| Clone Name | rbags16h09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|L27349.1|BLYCRH2A Hordeum vulgare calreticulin (CRH2) mRNA, partial cds Length = 1450 Score = 87.7 bits (44), Expect = 3e-15 Identities = 59/64 (92%), Gaps = 1/64 (1%) Strand = Plus / Minus Query: 1 ggggaacatcactaangagagacaactnataaatcctggcagcagcgcaaaggcanaggc 60 ||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||| |||| Sbjct: 1330 ggggaacatca-taatgagagacaactaataaatcctggcagcagcgcaaaggcaaaggc 1272 Query: 61 ngcc 64 ||| Sbjct: 1271 agcc 1268
>gb|L27348.1|BLYCRH1A Hordeum vulgare calreticulin (CRH1) mRNA, partial cds Length = 1472 Score = 87.7 bits (44), Expect = 3e-15 Identities = 59/64 (92%), Gaps = 1/64 (1%) Strand = Plus / Minus Query: 1 ggggaacatcactaangagagacaactnataaatcctggcagcagcgcaaaggcanaggc 60 ||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||| |||| Sbjct: 1322 ggggaacatca-taatgagagacaactaataaatcctggcagcagcgcaaaggcaaaggc 1264 Query: 61 ngcc 64 ||| Sbjct: 1263 agcc 1260
>gb|AC010063.7| Drosophila melanogaster 3L BAC RP98-16A3 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 194006 Score = 40.1 bits (20), Expect = 0.61 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 ctggcagcagcgcaaaggca 55 |||||||||||||||||||| Sbjct: 63820 ctggcagcagcgcaaaggca 63839
>gb|AE003473.3| Drosophila melanogaster chromosome 3L, section 7 of 83 of the complete sequence Length = 315108 Score = 40.1 bits (20), Expect = 0.61 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 ctggcagcagcgcaaaggca 55 |||||||||||||||||||| Sbjct: 168075 ctggcagcagcgcaaaggca 168056
>gb|AF253470.1| Danio rerio myogenic regulatory factor myf5 (MYF5) gene, complete cds Length = 3831 Score = 38.2 bits (19), Expect = 2.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 aaatcctggcagcagcgca 49 ||||||||||||||||||| Sbjct: 2322 aaatcctggcagcagcgca 2304
>emb|AJ308546.1|FRU308546 Fugu rubripes mrf4 gene for myogenic regulatory factor 4 and myf5 gene for myogenic regulatory factor 5 Length = 10681 Score = 38.2 bits (19), Expect = 2.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 aaatcctggcagcagcgca 49 ||||||||||||||||||| Sbjct: 7035 aaatcctggcagcagcgca 7017
>emb|BX537156.5| Zebrafish DNA sequence from clone CH211-91G3 in linkage group 4, complete sequence Length = 117987 Score = 38.2 bits (19), Expect = 2.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 aaatcctggcagcagcgca 49 ||||||||||||||||||| Sbjct: 53985 aaatcctggcagcagcgca 54003
>gb|AC087833.3| Papio anubis clone RP41-78F4, complete sequence Length = 154295 Score = 36.2 bits (18), Expect = 9.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 38 ggcagcagcgcaaaggca 55 |||||||||||||||||| Sbjct: 94501 ggcagcagcgcaaaggca 94484
>gb|AC107053.5| Homo sapiens BAC clone RP11-398H1 from 4, complete sequence Length = 57057 Score = 36.2 bits (18), Expect = 9.5 Identities = 20/21 (95%) Strand = Plus / Plus Query: 5 aacatcactaangagagacaa 25 ||||||||||| ||||||||| Sbjct: 25974 aacatcactaatgagagacaa 25994
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 36.2 bits (18), Expect = 9.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 38 ggcagcagcgcaaaggca 55 |||||||||||||||||| Sbjct: 27498712 ggcagcagcgcaaaggca 27498729
>dbj|AP005885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0657H12 Length = 142688 Score = 36.2 bits (18), Expect = 9.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 38 ggcagcagcgcaaaggca 55 |||||||||||||||||| Sbjct: 90434 ggcagcagcgcaaaggca 90451
>gb|AY260760.3| Streptomyces hygroscopicus subsp. yingchengensis Shy1 (shy1), CvhE (cvhE), CvhD (cvhD), CvhC (cvhC), CvhB (cvhB), CvhA (cvhA), Shy26 (shy26), Shy4 (shy4), Shy5 (shy5), Shy6 (shy6), Shy7 (shy7), Shy8 (shy8), Shy9 (shy9), Shy10 (shy10), Shy11 (shy11), Shy12 (shy12), Shy13 (shy13), Shy14 (shy14), Shy15 (shy15), Shy16 (shy16), Shy17 (shy17), Shy18 (shy18), Hmr19 (hmr19), Shy20 (shy20), Shy21 (shy21), Shy22 (shy22), Shy23 (shy23), Shy24 (shy24), and Shy25 (shy25) genes, complete cds Length = 36687 Score = 36.2 bits (18), Expect = 9.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 37 tggcagcagcgcaaaggc 54 |||||||||||||||||| Sbjct: 34684 tggcagcagcgcaaaggc 34701
>dbj|AP003353.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1491A8 Length = 159490 Score = 36.2 bits (18), Expect = 9.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 29 ataaatcctggcagcagc 46 |||||||||||||||||| Sbjct: 133121 ataaatcctggcagcagc 133104 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 257,653 Number of Sequences: 3902068 Number of extensions: 257653 Number of successful extensions: 11598 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11578 Number of HSP's gapped (non-prelim): 20 length of query: 64 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 43 effective length of database: 17,151,101,840 effective search space: 737497379120 effective search space used: 737497379120 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)