>DHX57_MOUSE (Q6P5D3) Putative ATP-dependent RNA helicase DHX57 (EC 3.6.1.-) (DEAH|
            box protein 57)
          Length = 1388

 Score = 63.2 bits (152), Expect = 7e-10
 Identities = 35/77 (45%), Positives = 50/77 (64%), Gaps = 5/77 (6%)
 Frame = -2

Query: 671  ETSKVFLRDTSVISPYSLXLFGGSMV-IQHQAGVVII---DGWLRLTAAA-QTAVLFKQL 507
            +TS+VF+RD S++S Y L LFGG  V +Q Q G  ++   DGW+R  AA+ Q A L K+L
Sbjct: 1290 KTSRVFIRDCSMVSVYPLVLFGGGQVNVQLQRGAFVVSLDDGWIRFVAASHQVAELVKEL 1349

Query: 506  RITLDAVLKELTRKPEM 456
            R  LD +L++  + P M
Sbjct: 1350 RCELDQLLQDKIKNPSM 1366

>DHX57_HUMAN (Q6P158) Putative ATP-dependent RNA helicase DHX57 (EC 3.6.1.-) (DEAH|
            box protein 57)
          Length = 1386

 Score = 60.8 bits (146), Expect = 4e-09
 Identities = 34/77 (44%), Positives = 50/77 (64%), Gaps = 5/77 (6%)
 Frame = -2

Query: 671  ETSKVFLRDTSVISPYSLXLFGGSMV-IQHQAGVVII---DGWLRLTAAA-QTAVLFKQL 507
            +TS+VF+RD S++S Y L LFGG  V +Q Q G  ++   DGW+R  AA+ Q A L K+L
Sbjct: 1288 KTSRVFIRDCSMVSVYPLVLFGGGQVNVQLQRGEFVVSLDDGWIRFVAASHQVAELVKEL 1347

Query: 506  RITLDAVLKELTRKPEM 456
            R  LD +L++  + P +
Sbjct: 1348 RCELDQLLQDKIKNPSI 1364

>DHX9_XENLA (Q68FK8) ATP-dependent RNA helicase A-like protein (EC 3.6.1.-)|
            (Nuclear DNA helicase II) (NDH II) (DEAH box protein 9)
          Length = 1262

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 24/95 (25%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
 Frame = -2

Query: 668  TSKVFLRDTSVISPYSLXLFGGSMVIQHQAGVVIIDGWLRLTAAAQTAVLFKQLRITLDA 489
            T  +  +  +++SP  L LF    V+      + +D W++L+ A + +     LR  L+A
Sbjct: 1053 TRAISAKGMTMVSPLQLLLFASKKVMS-DGEFIHLDDWIKLSMAHEESACITALRAALEA 1111

Query: 488  VLKELTRKPEMATFVD--NEVVRSIIHLLLEEEKA 390
            ++ E+T++PE+ + +D  NE + ++I ++ +   A
Sbjct: 1112 LVVEVTKEPEILSQLDPVNEKMLNMIRVISKPSTA 1146

>Y053_METJA (Q60360) Hypothetical protein MJ0053|
          Length = 227

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 20/55 (36%), Positives = 31/55 (56%)
 Frame = -2

Query: 515 KQLRITLDAVLKELTRKPEMATFVDNEVVRSIIHLLLEEEKAQQA*IVVNELLYR 351
           K++ I    +LKE  +KPEM   VDN      I  L++++K  +A  ++ E LYR
Sbjct: 137 KEILINKFLILKESFKKPEMIEAVDN------IIELIKQDKYYEAAKLIEEKLYR 185

>KDTA_CHLMU (Q9PKI5) 3-deoxy-D-manno-octulosonic-acid transferase (EC 2.-.-.-)|
           (KDO transferase)
          Length = 430

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -2

Query: 491 AVLKELTRKPEMATFVDNEVVRSIIHLLLEEEKAQQA 381
           +VL EL R  E+   VD E +   +  LLE+EK +QA
Sbjct: 362 SVLAELLRTKEVGVSVDKENLLEAVENLLEDEKKRQA 398

>DHX9_CAEEL (Q22307) Probable ATP-dependent RNA helicase A (EC 3.6.1.-) (Nuclear|
            DNA helicase II) (NDH II)
          Length = 1301

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
 Frame = -2

Query: 668  TSKVFLRDTSVISPYSLXLFGGSMVIQHQAGVVIIDGWLRLTAAAQTAVLFKQLRITLDA 489
            T  +  +  SVIS   L +FG   V     G+V ID  + +     TA     LR  ++A
Sbjct: 1066 TRCISCKQMSVISAIQLLVFGSRKVECVGEGLVRIDETITIRMNVSTAAALIGLRPCIEA 1125

Query: 488  VLKELTRKPEMATFVD--NEVVRSIIHLLLEEEKAQQA*IVVNELL 357
            +L +    PE    ++  +  +R ++  +  EE   +A  + + LL
Sbjct: 1126 LLVKSCENPESLAGLNPSDAELRQLLRDISSEEFMSEAGPIKDSLL 1171

>Y322_MYCGE (P47564) Hypothetical protein MG322|
          Length = 558

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
 Frame = -2

Query: 656 FLRDTSVISPYSLXLFGGSMVIQHQAGVVIIDGWLRLTAAAQTAVLFKQLRITLDAVLKE 477
           F    S ++   + L GGS  + ++ G+ II  WL ++      + +  L    +A+ K+
Sbjct: 225 FFHSLSAVNNAGIDLIGGSSFVPYRNGLGIIIQWLTISQIIFGGIGYPCLFDGFEAIKKK 284

Query: 476 LT----RKPEMATFVDNEVVRSIIHLLL 405
           +      K + + F    V+ +I+ +LL
Sbjct: 285 IKYGRHTKHQFSLFTKLTVITNIVVILL 312


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,236,482
Number of Sequences: 219361
Number of extensions: 1790420
Number of successful extensions: 3819
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3809
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6541540170
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)