ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags16h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|L27349.1|BLYCRH2A Hordeum vulgare calreticulin (CRH2) mRNA, p... 88 3e-15
2gb|L27348.1|BLYCRH1A Hordeum vulgare calreticulin (CRH1) mRNA, p... 88 3e-15
3gb|AC010063.7| Drosophila melanogaster 3L BAC RP98-16A3 (Roswell... 40 0.61
4gb|AE003473.3| Drosophila melanogaster chromosome 3L, section 7 ... 40 0.61
5gb|AF253470.1| Danio rerio myogenic regulatory factor myf5 (MYF5... 38 2.4
6emb|AJ308546.1|FRU308546 Fugu rubripes mrf4 gene for myogenic re... 38 2.4
7emb|BX537156.5| Zebrafish DNA sequence from clone CH211-91G3 in ... 38 2.4
8gb|AC087833.3| Papio anubis clone RP41-78F4, complete sequence 36 9.5
9gb|AC107053.5| Homo sapiens BAC clone RP11-398H1 from 4, complet... 36 9.5
10dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 36 9.5
11dbj|AP005885.3| Oryza sativa (japonica cultivar-group) genomic D... 36 9.5
12gb|AY260760.3| Streptomyces hygroscopicus subsp. yingchengensis ... 36 9.5
13dbj|AP003353.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 36 9.5

>gb|L27349.1|BLYCRH2A Hordeum vulgare calreticulin (CRH2) mRNA, partial cds
          Length = 1450

 Score = 87.7 bits (44), Expect = 3e-15
 Identities = 59/64 (92%), Gaps = 1/64 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    ggggaacatcactaangagagacaactnataaatcctggcagcagcgcaaaggcanaggc 60
            ||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 1330 ggggaacatca-taatgagagacaactaataaatcctggcagcagcgcaaaggcaaaggc 1272

                
Query: 61   ngcc 64
             |||
Sbjct: 1271 agcc 1268



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>gb|L27348.1|BLYCRH1A Hordeum vulgare calreticulin (CRH1) mRNA, partial cds
          Length = 1472

 Score = 87.7 bits (44), Expect = 3e-15
 Identities = 59/64 (92%), Gaps = 1/64 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    ggggaacatcactaangagagacaactnataaatcctggcagcagcgcaaaggcanaggc 60
            ||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 1322 ggggaacatca-taatgagagacaactaataaatcctggcagcagcgcaaaggcaaaggc 1264

                
Query: 61   ngcc 64
             |||
Sbjct: 1263 agcc 1260



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>gb|AC010063.7| Drosophila melanogaster 3L BAC RP98-16A3 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 194006

 Score = 40.1 bits (20), Expect = 0.61
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    ctggcagcagcgcaaaggca 55
             ||||||||||||||||||||
Sbjct: 63820 ctggcagcagcgcaaaggca 63839



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>gb|AE003473.3| Drosophila melanogaster chromosome 3L, section 7 of 83 of the complete
              sequence
          Length = 315108

 Score = 40.1 bits (20), Expect = 0.61
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 36     ctggcagcagcgcaaaggca 55
              ||||||||||||||||||||
Sbjct: 168075 ctggcagcagcgcaaaggca 168056



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>gb|AF253470.1| Danio rerio myogenic regulatory factor myf5 (MYF5) gene, complete cds
          Length = 3831

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 31   aaatcctggcagcagcgca 49
            |||||||||||||||||||
Sbjct: 2322 aaatcctggcagcagcgca 2304



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>emb|AJ308546.1|FRU308546 Fugu rubripes mrf4 gene for myogenic regulatory factor 4 and myf5
            gene for myogenic regulatory factor 5
          Length = 10681

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 31   aaatcctggcagcagcgca 49
            |||||||||||||||||||
Sbjct: 7035 aaatcctggcagcagcgca 7017



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>emb|BX537156.5| Zebrafish DNA sequence from clone CH211-91G3 in linkage group 4,
             complete sequence
          Length = 117987

 Score = 38.2 bits (19), Expect = 2.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 31    aaatcctggcagcagcgca 49
             |||||||||||||||||||
Sbjct: 53985 aaatcctggcagcagcgca 54003



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>gb|AC087833.3| Papio anubis clone RP41-78F4, complete sequence
          Length = 154295

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 38    ggcagcagcgcaaaggca 55
             ||||||||||||||||||
Sbjct: 94501 ggcagcagcgcaaaggca 94484



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>gb|AC107053.5| Homo sapiens BAC clone RP11-398H1 from 4, complete sequence
          Length = 57057

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                  
Query: 5     aacatcactaangagagacaa 25
             ||||||||||| |||||||||
Sbjct: 25974 aacatcactaatgagagacaa 25994



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                  
Query: 38       ggcagcagcgcaaaggca 55
                ||||||||||||||||||
Sbjct: 27498712 ggcagcagcgcaaaggca 27498729



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>dbj|AP005885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0657H12
          Length = 142688

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 38    ggcagcagcgcaaaggca 55
             ||||||||||||||||||
Sbjct: 90434 ggcagcagcgcaaaggca 90451



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>gb|AY260760.3| Streptomyces hygroscopicus subsp. yingchengensis Shy1 (shy1), CvhE
             (cvhE), CvhD (cvhD), CvhC (cvhC), CvhB (cvhB), CvhA
             (cvhA), Shy26 (shy26), Shy4 (shy4), Shy5 (shy5), Shy6
             (shy6), Shy7 (shy7), Shy8 (shy8), Shy9 (shy9), Shy10
             (shy10), Shy11 (shy11), Shy12 (shy12), Shy13 (shy13),
             Shy14 (shy14), Shy15 (shy15), Shy16 (shy16), Shy17
             (shy17), Shy18 (shy18), Hmr19 (hmr19), Shy20 (shy20),
             Shy21 (shy21), Shy22 (shy22), Shy23 (shy23), Shy24
             (shy24), and Shy25 (shy25) genes, complete cds
          Length = 36687

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 37    tggcagcagcgcaaaggc 54
             ||||||||||||||||||
Sbjct: 34684 tggcagcagcgcaaaggc 34701



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>dbj|AP003353.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1491A8
          Length = 159490

 Score = 36.2 bits (18), Expect = 9.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 29     ataaatcctggcagcagc 46
              ||||||||||||||||||
Sbjct: 133121 ataaatcctggcagcagc 133104


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 257,653
Number of Sequences: 3902068
Number of extensions: 257653
Number of successful extensions: 11598
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11578
Number of HSP's gapped (non-prelim): 20
length of query: 64
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 43
effective length of database: 17,151,101,840
effective search space: 737497379120
effective search space used: 737497379120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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