ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags16h04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470389.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.006
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 50 0.006
3gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genom... 50 0.006
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
5dbj|AK108050.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.006
6dbj|AK103825.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.006
7dbj|AK059168.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.006
8ref|NM_188451.1| Oryza sativa (japonica cultivar-group), Ozsa814... 46 0.086
9dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.086
10dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.086
11dbj|AK104443.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.086
12dbj|AK058429.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.086
13ref|NM_188455.1| Oryza sativa (japonica cultivar-group), Ozsa815... 44 0.34
14ref|XM_476139.1| Oryza sativa (japonica cultivar-group), predic... 44 0.34
15ref|NM_192370.1| Oryza sativa (japonica cultivar-group), predic... 44 0.34
16gb|AC104705.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.34
17dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.34
18dbj|AP003792.4| Oryza sativa (japonica cultivar-group) genomic D... 44 0.34
19ref|NM_188456.1| Oryza sativa (japonica cultivar-group), Ozsa815... 42 1.3
20gb|BT017832.1| Zea mays clone EL01N0509A10.c mRNA sequence 42 1.3
21gb|AC163631.5| Mus musculus BAC clone RP23-147B15 from chromosom... 42 1.3
22ref|XM_984204.1| PREDICTED: Mus musculus plexin A4, transcript v... 42 1.3
23gb|AC124537.5| Mus musculus BAC clone RP23-333J6 from chromosome... 42 1.3
24gb|BT008971.1| Triticum aestivum clone wdk1c.pk023.m3:fis, full ... 42 1.3
25dbj|AK220402.1| Mus musculus mRNA for mKIAA1550 protein 42 1.3
26gb|AC113395.2| Homo sapiens chromosome 5 clone RP11-418P19, comp... 42 1.3
27dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
28dbj|AP004794.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
29dbj|AP004749.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
30gb|AC153629.3| Mus musculus 6 BAC RP23-462O13 (Roswell Park Canc... 42 1.3
31dbj|AK067909.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
32dbj|AK061422.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
33gb|AY107619.1| Zea mays PCO073125 mRNA sequence 42 1.3
34gb|AY104167.1| Zea mays PCO062696 mRNA sequence 42 1.3
35ref|NM_188447.1| Oryza sativa (japonica cultivar-group), Ozsa814... 40 5.3
36gb|AC164399.4| Mus musculus chromosome 8, clone RP23-338K3, comp... 40 5.3
37gb|AC140981.3| Mus musculus chromosome 9 clone RP23-282G22, comp... 40 5.3
38gb|AC099690.8| Mus musculus chromosome 8, clone RP23-73E9, compl... 40 5.3
39gb|BT009193.1| Triticum aestivum clone wle1.pk0001.d6:fis, full ... 40 5.3
40dbj|AK119642.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.3
41dbj|AK119598.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.3
42dbj|AK061118.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.3
43dbj|AK059088.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.3
44gb|AC109510.7| Mus musculus chromosome 8, clone RP23-23D6, compl... 40 5.3
45emb|AL450397.19| Mouse DNA sequence from clone RP23-100G16 on ch... 40 5.3 
>ref|XM_470389.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1425

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 346  ctccgtcatgtggatgccgtcccagttga 374
            |||||||||||||| ||||||||||||||
Sbjct: 1058 ctccgtcatgtggacgccgtcccagttga 1030
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                             
Query: 346      ctccgtcatgtggatgccgtcccagttga 374
                |||||||||||||| ||||||||||||||
Sbjct: 35200023 ctccgtcatgtggacgccgtcccagttga 35200051
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>gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genomic sequence, complete
             sequence
          Length = 156606

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 346   ctccgtcatgtggatgccgtcccagttga 374
             |||||||||||||| ||||||||||||||
Sbjct: 78784 ctccgtcatgtggacgccgtcccagttga 78812
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                             
Query: 346      ctccgtcatgtggatgccgtcccagttga 374
                |||||||||||||| ||||||||||||||
Sbjct: 35290095 ctccgtcatgtggacgccgtcccagttga 35290123
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>dbj|AK108050.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-G04, full
           insert sequence
          Length = 1371

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 346 ctccgtcatgtggatgccgtcccagttga 374
           |||||||||||||| ||||||||||||||
Sbjct: 783 ctccgtcatgtggacgccgtcccagttga 811
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>dbj|AK103825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033147L02, full
           insert sequence
          Length = 586

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 346 ctccgtcatgtggatgccgtcccagttga 374
           |||||||||||||| ||||||||||||||
Sbjct: 350 ctccgtcatgtggacgccgtcccagttga 322
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>dbj|AK059168.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-E06, full
            insert sequence
          Length = 1425

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 346  ctccgtcatgtggatgccgtcccagttga 374
            |||||||||||||| ||||||||||||||
Sbjct: 1058 ctccgtcatgtggacgccgtcccagttga 1030
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>ref|NM_188451.1| Oryza sativa (japonica cultivar-group), Ozsa8146 predicted mRNA
          Length = 1194

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 89/111 (80%)
 Strand = Plus / Minus

                                                                        
Query: 265  agatcgtggcatggccttgagaataggcggttgcgcgtaagggccccagagccaaccggc 324
            ||||||| ||| ||||  ||| || ||||| |||||||| ||||| | |||||| |||||
Sbjct: 1143 agatcgttgcacggccgcgaggatgggcggatgcgcgtacgggccgcggagccagccggc 1084

                                                               
Query: 325  ggcgatgtacatgtatgcagtctccgtcatgtggatgccgtcccagttgat 375
            |||||  |    ||| || | |||||| | |||||||||||||||||||||
Sbjct: 1083 ggcgacctggccgtaggccgcctccgtgaggtggatgccgtcccagttgat 1033
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 89/111 (80%)
 Strand = Plus / Minus

                                                                           
Query: 265     agatcgtggcatggccttgagaataggcggttgcgcgtaagggccccagagccaaccggc 324
               ||||||| ||| ||||  ||| || ||||| |||||||| ||||| | |||||| |||||
Sbjct: 6342968 agatcgttgcacggccgcgaggatgggcggatgcgcgtacgggccgcggagccagccggc 6342909

                                                                  
Query: 325     ggcgatgtacatgtatgcagtctccgtcatgtggatgccgtcccagttgat 375
               |||||  |    ||| || | |||||| | |||||||||||||||||||||
Sbjct: 6342908 ggcgacctggccgtaggccgcctccgtgaggtggatgccgtcccagttgat 6342858



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 345      tctccgtcatgtggatgccgtcccag 370
                ||||||||||||||| ||||||||||
Sbjct: 26281100 tctccgtcatgtggacgccgtcccag 26281075



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 346     ctccgtcatgtggatgccgtcccagttgat 375
               |||||||| ||||| |||||||||||||||
Sbjct: 6362376 ctccgtcaggtggacgccgtcccagttgat 6362347



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                            
Query: 287     ataggcggttgcgcgtaagggccccagagccaaccggcggcgatg 331
               |||||||| |||||||| ||||| |  ||||| ||||||||||||
Sbjct: 6366035 ataggcggatgcgcgtacgggccgcgcagccagccggcggcgatg 6365991



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 346     ctccgtcatgtggatgccgtcccagttg 373
               |||||||| ||||| |||||||||||||
Sbjct: 6320998 ctccgtcaggtggacgccgtcccagttg 6320971
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>dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0515G01
          Length = 175072

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 89/111 (80%)
 Strand = Plus / Minus

                                                                          
Query: 265    agatcgtggcatggccttgagaataggcggttgcgcgtaagggccccagagccaaccggc 324
              ||||||| ||| ||||  ||| || ||||| |||||||| ||||| | |||||| |||||
Sbjct: 114034 agatcgttgcacggccgcgaggatgggcggatgcgcgtacgggccgcggagccagccggc 113975

                                                                 
Query: 325    ggcgatgtacatgtatgcagtctccgtcatgtggatgccgtcccagttgat 375
              |||||  |    ||| || | |||||| | |||||||||||||||||||||
Sbjct: 113974 ggcgacctggccgtaggccgcctccgtgaggtggatgccgtcccagttgat 113924



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 346    ctccgtcatgtggatgccgtcccagttgat 375
              |||||||| ||||| |||||||||||||||
Sbjct: 133442 ctccgtcaggtggacgccgtcccagttgat 133413



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                           
Query: 287    ataggcggttgcgcgtaagggccccagagccaaccggcggcgatg 331
              |||||||| |||||||| ||||| |  ||||| ||||||||||||
Sbjct: 137101 ataggcggatgcgcgtacgggccgcgcagccagccggcggcgatg 137057



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 346   ctccgtcatgtggatgccgtcccagttg 373
             |||||||| ||||| |||||||||||||
Sbjct: 92064 ctccgtcaggtggacgccgtcccagttg 92037
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>dbj|AK104443.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-G04, full
            insert sequence
          Length = 1526

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 89/111 (80%)
 Strand = Plus / Minus

                                                                        
Query: 265  agatcgtggcatggccttgagaataggcggttgcgcgtaagggccccagagccaaccggc 324
            ||||||| ||| ||||  ||| || ||||| |||||||| ||||| | |||||| |||||
Sbjct: 1213 agatcgttgcacggccgcgaggatgggcggatgcgcgtacgggccgcggagccagccggc 1154

                                                               
Query: 325  ggcgatgtacatgtatgcagtctccgtcatgtggatgccgtcccagttgat 375
            |||||  |    ||| || | |||||| | |||||||||||||||||||||
Sbjct: 1153 ggcgacctggccgtaggccgcctccgtgaggtggatgccgtcccagttgat 1103
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>dbj|AK058429.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-E09, full
            insert sequence
          Length = 1531

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 89/111 (80%)
 Strand = Plus / Minus

                                                                        
Query: 265  agatcgtggcatggccttgagaataggcggttgcgcgtaagggccccagagccaaccggc 324
            ||||||| ||| ||||  ||| || ||||| |||||||| ||||| | |||||| |||||
Sbjct: 1213 agatcgttgcacggccgcgaggatgggcggatgcgcgtacgggccgcggagccagccggc 1154

                                                               
Query: 325  ggcgatgtacatgtatgcagtctccgtcatgtggatgccgtcccagttgat 375
            |||||  |    ||| || | |||||| | |||||||||||||||||||||
Sbjct: 1153 ggcgacctggccgtaggccgcctccgtgaggtggatgccgtcccagttgat 1103
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>ref|NM_188455.1| Oryza sativa (japonica cultivar-group), Ozsa8150 predicted mRNA
          Length = 1149

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 346  ctccgtcatgtggatgccgtcccagttgat 375
            |||||||| ||||| |||||||||||||||
Sbjct: 1068 ctccgtcaggtggacgccgtcccagttgat 1039
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>ref|XM_476139.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1143

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                        
Query: 313  gagccaaccggcggcgatgtacatgtatgcagtctccgtcatgtggatgccgtcccagtt 372
            |||||| ||| |||||| |||| ||||||| | ||| || |  |||||||||||||||||
Sbjct: 1095 gagccagccgccggcgacgtacttgtatgcggcctcggtgagatggatgccgtcccagtt 1036

              
Query: 373  ga 374
            ||
Sbjct: 1035 ga 1034
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>ref|NM_192370.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1143

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 345  tctccgtcatgtggatgccgtcccag 370
            ||||||||||||||| ||||||||||
Sbjct: 1075 tctccgtcatgtggacgccgtcccag 1050
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>gb|AC104705.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1008_D08,
             complete sequence
          Length = 94286

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                         
Query: 313   gagccaaccggcggcgatgtacatgtatgcagtctccgtcatgtggatgccgtcccagtt 372
             |||||| ||| |||||| |||| ||||||| | ||| || |  |||||||||||||||||
Sbjct: 61879 gagccagccgccggcgacgtacttgtatgcggcctcggtgagatggatgccgtcccagtt 61820

               
Query: 373   ga 374
             ||
Sbjct: 61819 ga 61818
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                           
Query: 313     gagccaaccggcggcgatgtacatgtatgcagtctccgtcatgtggatgccgtcccagtt 372
               |||||| ||| |||||| |||| ||||||| | ||| || |  |||||||||||||||||
Sbjct: 6757618 gagccagccgccggcgacgtacttgtatgcggcctcggtgagatggatgccgtcccagtt 6757559

                 
Query: 373     ga 374
               ||
Sbjct: 6757558 ga 6757557
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>dbj|AP003792.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1159_D09
          Length = 147770

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 345   tctccgtcatgtggatgccgtcccag 370
             ||||||||||||||| ||||||||||
Sbjct: 93781 tctccgtcatgtggacgccgtcccag 93756
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>ref|NM_188456.1| Oryza sativa (japonica cultivar-group), Ozsa8151 predicted mRNA
          Length = 1137

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 287  ataggcggttgcgcgtaagggccccagagccaaccggcggcgatg 331
            |||||||| |||||||| ||||| |  ||||| ||||||||||||
Sbjct: 1115 ataggcggatgcgcgtacgggccgcgcagccagccggcggcgatg 1071
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>gb|BT017832.1| Zea mays clone EL01N0509A10.c mRNA sequence
          Length = 1420

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 350  gtcatgtggatgccgtcccag 370
            |||||||||||||||||||||
Sbjct: 1163 gtcatgtggatgccgtcccag 1143
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>gb|AC163631.5| Mus musculus BAC clone RP23-147B15 from chromosome 13, complete sequence
          Length = 211368

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 133    tggagaatgaaggttgctgccgcag 157
              |||||||| ||||||||||||||||
Sbjct: 174782 tggagaataaaggttgctgccgcag 174806
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>ref|XM_984204.1| PREDICTED: Mus musculus plexin A4, transcript variant 2 (Plxna4),
            mRNA
          Length = 11898

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 121  gcatgcaatgcatggagaatgaagg 145
            |||||| ||||||||||||||||||
Sbjct: 7362 gcatgctatgcatggagaatgaagg 7338
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>gb|AC124537.5| Mus musculus BAC clone RP23-333J6 from chromosome 13, complete sequence
          Length = 186870

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 133   tggagaatgaaggttgctgccgcag 157
             |||||||| ||||||||||||||||
Sbjct: 76227 tggagaataaaggttgctgccgcag 76251
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>gb|BT008971.1| Triticum aestivum clone wdk1c.pk023.m3:fis, full insert mRNA sequence
          Length = 1472

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 350  gtcatgtggatgccgtcccag 370
            |||||||||||||||||||||
Sbjct: 1100 gtcatgtggatgccgtcccag 1080
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>dbj|AK220402.1| Mus musculus mRNA for mKIAA1550 protein
          Length = 5162

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 121  gcatgcaatgcatggagaatgaagg 145
            |||||| ||||||||||||||||||
Sbjct: 2281 gcatgctatgcatggagaatgaagg 2257
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>gb|AC113395.2| Homo sapiens chromosome 5 clone RP11-418P19, complete sequence
          Length = 195369

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 130   gcatggagaatgaaggttgct 150
             |||||||||||||||||||||
Sbjct: 29288 gcatggagaatgaaggttgct 29308
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 350      gtcatgtggatgccgtcccag 370
                |||||||||||||||||||||
Sbjct: 19518652 gtcatgtggatgccgtcccag 19518672
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>dbj|AP004794.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
           PAC clone:P0506C10
          Length = 150549

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 350 gtcatgtggatgccgtcccag 370
           |||||||||||||||||||||
Sbjct: 384 gtcatgtggatgccgtcccag 404
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>dbj|AP004749.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0410C01
          Length = 138424

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 350    gtcatgtggatgccgtcccag 370
              |||||||||||||||||||||
Sbjct: 137061 gtcatgtggatgccgtcccag 137081
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>gb|AC153629.3| Mus musculus 6 BAC RP23-462O13 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 177194

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 121   gcatgcaatgcatggagaatgaagg 145
             |||||| ||||||||||||||||||
Sbjct: 16577 gcatgctatgcatggagaatgaagg 16601
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>dbj|AK067909.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123P18, full
            insert sequence
          Length = 1580

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 350  gtcatgtggatgccgtcccag 370
            |||||||||||||||||||||
Sbjct: 1179 gtcatgtggatgccgtcccag 1159
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>dbj|AK061422.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-F12, full
            insert sequence
          Length = 1323

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 350  gtcatgtggatgccgtcccag 370
            |||||||||||||||||||||
Sbjct: 1175 gtcatgtggatgccgtcccag 1155
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>gb|AY107619.1| Zea mays PCO073125 mRNA sequence
          Length = 617

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 350 gtcatgtggatgccgtcccag 370
           |||||||||||||||||||||
Sbjct: 251 gtcatgtggatgccgtcccag 231
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>gb|AY104167.1| Zea mays PCO062696 mRNA sequence
          Length = 1460

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 346  ctccgtcatgtggatgccgtcccag 370
            |||||||| ||||||||||||||||
Sbjct: 1090 ctccgtcaggtggatgccgtcccag 1066
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>ref|NM_188447.1| Oryza sativa (japonica cultivar-group), Ozsa8142 predicted mRNA
          Length = 1125

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 346  ctccgtcatgtggatgccgtcccagttg 373
            |||||||| ||||| |||||||||||||
Sbjct: 1059 ctccgtcaggtggacgccgtcccagttg 1032
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>gb|AC164399.4| Mus musculus chromosome 8, clone RP23-338K3, complete sequence
          Length = 213363

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 249    gtgtcttgagatccatagat 268
              ||||||||||||||||||||
Sbjct: 148621 gtgtcttgagatccatagat 148602
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>gb|AC140981.3| Mus musculus chromosome 9 clone RP23-282G22, complete sequence
          Length = 174329

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    atgcaacagaattattacat 76
             ||||||||||||||||||||
Sbjct: 41917 atgcaacagaattattacat 41898
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>gb|AC099690.8| Mus musculus chromosome 8, clone RP23-73E9, complete sequence
          Length = 225655

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 249    gtgtcttgagatccatagat 268
              ||||||||||||||||||||
Sbjct: 166143 gtgtcttgagatccatagat 166162
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>gb|BT009193.1| Triticum aestivum clone wle1.pk0001.d6:fis, full insert mRNA sequence
          Length = 1342

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 346  ctccgtcatgtggatgccgtcccagttg 373
            |||||||| ||||| |||||||||||||
Sbjct: 1139 ctccgtcaggtggacgccgtcccagttg 1112
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>dbj|AK119642.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-F10, full
            insert sequence
          Length = 1452

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 346  ctccgtcatgtggatgccgtcccagttg 373
            |||||||| ||||| |||||||||||||
Sbjct: 1122 ctccgtcaggtggacgccgtcccagttg 1095
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>dbj|AK119598.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-E01, full
            insert sequence
          Length = 1520

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 346  ctccgtcatgtggatgccgtcccagttg 373
            |||||||| ||||| |||||||||||||
Sbjct: 1119 ctccgtcaggtggacgccgtcccagttg 1092
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>dbj|AK061118.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-F05, full
            insert sequence
          Length = 1577

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 346  ctccgtcatgtggatgccgtcccagttg 373
            |||||||| ||||| |||||||||||||
Sbjct: 1122 ctccgtcaggtggacgccgtcccagttg 1095
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>dbj|AK059088.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-B07, full
            insert sequence
          Length = 1691

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 346  ctccgtcatgtggatgccgtcccagttg 373
            |||||||| ||||| |||||||||||||
Sbjct: 1382 ctccgtcaggtggacgccgtcccagttg 1355
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>gb|AC109510.7| Mus musculus chromosome 8, clone RP23-23D6, complete sequence
          Length = 185866

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 249   gtgtcttgagatccatagat 268
             ||||||||||||||||||||
Sbjct: 60526 gtgtcttgagatccatagat 60507
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>emb|AL450397.19| Mouse DNA sequence from clone RP23-100G16 on chromosome X, complete
             sequence
          Length = 228645

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   aatgcatggagaatgaaggt 146
             ||||||||||||||||||||
Sbjct: 69095 aatgcatggagaatgaaggt 69114


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,660,276
Number of Sequences: 3902068
Number of extensions: 2660276
Number of successful extensions: 48152
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48009
Number of HSP's gapped (non-prelim): 143
length of query: 398
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 376
effective length of database: 17,147,199,772
effective search space: 6447347114272
effective search space used: 6447347114272
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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