ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags16g13 |
|---|---|
| Clone Library Name | barley_pub |
>ENV_MLVFR (P03395) Coat protein GP70| Length = 445 Score = 30.8 bits (68), Expect = 1.4 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 4/31 (12%) Frame = -2 Query: 275 PLPNPLPKTAK----TNEVWSLLSGAPTQTR 195 PLPNPLPK AK +N +++S +PT T+ Sbjct: 250 PLPNPLPKPAKSPPVSNSTPTMISPSPTPTQ 280
>RL10_ARCFU (O28930) 50S ribosomal protein L10e| Length = 174 Score = 29.6 bits (65), Expect = 3.1 Identities = 19/55 (34%), Positives = 27/55 (49%) Frame = +1 Query: 172 PGWAILSHLVWVGAPLSRLQTSLVLAVFGKGLGRGANVKRTGSSEESCWIQQSAF 336 P + H + VGA R+ + A FGK +GR A VK G+ S W++ F Sbjct: 89 PHHILREHKMAVGAGADRISQGM-RAAFGKPVGRAARVK-PGTKIMSVWVKPEHF 141
>ENV_MLVFP (P26803) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E; R protein] Length = 676 Score = 29.6 bits (65), Expect = 3.1 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 4/31 (12%) Frame = -2 Query: 275 PLPNPLPKTAK----TNEVWSLLSGAPTQTR 195 PLPNPLPK AK +N +L+S +P T+ Sbjct: 284 PLPNPLPKPAKSPSASNSTPTLISPSPAPTQ 314
>ENV_MLVFF (P26804) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E; R protein] Length = 676 Score = 29.6 bits (65), Expect = 3.1 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 4/31 (12%) Frame = -2 Query: 275 PLPNPLPKTAK----TNEVWSLLSGAPTQTR 195 PLPNPLPK AK ++ +L+S +PT T+ Sbjct: 284 PLPNPLPKPAKSPPASSSTPTLISPSPTPTQ 314
>HUTH_SILPO (Q5LRD8) Histidine ammonia-lyase (EC 4.3.1.3) (Histidase)| Length = 512 Score = 29.6 bits (65), Expect = 3.1 Identities = 15/33 (45%), Positives = 20/33 (60%) Frame = +1 Query: 184 ILSHLVWVGAPLSRLQTSLVLAVFGKGLGRGAN 282 ILSH VGAP+ R L++ + LGRGA+ Sbjct: 81 ILSHCCGVGAPIPRRMARLMMVLKLLSLGRGAS 113
>HUTH_AGRRH (Q9KWE4) Histidine ammonia-lyase (EC 4.3.1.3) (Histidase)| Length = 511 Score = 29.6 bits (65), Expect = 3.1 Identities = 19/45 (42%), Positives = 24/45 (53%) Frame = +1 Query: 148 DRSS*AKLPGWAILSHLVWVGAPLSRLQTSLVLAVFGKGLGRGAN 282 D + A L ILSH VGAPL L++A+ LGRGA+ Sbjct: 68 DAADLATLQRNLILSHCCGVGAPLPENVVRLIMALKLISLGRGAS 112
>ACCA_CHLPN (Q9Z8C9) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) Length = 324 Score = 29.3 bits (64), Expect = 4.0 Identities = 17/43 (39%), Positives = 22/43 (51%) Frame = +1 Query: 175 GWAILSHLVWVGAPLSRLQTSLVLAVFGKGLGRGANVKRTGSS 303 GWAI +L LSRL T +++ V G+G GA G S Sbjct: 173 GWAIAKNLF----ELSRLATPVIIVVIGEGCSGGALGMAVGDS 211
>HUTIH_BRUME (Q8YD09) Bifunctional imidazolonepropionase/histidine ammonia-lyase| [Includes: Imidazolonepropionase (EC 3.5.2.7) (Imidazolone-5-propionate hydrolase); Histidine ammonia-lyase (EC 4.3.1.3) (Histidase)] Length = 925 Score = 29.3 bits (64), Expect = 4.0 Identities = 16/33 (48%), Positives = 20/33 (60%) Frame = +1 Query: 184 ILSHLVWVGAPLSRLQTSLVLAVFGKGLGRGAN 282 ILSH VG PLS L++A+ LGRGA+ Sbjct: 494 ILSHCCGVGEPLSENIVRLIMALKLVSLGRGAS 526
>HUTH_BRUSU (Q8FVB4) Histidine ammonia-lyase (EC 4.3.1.3) (Histidase)| Length = 511 Score = 29.3 bits (64), Expect = 4.0 Identities = 16/33 (48%), Positives = 20/33 (60%) Frame = +1 Query: 184 ILSHLVWVGAPLSRLQTSLVLAVFGKGLGRGAN 282 ILSH VG PLS L++A+ LGRGA+ Sbjct: 80 ILSHCCGVGEPLSENIVRLIMALKLVSLGRGAS 112
>HUTH_BRUAB (Q579E8) Histidine ammonia-lyase (EC 4.3.1.3) (Histidase)| Length = 511 Score = 29.3 bits (64), Expect = 4.0 Identities = 16/33 (48%), Positives = 20/33 (60%) Frame = +1 Query: 184 ILSHLVWVGAPLSRLQTSLVLAVFGKGLGRGAN 282 ILSH VG PLS L++A+ LGRGA+ Sbjct: 80 ILSHCCGVGEPLSENIVRLIMALKLVSLGRGAS 112
>HUTH_BURPS (Q63SH6) Histidine ammonia-lyase (EC 4.3.1.3) (Histidase)| Length = 507 Score = 29.3 bits (64), Expect = 4.0 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +1 Query: 184 ILSHLVWVGAPLSRLQTSLVLAVFGKGLGRG 276 +LSH V VG P++R L++A+ LGRG Sbjct: 79 VLSHAVGVGEPMARPVVRLLMALKLSSLGRG 109
>HUTH_BURMA (Q62LJ6) Histidine ammonia-lyase (EC 4.3.1.3) (Histidase)| Length = 507 Score = 29.3 bits (64), Expect = 4.0 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +1 Query: 184 ILSHLVWVGAPLSRLQTSLVLAVFGKGLGRG 276 +LSH V VG P++R L++A+ LGRG Sbjct: 79 VLSHAVGVGEPMARPVVRLLMALKLSSLGRG 109
>ENV_MLVF5 (P03390) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E; R protein] Length = 675 Score = 29.3 bits (64), Expect = 4.0 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 4/31 (12%) Frame = -2 Query: 275 PLPNPLPKTAKT----NEVWSLLSGAPTQTR 195 P PNPLPK AK+ N +L+S +PT T+ Sbjct: 284 PRPNPLPKPAKSPPASNSTPTLISPSPTPTQ 314
>HUTH_RHIME (O31197) Histidine ammonia-lyase (EC 4.3.1.3) (Histidase)| Length = 511 Score = 28.9 bits (63), Expect = 5.3 Identities = 19/45 (42%), Positives = 24/45 (53%) Frame = +1 Query: 148 DRSS*AKLPGWAILSHLVWVGAPLSRLQTSLVLAVFGKGLGRGAN 282 D S A L ILSH VG PL+ L++A+ LGRGA+ Sbjct: 68 DSSDVATLQRNLILSHCCGVGQPLTEDIVRLIMALKLISLGRGAS 112
>LEP4_AERSA (O68964) Type 4 prepilin-like proteins leader peptide-processing| enzyme [Includes: Leader peptidase (EC 3.4.23.43) (Prepilin peptidase); N-methyltransferase (EC 2.1.1.-)] Length = 291 Score = 28.9 bits (63), Expect = 5.3 Identities = 20/51 (39%), Positives = 25/51 (49%) Frame = +1 Query: 115 LLGKSEGLWHPDRSS*AKLPGWAILSHLVWVGAPLSRLQTSLVLAVFGKGL 267 LL EG+ + D A L W L W P+ L +SLV A+FG GL Sbjct: 205 LLTGKEGMGYGDFKLLAALGAW-----LGWQALPIVLLLSSLVGAIFGIGL 250
>HUTH_AZOSE (Q5NZX8) Histidine ammonia-lyase (EC 4.3.1.3) (Histidase)| Length = 526 Score = 28.5 bits (62), Expect = 6.9 Identities = 16/31 (51%), Positives = 18/31 (58%) Frame = +1 Query: 184 ILSHLVWVGAPLSRLQTSLVLAVFGKGLGRG 276 +LSH V VG PLS LVLA+ L RG Sbjct: 81 VLSHAVGVGEPLSAPTVRLVLALKIASLARG 111
>HUTH_AGRT5 (Q8U8Z7) Histidine ammonia-lyase (EC 4.3.1.3) (Histidase)| Length = 514 Score = 28.5 bits (62), Expect = 6.9 Identities = 18/45 (40%), Positives = 23/45 (51%) Frame = +1 Query: 148 DRSS*AKLPGWAILSHLVWVGAPLSRLQTSLVLAVFGKGLGRGAN 282 D + A L ILSH VG PL L++A+ LGRGA+ Sbjct: 71 DAADVATLQRNLILSHCCGVGVPLPENVVRLIMALKLVSLGRGAS 115
>PLSB_PHAVU (Q43822) Glycerol-3-phosphate acyltransferase, chloroplast| precursor (EC 2.3.1.15) (GPAT) Length = 461 Score = 28.1 bits (61), Expect = 9.0 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -3 Query: 205 PKPDD*VWPNLEALLKRTCLDATDPLI 125 PK ++ V N+ ALL R LD TDP + Sbjct: 147 PKANEIVLSNMIALLDRVFLDVTDPFV 173
>MURB_VIBVY (Q7MGQ8) UDP-N-acetylenolpyruvoylglucosamine reductase (EC| 1.1.1.158) (UDP-N-acetylmuramate dehydrogenase) Length = 347 Score = 28.1 bits (61), Expect = 9.0 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +2 Query: 245 WLFSVRDWAGVQM*NGQVHQKRAVGFNNLHS 337 WL D+ GVQ+ QVH K+A+ N S Sbjct: 270 WLIDQCDFKGVQVGGAQVHPKQALVLTNAQS 300
>MURB_VIBVU (Q8DD33) UDP-N-acetylenolpyruvoylglucosamine reductase (EC| 1.1.1.158) (UDP-N-acetylmuramate dehydrogenase) Length = 347 Score = 28.1 bits (61), Expect = 9.0 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +2 Query: 245 WLFSVRDWAGVQM*NGQVHQKRAVGFNNLHS 337 WL D+ GVQ+ QVH K+A+ N S Sbjct: 270 WLIDQCDFKGVQVGGAQVHPKQALVLTNAQS 300 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,771,553 Number of Sequences: 219361 Number of extensions: 1279974 Number of successful extensions: 2939 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2879 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2934 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
