ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags16h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ERG1_PANGI (O48651) Squalene monooxygenase (EC 1.14.99.7) (Squal... 88 6e-18
2ERG12_BRANA (O65726) Squalene monooxygenase 1,2 (EC 1.14.99.7) (... 59 3e-09
3ERG1_HUMAN (Q14534) Squalene monooxygenase (EC 1.14.99.7) (Squal... 59 4e-09
4ERG11_BRANA (O65727) Squalene monooxygenase 1,1 (EC 1.14.99.7) (... 59 5e-09
5ERG11_ARATH (O65404) Squalene monooxygenase 1,1 (EC 1.14.99.7) (... 58 8e-09
6ERG1_MOUSE (P52019) Squalene monooxygenase (EC 1.14.99.7) (Squal... 55 5e-08
7ERG1_RAT (P52020) Squalene monooxygenase (EC 1.14.99.7) (Squalen... 54 1e-07
8ERG12_ARATH (O65402) Squalene monooxygenase 1,2 (EC 1.14.99.7) (... 54 2e-07
9ERG1_CANAL (Q92206) Squalene monooxygenase (EC 1.14.99.7) (Squal... 52 3e-07
10ERG1_SCHPO (Q9C1W3) Probable squalene monooxygenase (EC 1.14.99.... 48 6e-06
11ERG13_ARATH (O65403) Squalene monooxygenase 2 (EC 1.14.99.7) (Sq... 48 6e-06
12ERG1_YEAST (P32476) Squalene monooxygenase (EC 1.14.99.7) (Squal... 45 5e-05
13ERG1_CANGA (O13306) Squalene monooxygenase (EC 1.14.99.7) (Squal... 44 9e-05
14ERG1_ASHGO (Q75F69) Squalene monooxygenase (EC 1.14.99.7) (Squal... 36 0.033

>ERG1_PANGI (O48651) Squalene monooxygenase (EC 1.14.99.7) (Squalene epoxidase)|
           (SE)
          Length = 539

 Score = 88.2 bits (217), Expect = 6e-18
 Identities = 40/49 (81%), Positives = 44/49 (89%)
 Frame = -1

Query: 148 MRQACFDYLSLXGVCSNGPIALLSGLNPRPLSLVAHFFAVAIFGVGRLM 2
           MR ACFDYLSL G+CS GPIALLSGLNPRP+SL  HFFAVAI+GVGRL+
Sbjct: 440 MRNACFDYLSLGGICSQGPIALLSGLNPRPISLFLHFFAVAIYGVGRLL 488



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>ERG12_BRANA (O65726) Squalene monooxygenase 1,2 (EC 1.14.99.7) (Squalene|
           epoxidase 1,2) (SE 1,2)
          Length = 518

 Score = 59.3 bits (142), Expect = 3e-09
 Identities = 25/49 (51%), Positives = 36/49 (73%)
 Frame = -1

Query: 148 MRQACFDYLSLXGVCSNGPIALLSGLNPRPLSLVAHFFAVAIFGVGRLM 2
           MRQ CFDYLS  G  ++G +AL+ G+NPRPLSL  H F +++  +G+L+
Sbjct: 416 MRQGCFDYLSSGGFRTSGLMALIGGMNPRPLSLFYHLFVISLSSIGQLL 464



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>ERG1_HUMAN (Q14534) Squalene monooxygenase (EC 1.14.99.7) (Squalene epoxidase)|
           (SE)
          Length = 574

 Score = 58.9 bits (141), Expect = 4e-09
 Identities = 26/45 (57%), Positives = 33/45 (73%)
 Frame = -1

Query: 148 MRQACFDYLSLXGVCSNGPIALLSGLNPRPLSLVAHFFAVAIFGV 14
           +R+ACF Y  L G C  GP+ LLS L+P PL+L+ HFFAVAI+ V
Sbjct: 487 LRKACFLYFKLGGECVAGPVGLLSVLSPNPLALIGHFFAVAIYAV 531



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>ERG11_BRANA (O65727) Squalene monooxygenase 1,1 (EC 1.14.99.7) (Squalene|
           epoxidase 1,1) (SE 1,1)
          Length = 506

 Score = 58.5 bits (140), Expect = 5e-09
 Identities = 25/49 (51%), Positives = 35/49 (71%)
 Frame = -1

Query: 148 MRQACFDYLSLXGVCSNGPIALLSGLNPRPLSLVAHFFAVAIFGVGRLM 2
           MRQ CFDYLS  G  ++G +ALL G+NPRPLSL+ H   + +  +G+L+
Sbjct: 415 MRQGCFDYLSSGGFRTSGMMALLGGMNPRPLSLIFHLCGITLSSIGQLL 463



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>ERG11_ARATH (O65404) Squalene monooxygenase 1,1 (EC 1.14.99.7) (Squalene|
           epoxidase 1,1) (SE 1,1)
          Length = 516

 Score = 57.8 bits (138), Expect = 8e-09
 Identities = 24/49 (48%), Positives = 35/49 (71%)
 Frame = -1

Query: 148 MRQACFDYLSLXGVCSNGPIALLSGLNPRPLSLVAHFFAVAIFGVGRLM 2
           MRQ C+DYLS  G  ++G +ALL G+NPRP+SL+ H  A+ +  +G L+
Sbjct: 414 MRQGCYDYLSSGGFRTSGMMALLGGMNPRPISLIYHLCAITLSSIGHLL 462



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>ERG1_MOUSE (P52019) Squalene monooxygenase (EC 1.14.99.7) (Squalene epoxidase)|
           (SE)
          Length = 572

 Score = 55.1 bits (131), Expect = 5e-08
 Identities = 24/43 (55%), Positives = 31/43 (72%)
 Frame = -1

Query: 148 MRQACFDYLSLXGVCSNGPIALLSGLNPRPLSLVAHFFAVAIF 20
           +R+ACF Y  L G C  GP+ LLS L+P PL L+ HFF+VAI+
Sbjct: 485 LRKACFLYFKLGGECVTGPVGLLSILSPHPLVLIRHFFSVAIY 527



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>ERG1_RAT (P52020) Squalene monooxygenase (EC 1.14.99.7) (Squalene epoxidase)|
           (SE)
          Length = 573

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 23/43 (53%), Positives = 31/43 (72%)
 Frame = -1

Query: 148 MRQACFDYLSLXGVCSNGPIALLSGLNPRPLSLVAHFFAVAIF 20
           +R+ACF Y  L G C  GP+ LLS L+P PL L+ HFF+VA++
Sbjct: 486 LRKACFLYFKLGGECLTGPVGLLSILSPDPLLLIRHFFSVAVY 528



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>ERG12_ARATH (O65402) Squalene monooxygenase 1,2 (EC 1.14.99.7) (Squalene|
           epoxidase 1,2) (SE 1,2)
          Length = 517

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 24/49 (48%), Positives = 34/49 (69%)
 Frame = -1

Query: 148 MRQACFDYLSLXGVCSNGPIALLSGLNPRPLSLVAHFFAVAIFGVGRLM 2
           MRQ  +DYL   G  ++G +ALL G+NPRPLSLV H  A+ +  +G+L+
Sbjct: 415 MRQGVYDYLCSGGFRTSGMMALLGGMNPRPLSLVYHLCAITLSSIGQLL 463



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>ERG1_CANAL (Q92206) Squalene monooxygenase (EC 1.14.99.7) (Squalene epoxidase)|
           (SE)
          Length = 496

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 23/45 (51%), Positives = 28/45 (62%)
 Frame = -1

Query: 148 MRQACFDYLSLXGVCSNGPIALLSGLNPRPLSLVAHFFAVAIFGV 14
           +R  CF Y    G C NGPI LLSG+ P P+ L  HFF+VA + V
Sbjct: 412 LRNGCFKYFQRGGECVNGPIGLLSGMLPFPMLLFNHFFSVAFYSV 456



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>ERG1_SCHPO (Q9C1W3) Probable squalene monooxygenase (EC 1.14.99.7) (Squalene|
           epoxidase) (SE)
          Length = 457

 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 19/45 (42%), Positives = 26/45 (57%)
 Frame = -1

Query: 148 MRQACFDYLSLXGVCSNGPIALLSGLNPRPLSLVAHFFAVAIFGV 14
           +   C DY    G C  GPI LL GL+  P  L+ HF+AV ++G+
Sbjct: 373 LESGCIDYFKRGGNCVEGPIRLLGGLDHSPSHLIGHFYAVCLYGI 417



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>ERG13_ARATH (O65403) Squalene monooxygenase 2 (EC 1.14.99.7) (Squalene|
           epoxidase 2) (SE 2)
          Length = 516

 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 20/49 (40%), Positives = 31/49 (63%)
 Frame = -1

Query: 148 MRQACFDYLSLXGVCSNGPIALLSGLNPRPLSLVAHFFAVAIFGVGRLM 2
           MRQ CF+YL+     + G + +L G+NP PL+LV H  A+ +  +G L+
Sbjct: 414 MRQGCFNYLARGDFKTRGLMTILGGMNPHPLTLVLHLVAITLTSMGHLL 462



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>ERG1_YEAST (P32476) Squalene monooxygenase (EC 1.14.99.7) (Squalene epoxidase)|
           (SE)
          Length = 496

 Score = 45.1 bits (105), Expect = 5e-05
 Identities = 19/45 (42%), Positives = 27/45 (60%)
 Frame = -1

Query: 148 MRQACFDYLSLXGVCSNGPIALLSGLNPRPLSLVAHFFAVAIFGV 14
           +++ CF Y    G C N P+  LSG+ P+PL L   FFAVA + +
Sbjct: 412 LQKGCFKYFQRGGDCVNKPVEFLSGVLPKPLQLTRVFFAVAFYTI 456



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>ERG1_CANGA (O13306) Squalene monooxygenase (EC 1.14.99.7) (Squalene epoxidase)|
           (SE)
          Length = 489

 Score = 44.3 bits (103), Expect = 9e-05
 Identities = 19/45 (42%), Positives = 28/45 (62%)
 Frame = -1

Query: 148 MRQACFDYLSLXGVCSNGPIALLSGLNPRPLSLVAHFFAVAIFGV 14
           +++ CF Y    G C N P+A L+G+ P+PL L   FFAVA + +
Sbjct: 405 LQKGCFKYFQRGGDCVNLPVAFLAGVLPKPLLLTRVFFAVAFYTI 449



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>ERG1_ASHGO (Q75F69) Squalene monooxygenase (EC 1.14.99.7) (Squalene epoxidase)|
           (SE)
          Length = 497

 Score = 35.8 bits (81), Expect = 0.033
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -1

Query: 148 MRQACFDYLSLXGVCSNGPIALLSGLNPRPLSLVAHFFAVAIFGV 14
           +++ CF+YL         PI+ LSG+ P P  L   FF VA++ V
Sbjct: 413 LQKGCFEYLGRGEDWVRQPISFLSGVLPSPYLLTKVFFTVALYSV 457


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,778,009
Number of Sequences: 219361
Number of extensions: 248117
Number of successful extensions: 694
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 80,573,946
effective HSP length: 24
effective length of database: 75,309,282
effective search space used: 1807422768
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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