ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags16h13 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK061852.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-F09, full insert sequence Length = 1415 Score = 172 bits (87), Expect = 9e-40 Identities = 213/255 (83%) Strand = Plus / Minus Query: 362 ttggagtcgagtgcctttacctccttggtgctctccagaaacaattcgagacccttcacc 421 |||||||||| ||||||| ||||| |||||||||||| |||| || |||||||| Sbjct: 983 ttggagtcgattgccttttgttcctttctgctctccagaacagattcaagccccttcact 924 Query: 422 ggcttcttttcagtttgagccaggtccaagagcttgagtttttcatccgcttcttggaaa 481 | ||| |||||| ||||||| || ||||||||||||||||| ||||| || ||| Sbjct: 923 gcctttctttcagactgagccaactctgtgagcttgagtttttcattagcttcctgaaaa 864 Query: 482 aacttggcatttattccctcttttatacctcctgccattcggcagaggtaccatatacca 541 ||||||||||||||||| ||||||| |||||| || ||| ||||||||||||||| |||| Sbjct: 863 aacttggcatttattccatcttttagacctccagctatttggcagaggtaccatacacca 804 Query: 542 gcattagccgcatcctgcttgttgtcaagcagctcgatcttctcttccaatccggctacc 601 ||||||| |||||||| || || ||||||| |||||||||| |||||||||| || ||| Sbjct: 803 gcattagttgcatcctgtttattatcaagcaactcgatcttcccttccaatccagcaacc 744 Query: 602 atctgttgaattgct 616 |||||||| |||||| Sbjct: 743 atctgttggattgct 729
>gb|AC108761.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0087J09, complete sequence Length = 153351 Score = 95.6 bits (48), Expect = 2e-16 Identities = 72/80 (90%) Strand = Plus / Minus Query: 479 aaaaacttggcatttattccctcttttatacctcctgccattcggcagaggtaccatata 538 |||||||||||||||||||| ||||||| |||||| || ||| ||||||||||||||| | Sbjct: 53855 aaaaacttggcatttattccatcttttagacctccagctatttggcagaggtaccataca 53796 Query: 539 ccagcattagccgcatcctg 558 |||||||||| |||||||| Sbjct: 53795 ccagcattagttgcatcctg 53776
>emb|BX510997.9| Zebrafish DNA sequence from clone CH211-253F2 in linkage group 25, complete sequence Length = 104617 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 25 ttaattatttattccttcacttgttta 51 |||||||||||||||||||||| |||| Sbjct: 32787 ttaattatttattccttcacttcttta 32813
>emb|CR925743.18| Zebrafish DNA sequence from clone CH211-107N13 in linkage group 20, complete sequence Length = 161957 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 21 tgttttaattatttattccttcacttgttta 51 ||||||| |||||||||| |||||||||||| Sbjct: 30190 tgttttatttatttattcattcacttgttta 30160
>emb|CR407545.9| Zebrafish DNA sequence from clone CH211-197E20 in linkage group 25, complete sequence Length = 103187 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 25 ttaattatttattccttcacttgttta 51 |||||||||||||||||||||| |||| Sbjct: 62910 ttaattatttattccttcacttcttta 62884
>gb|AC093366.9| Mus musculus chromosome 8, clone RP23-60P23, complete sequence Length = 230236 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 358 aggcttggagtcgagtgcctttacct 383 |||||||||||| ||||||||||||| Sbjct: 193694 aggcttggagtcaagtgcctttacct 193669
>emb|CR753865.8| Zebrafish DNA sequence from clone DKEY-172B2 in linkage group 14, complete sequence Length = 134371 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 21 tgttttaattatttattccttcactt 46 ||||||| |||||||||||||||||| Sbjct: 99929 tgttttatttatttattccttcactt 99954
>emb|X98487.1|LMPGKCG L.mexicana PGKC gene for glycosomal phosphoglycerate kinase Length = 1440 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 561 tgttgtcaagcagctcgatctt 582 |||||||||||||||||||||| Sbjct: 679 tgttgtcaagcagctcgatctt 658
>emb|X98486.1|LMPGKBC L.mexicana PGKB gene for cytosolic phosphoglycerate kinase Length = 1254 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 561 tgttgtcaagcagctcgatctt 582 |||||||||||||||||||||| Sbjct: 679 tgttgtcaagcagctcgatctt 658
>emb|AL662892.11| Mouse DNA sequence from clone RP23-408L15 on chromosome 11 Contains part of a novel gene, a novel gene, a SMT3 (supressor of mif two, 3) homolog 1 (S. cerevisiae) (Smt3h1) pseudogene and a ribosomal protein S12 (Rps12) pseudogene, complete sequence Length = 106145 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 358 aggcttggagtcgagtgcctttacct 383 |||||||||||| ||||||||||||| Sbjct: 4106 aggcttggagtcaagtgcctttacct 4131
>gb|AF339905.1|AF339905S1 Leishmania major phosphoglycerate kinase B and phosphoglycerate kinase C genes, complete cds; and unknown genes Length = 26435 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 561 tgttgtcaagcagctcgatctt 582 |||||||||||||||||||||| Sbjct: 3513 tgttgtcaagcagctcgatctt 3492 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 561 tgttgtcaagcagctcgatctt 582 |||||||||||||||||||||| Sbjct: 847 tgttgtcaagcagctcgatctt 826
>gb|AC132331.3| Mus musculus BAC clone RP24-217D10 from chromosome 12, complete sequence Length = 176940 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 358 aggcttggagtcgagtgcctttacc 382 |||||||||||| |||||||||||| Sbjct: 14768 aggcttggagtcaagtgcctttacc 14744
>emb|CR382377.10| Zebrafish DNA sequence from clone DKEY-238I13 in linkage group 17, complete sequence Length = 105441 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 23 ttttaattatttattccttca 43 ||||||||||||||||||||| Sbjct: 41963 ttttaattatttattccttca 41983
>gb|AC124556.4| Mus musculus BAC clone RP23-246K11 from chromosome 12, complete sequence Length = 202214 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 358 aggcttggagtcgagtgcctttacc 382 |||||||||||| |||||||||||| Sbjct: 163626 aggcttggagtcaagtgcctttacc 163602
>ref|XM_966238.1| PREDICTED: Tribolium castaneum similar to CG11919-PA, isoform A (LOC659974), mRNA Length = 2007 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 22 gttttaattatttattccttcactt 46 ||||||||||||| ||||||||||| Sbjct: 1214 gttttaattatttcttccttcactt 1190
>gb|AC026787.5| Homo sapiens chromosome 5 clone CTD-2143L24, complete sequence Length = 146296 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 27 aattatttattccttcacttgttta 51 ||||||||||| ||||||||||||| Sbjct: 63645 aattatttatttcttcacttgttta 63621
>gb|AC003015.1|AC003015 Human BAC clone GS1-113H23 from 5p15.2, complete sequence Length = 132953 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 27 aattatttattccttcacttgttta 51 ||||||||||| ||||||||||||| Sbjct: 41055 aattatttatttcttcacttgttta 41079
>emb|CT010508.10| Mouse DNA sequence from clone RP23-250G8 on chromosome 9, complete sequence Length = 223547 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 358 aggcttggagtcgagtgcctttacc 382 |||||||||||| |||||||||||| Sbjct: 201302 aggcttggagtcaagtgcctttacc 201278
>emb|AL928966.3| Mouse DNA sequence from clone RP24-388A9 on chromosome 2, complete sequence Length = 173369 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 31 atttattccttcacttgttta 51 ||||||||||||||||||||| Sbjct: 6323 atttattccttcacttgttta 6343
>emb|AL591884.11| Mouse DNA sequence from clone RP23-183N8 on chromosome 2, complete sequence Length = 204495 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 358 aggcttggagtcgagtgcctttacc 382 |||||||||| |||||||||||||| Sbjct: 61439 aggcttggaggcgagtgcctttacc 61463
>emb|CR974467.8| Pig DNA sequence from clone CH242-235B3 on chromosome 17, complete sequence Length = 158975 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 tatttattccttcacttgtt 49 |||||||||||||||||||| Sbjct: 4856 tatttattccttcacttgtt 4837
>emb|CR727815.2|CNS0GOJ1 Tetraodon nigroviridis full-length cDNA Length = 1170 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 aacgttttcgtcggtttctt 333 |||||||||||||||||||| Sbjct: 364 aacgttttcgtcggtttctt 345
>gb|AF036705.2| Caenorhabditis elegans cosmid F37C4, complete sequence Length = 28606 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 aaaacgtgttttaattattt 34 |||||||||||||||||||| Sbjct: 7509 aaaacgtgttttaattattt 7528
>gb|AC163625.5| Mus musculus BAC clone RP23-135K11 from chromosome 8, complete sequence Length = 228750 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 181 caaacaaagcaagcaagaatgcaa 204 ||||||||||||||||||| |||| Sbjct: 70874 caaacaaagcaagcaagaaagcaa 70897
>gb|AC147964.10| Medicago truncatula clone mth2-5i18, complete sequence Length = 134939 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 tttaattatttattccttca 43 |||||||||||||||||||| Sbjct: 131987 tttaattatttattccttca 132006
>emb|AL391357.20| Human DNA sequence from clone RP11-401M16 on chromosome 1 Contains the gene for calcium/calmodulin-dependent protein kinase II (CaMKIINalpha), the gene for a novel protein (FLJ12875), a ribosomal protein S4 X-linked (RPS4X) pseudogene, the CDA gene for cytidine deaminase, the PINK1 gene for PTEN induced putative kinase 1, a novel gene (FLJ00387), the DDOST gene for dolichyl-diphosphooligosaccharide-protein glycosyltransferase and the 3' end of the KIF17 gene for kinesin family member 17, complete sequence Length = 195076 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 177 ctatcaaacaaagcaagcaagaatgcaa 204 |||||||| |||||||||||||| |||| Sbjct: 95829 ctatcaaagaaagcaagcaagaaagcaa 95856
>emb|AL356428.11| Human DNA sequence from clone RP11-343F16 on chromosome 1, complete sequence Length = 174739 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 tttaattatttattccttca 43 |||||||||||||||||||| Sbjct: 17117 tttaattatttattccttca 17098
>emb|AL162377.10| Human DNA sequence from clone RP11-327P2 on chromosome 13 Contains 3 novel genes, a meningioma-expressed antigen 6/11 (MEA6) (MEA11) pseudogene and the 3' end of the ATP7B gene for ATPase, Cu++ transporting, beta polypeptide (Wilson disease), complete sequence Length = 169104 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 cagcacgaggccttctttac 260 |||||||||||||||||||| Sbjct: 60624 cagcacgaggccttctttac 60643
>emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS767 of Debaryomyces hansenii Length = 2336804 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 ttcttctatattttcctatc 181 |||||||||||||||||||| Sbjct: 1988686 ttcttctatattttcctatc 1988667
>gb|AC156039.4| Mus musculus BAC clone RP23-24C2 from chromosome 10, complete sequence Length = 206634 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 acaaagcaagcaagaatgca 203 |||||||||||||||||||| Sbjct: 196494 acaaagcaagcaagaatgca 196513
>gb|AC164650.3| Mus musculus BAC clone RP23-47A4 from chromosome 1, complete sequence Length = 200598 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 tgttttaattatttattcct 40 |||||||||||||||||||| Sbjct: 119549 tgttttaattatttattcct 119568
>emb|AL929295.7| Zebrafish DNA sequence from clone BUSM1-71B9 in linkage group 7 Contains three novel genes similar to cdh1 (epithelial cadherin 1), complete sequence Length = 99338 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 379 tacctccttggtgctctccagaaa 402 ||||||||||| |||||||||||| Sbjct: 2150 tacctccttggcgctctccagaaa 2127
>emb|AL929461.3| Zebrafish DNA sequence from clone BUSM1-180O5 in linkage group 7 Contains two novel genes similar to cdh1 (E-cadherin) and a novel gene for a DNA polymerase, complete sequence Length = 58622 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 379 tacctccttggtgctctccagaaa 402 ||||||||||| |||||||||||| Sbjct: 16745 tacctccttggcgctctccagaaa 16722
>emb|BX897737.7| Zebrafish DNA sequence from clone CH211-200J6 in linkage group 7, complete sequence Length = 64259 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 379 tacctccttggtgctctccagaaa 402 ||||||||||| |||||||||||| Sbjct: 26266 tacctccttggcgctctccagaaa 26243
>gb|AC073591.17| Homo sapiens 12 BAC RP1-97G4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 108030 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 gactccaaaaatacaaagaa 103 |||||||||||||||||||| Sbjct: 17163 gactccaaaaatacaaagaa 17144
>emb|CR388055.6| Zebrafish DNA sequence from clone DKEY-56D12 in linkage group 5, complete sequence Length = 190426 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 aatgcaaaacgtgttttaat 29 |||||||||||||||||||| Sbjct: 58394 aatgcaaaacgtgttttaat 58413
>gb|AC011291.8| Homo sapiens BAC clone RP11-67G7 from 2, complete sequence Length = 150214 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 aaatgactccaaaaatacaa 99 |||||||||||||||||||| Sbjct: 135619 aaatgactccaaaaatacaa 135600
>gb|AC068800.28|AC068800 Homo sapiens 12 BAC RP11-557L8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 89183 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 gactccaaaaatacaaagaa 103 |||||||||||||||||||| Sbjct: 88101 gactccaaaaatacaaagaa 88082
>gb|AC138553.3| Ornithorhynchus anatinus clone OA_Bb-524H4, complete sequence Length = 144677 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 21 tgttttaattatttattccttcacttgt 48 ||||||| ||||||||||| |||||||| Sbjct: 6902 tgttttatttatttattccatcacttgt 6875
>emb|BX322631.8| Zebrafish DNA sequence from clone DKEY-173L11, complete sequence Length = 161710 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 379 tacctccttggtgctctccagaaa 402 ||||||||||| |||||||||||| Sbjct: 120618 tacctccttggcgctctccagaaa 120641
>ref|XM_317666.2| Anopheles gambiae str. PEST ENSANGP00000018515 (ENSANGG00000016026), partial mRNA Length = 1221 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 566 tcaagcagctcgatcttctc 585 |||||||||||||||||||| Sbjct: 926 tcaagcagctcgatcttctc 907
>emb|CR759865.13| Zebrafish DNA sequence from clone CH211-118E11 in linkage group 18, complete sequence Length = 95664 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 tttaattatttattccttca 43 |||||||||||||||||||| Sbjct: 92618 tttaattatttattccttca 92599
>gb|AC133944.4| Mus musculus BAC clone RP24-113L10 from 10, complete sequence Length = 167418 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 acaaagcaagcaagaatgca 203 |||||||||||||||||||| Sbjct: 52586 acaaagcaagcaagaatgca 52567
>gb|AC124759.4| Mus musculus BAC clone RP23-132N7 from 1, complete sequence Length = 200104 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 tgttttaattatttattcct 40 |||||||||||||||||||| Sbjct: 74550 tgttttaattatttattcct 74569
>emb|BX000366.6| Zebrafish DNA sequence from clone CH211-204I4, complete sequence Length = 169542 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 24 tttaattatttattccttcacttgttta 51 |||| ||||||||||||||| ||||||| Sbjct: 158972 tttatttatttattccttcatttgttta 158945
>emb|AL845364.4| Mouse DNA sequence from clone RP23-301M3 on chromosome 4, complete sequence Length = 205273 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 attatttattccttcacttg 47 |||||||||||||||||||| Sbjct: 161259 attatttattccttcacttg 161278 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,715,055 Number of Sequences: 3902068 Number of extensions: 6715055 Number of successful extensions: 131657 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 131507 Number of HSP's gapped (non-prelim): 149 length of query: 619 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 596 effective length of database: 17,143,297,704 effective search space: 10217405431584 effective search space used: 10217405431584 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
