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 318 tcacatctctccttttgtgat 338 ||||||||||||||||||||| Sbjct: 183216 tcacatctctccttttgtgat 183236
>gb|AE001439.1| Helicobacter pylori J99, complete genome Length = 1643831 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 ctcaaaagggtgcaaataaaa 264 ||||||||||||||||||||| Sbjct: 570695 ctcaaaagggtgcaaataaaa 570715
>gb|AF060518.1|AF060518 Cuphea pulcherrima 3-ketoacyl-ACP synthase (Kas4) mRNA, complete cds Length = 2351 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 387 atattcggatggatccaaccagttcttat 415 ||||||||||||||||| ||||| ||||| Sbjct: 1712 atattcggatggatccacccagtccttat 1684 Score = 40.1 bits (20), Expect = 8.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 273 ttgtgcccaccgaatccaaatgaattcgacaa 304 ||||||||||| || ||||||||||| ||||| Sbjct: 1826 ttgtgcccaccaaacccaaatgaattagacaa 1795
>gb|AE000511.1| Helicobacter pylori 26695, complete genome Length = 1667867 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 ctcaaaagggtgcaaataaaa 264 ||||||||||||||||||||| Sbjct: 606962 ctcaaaagggtgcaaataaaa 606982
>gb|U67316.1|CWU67316 Cuphea wrightii beta-ketoacyl-ACP synthase II (CwKASII2) mRNA, complete cds Length = 2215 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 387 atattcggatggatccaaccagttcttat 415 ||||| ||||||||||||||||| ||||| Sbjct: 1728 atatttggatggatccaaccagtccttat 1700
>ref|NM_106154.2| Arabidopsis thaliana FAB1 (FATTY ACID BIOSYNTHESIS 1); fatty-acid synthase AT1G74960 (FAB1) transcript variant AT1G74960.1 mRNA, complete cds Length = 2081 Score = 40.1 bits (20), Expect = 8.7 Identities = 59/72 (81%) Strand = Plus / Minus Query: 450 gcagcacctagcaagtggccagtcatcgactttgttgagtttactcttagctgaggattc 509 ||||| || |||||||| ||| |||| || ||||| || ||||| | |||| |||||| Sbjct: 1681 gcagctcccagcaagtgtccaatcatagattttgtggaatttaccttaagctcaggattt 1622 Query: 510 tggccaaaacag 521 |||||||||||| Sbjct: 1621 tggccaaaacag 1610
>ref|NM_179557.1| Arabidopsis thaliana FAB1 (FATTY ACID BIOSYNTHESIS 1); fatty-acid synthase AT1G74960 (FAB1) transcript variant AT1G74960.2 mRNA, complete cds Length = 2252 Score = 40.1 bits (20), Expect = 8.7 Identities = 59/72 (81%) Strand = Plus / Minus Query: 450 gcagcacctagcaagtggccagtcatcgactttgttgagtttactcttagctgaggattc 509 ||||| || |||||||| ||| |||| || ||||| || ||||| | |||| |||||| Sbjct: 1697 gcagctcccagcaagtgtccaatcatagattttgtggaatttaccttaagctcaggattt 1638 Query: 510 tggccaaaacag 521 |||||||||||| Sbjct: 1637 tggccaaaacag 1626
>gb|U55363.2| Caenorhabditis elegans cosmid ZC404, complete sequence Length = 35511 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 aataacatctggtacaaaaa 55 |||||||||||||||||||| Sbjct: 32747 aataacatctggtacaaaaa 32766
>gb|AC122903.4| Mus musculus BAC clone RP23-44N5 from chromosome 1, complete sequence Length = 169832 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 590 aatgtcttgccttgttactc 609 |||||||||||||||||||| Sbjct: 83935 aatgtcttgccttgttactc 83954
>emb|AL954134.16| Zebrafish DNA sequence from clone CH211-267E7, complete sequence Length = 160551 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 486 gagtttactcttagctgaggattc 509 |||||||||||||||||| ||||| Sbjct: 91173 gagtttactcttagctgatgattc 91150
>ref|XM_758446.1| Theileria parva strain Muguga chromosome 3 cGMP-dependent protein kinase (TP03_0511) partial mRNA Length = 2714 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 caaataaaattgatgaattg 275 |||||||||||||||||||| Sbjct: 5 caaataaaattgatgaattg 24
>emb|BX530031.5| Zebrafish DNA sequence from clone DKEY-175M17 in linkage group 21, complete sequence Length = 160736 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 48 tacaaaaataagatggacttatgt 71 ||||||||||||||| |||||||| Sbjct: 48406 tacaaaaataagatgcacttatgt 48429
>gb|AF318307.1| Arabidopsis thaliana beta-ketoacyl-ACP synthetase 2 mRNA, complete cds; nuclear gene for plastid product Length = 1767 Score = 40.1 bits (20), Expect = 8.7 Identities = 59/72 (81%) Strand = Plus / Minus Query: 450 gcagcacctagcaagtggccagtcatcgactttgttgagtttactcttagctgaggattc 509 ||||| || |||||||| ||| |||| || ||||| || ||||| | |||| |||||| Sbjct: 1505 gcagctcccagcaagtgtccaatcatagattttgtggaatttaccttaagctcaggattt 1446 Query: 510 tggccaaaacag 521 |||||||||||| Sbjct: 1445 tggccaaaacag 1434
>gb|AY097344.1| Arabidopsis thaliana At1g74960/F9E10_19 mRNA, complete cds Length = 1626 Score = 40.1 bits (20), Expect = 8.7 Identities = 59/72 (81%) Strand = Plus / Minus Query: 450 gcagcacctagcaagtggccagtcatcgactttgttgagtttactcttagctgaggattc 509 ||||| || |||||||| ||| |||| || ||||| || ||||| | |||| |||||| Sbjct: 1418 gcagctcccagcaagtgtccaatcatagattttgtggaatttaccttaagctcaggattt 1359 Query: 510 tggccaaaacag 521 |||||||||||| Sbjct: 1358 tggccaaaacag 1347
>gb|AF419598.1|AF419598 Arabidopsis thaliana At1g74960/F9E10_19 mRNA, complete cds Length = 2120 Score = 40.1 bits (20), Expect = 8.7 Identities = 59/72 (81%) Strand = Plus / Minus Query: 450 gcagcacctagcaagtggccagtcatcgactttgttgagtttactcttagctgaggattc 509 ||||| || |||||||| ||| |||| || ||||| || ||||| | |||| |||||| Sbjct: 1584 gcagctcccagcaagtgtccaatcatagattttgtggaatttaccttaagctcaggattt 1525 Query: 510 tggccaaaacag 521 |||||||||||| Sbjct: 1524 tggccaaaacag 1513
>gb|AY054196.1| Arabidopsis thaliana At1g74960/F9E10_19 mRNA, complete cds Length = 2220 Score = 40.1 bits (20), Expect = 8.7 Identities = 59/72 (81%) Strand = Plus / Minus Query: 450 gcagcacctagcaagtggccagtcatcgactttgttgagtttactcttagctgaggattc 509 ||||| || |||||||| ||| |||| || ||||| || ||||| | |||| |||||| Sbjct: 1665 gcagctcccagcaagtgtccaatcatagattttgtggaatttaccttaagctcaggattt 1606 Query: 510 tggccaaaacag 521 |||||||||||| Sbjct: 1605 tggccaaaacag 1594
>gb|AF412045.1|AF412045 Arabidopsis thaliana At1g74960/F9E10_19 mRNA, complete cds Length = 2253 Score = 40.1 bits (20), Expect = 8.7 Identities = 59/72 (81%) Strand = Plus / Minus Query: 450 gcagcacctagcaagtggccagtcatcgactttgttgagtttactcttagctgaggattc 509 ||||| || |||||||| ||| |||| || ||||| || ||||| | |||| |||||| Sbjct: 1698 gcagctcccagcaagtgtccaatcatagattttgtggaatttaccttaagctcaggattt 1639 Query: 510 tggccaaaacag 521 |||||||||||| Sbjct: 1638 tggccaaaacag 1627
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 40.1 bits (20), Expect = 8.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 272 attgtgcccaccgaatccaaatgaattcgaca 303 |||||| |||||||||||||||| ||| |||| Sbjct: 4332858 attgtgaccaccgaatccaaatgtattggaca 4332889
>ref|NM_072324.1| Caenorhabditis elegans ZC404.11 (ZC404.11) mRNA, complete cds Length = 963 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 aataacatctggtacaaaaa 55 |||||||||||||||||||| Sbjct: 915 aataacatctggtacaaaaa 896
>gb|AF007270.1|F2P16 Arabidopsis thaliana BAC F2P16, complete sequence Length = 110946 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 atttgattttgcaatacaaa 127 |||||||||||||||||||| Sbjct: 44961 atttgattttgcaatacaaa 44942 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 atttgattttgcaatacaaa 127 |||||||||||||||||||| Sbjct: 44937 atttgattttgcaatacaaa 44918
>gb|AY879287.1| Ocimum basilicum alcohol dehydrogenase-like protein (ADH2) mRNA, complete cds Length = 978 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 tatgtgcatgtgcaacatct 86 |||||||||||||||||||| Sbjct: 712 tatgtgcatgtgcaacatct 693
>dbj|AB022219.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MKP6 Length = 83233 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 atttgattttgcaatacaaa 127 |||||||||||||||||||| Sbjct: 3651 atttgattttgcaatacaaa 3670
>dbj|AB018121.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MXE2 Length = 86854 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 atttgattttgcaatacaaa 127 |||||||||||||||||||| Sbjct: 81238 atttgattttgcaatacaaa 81219 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 atttgattttgcaatacaaa 127 |||||||||||||||||||| Sbjct: 80981 atttgattttgcaatacaaa 80962
>emb|CR932058.7| Zebrafish DNA sequence from clone DKEY-22M14 in linkage group 11, complete sequence Length = 151285 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 tctccggattgtttagattg 386 |||||||||||||||||||| Sbjct: 41218 tctccggattgtttagattg 41199
>gb|AE016830.1| Enterococcus faecalis V583, complete genome Length = 3218031 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 aacatctggtacaaaaataa 58 |||||||||||||||||||| Sbjct: 2667238 aacatctggtacaaaaataa 2667257
>emb|AL807387.10| Mouse DNA sequence from clone RP23-24J10 on chromosome 4, complete sequence Length = 241148 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 gatttctttgctcacctatg 159 |||||||||||||||||||| Sbjct: 206856 gatttctttgctcacctatg 206875 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,990,144 Number of Sequences: 3902068 Number of extensions: 5990144 Number of successful extensions: 109172 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 108869 Number of HSP's gapped (non-prelim): 293 length of query: 635 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 612 effective length of database: 17,143,297,704 effective search space: 10491698194848 effective search space used: 10491698194848 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)