ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags16g13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 135 1e-28
2gb|AC084766.8| Oryza sativa chromosome 3 BAC OSJNBb0048D20 genom... 135 1e-28
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 135 1e-28
4dbj|AK101145.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
5dbj|AK069760.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
6dbj|AK067678.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
7dbj|AK065781.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
8dbj|AK062206.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
9gb|BT023962.1| Zea mays clone EL01N0412B07 mRNA sequence 123 5e-25
10gb|AY109452.1| Zea mays CL2657_1 mRNA sequence 113 5e-22
11gb|BT018682.1| Zea mays clone EL01N0511F05.d mRNA sequence 80 7e-12
12ref|XM_470715.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.006
13gb|AC159316.3| Mus musculus BAC clone RP23-93F3 from chromosome ... 46 0.093
14gb|AC124750.5| Mus musculus BAC clone RP23-273A20 from 8, comple... 46 0.093
15gb|AC165370.4| Mus musculus BAC clone RP23-2N3 from chromosome 1... 42 1.4
16gb|AC110088.5| Homo sapiens BAC clone RP11-783N5 from 4, complet... 42 1.4
17gb|AC098822.3| Homo sapiens BAC clone RP11-338B23 from 4, comple... 42 1.4
18gb|BC093601.1| Rattus norvegicus similar to downregulated in ren... 42 1.4
19ref|NM_001025129.1| Rattus norvegicus similar to downregulated i... 42 1.4
20gb|AC133948.3| Mus musculus BAC clone RP24-226H19 from 10, compl... 42 1.4
21gb|AC147988.3| Mus musculus BAC clone RP24-459A9 from chromosome... 40 5.7
22emb|AL023913.6|HS1068F16 Human DNA sequence from clone RP5-1068F... 40 5.7
23gb|AC067718.20| Homo sapiens 3 BAC RP11-198M8 (Roswell Park Canc... 40 5.7
24gb|AC154876.7| Mus musculus chromosome 3, clone RP23-190D19, com... 40 5.7
25gb|AC109199.10| Mus musculus chromosome 1, clone RP23-29D20, com... 40 5.7
26gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 5.7 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  135 bits (68), Expect = 1e-28
 Identities = 121/135 (89%), Gaps = 4/135 (2%)
 Strand = Plus / Plus

                                                                            
Query: 118      ctagggaaatcagagggtctgtggcatccagacaggtcc-tcttaagcaaagcttccagg 176
                |||||||||| ||| ||||| |||||||||| ||||||| ||||| ||||||||||||||
Sbjct: 14711248 ctagggaaataagatggtctatggcatccaggcaggtccctcttaggcaaagcttccagg 14711307

                                                                            
Query: 177      ttggg-ccatactca--gtcatctggtttgggtaggggctccactaagcaggctccaaac 233
                ||||| ||||||||   ||||||||||||||| |||||||||| ||||||||||||| ||
Sbjct: 14711308 ttggggccatactcttggtcatctggtttgggaaggggctccaataagcaggctccatac 14711367

                               
Query: 234      ttcattagtcttggc 248
                |||||| ||||||||
Sbjct: 14711368 ttcattggtcttggc 14711382



 Score = 46.1 bits (23), Expect = 0.093
 Identities = 64/75 (85%), Gaps = 2/75 (2%)
 Strand = Plus / Plus

                                                                            
Query: 241      gtcttggctgttttcggtaaggga-ttgggcaggggtgcaaatgtgaaacggacaggttc 299
                ||||||||||||||  ||||||||  |||||| ||| ||||| |||||| | |||||| |
Sbjct: 14711391 gtcttggctgtttttagtaagggaggtgggcatggg-gcaaaggtgaaaagaacaggtcc 14711449

                               
Query: 300      atcagaagagagctg 314
                ||||||||| |||||
Sbjct: 14711450 atcagaagatagctg 14711464
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>gb|AC084766.8| Oryza sativa chromosome 3 BAC OSJNBb0048D20 genomic sequence, complete
             sequence
          Length = 130306

 Score =  135 bits (68), Expect = 1e-28
 Identities = 121/135 (89%), Gaps = 4/135 (2%)
 Strand = Plus / Plus

                                                                         
Query: 118   ctagggaaatcagagggtctgtggcatccagacaggtcc-tcttaagcaaagcttccagg 176
             |||||||||| ||| ||||| |||||||||| ||||||| ||||| ||||||||||||||
Sbjct: 50160 ctagggaaataagatggtctatggcatccaggcaggtccctcttaggcaaagcttccagg 50219

                                                                         
Query: 177   ttggg-ccatactca--gtcatctggtttgggtaggggctccactaagcaggctccaaac 233
             ||||| ||||||||   ||||||||||||||| |||||||||| ||||||||||||| ||
Sbjct: 50220 ttggggccatactcttggtcatctggtttgggaaggggctccaataagcaggctccatac 50279

                            
Query: 234   ttcattagtcttggc 248
             |||||| ||||||||
Sbjct: 50280 ttcattggtcttggc 50294



 Score = 46.1 bits (23), Expect = 0.093
 Identities = 64/75 (85%), Gaps = 2/75 (2%)
 Strand = Plus / Plus

                                                                         
Query: 241   gtcttggctgttttcggtaaggga-ttgggcaggggtgcaaatgtgaaacggacaggttc 299
             ||||||||||||||  ||||||||  |||||| ||| ||||| |||||| | |||||| |
Sbjct: 50303 gtcttggctgtttttagtaagggaggtgggcatggg-gcaaaggtgaaaagaacaggtcc 50361

                            
Query: 300   atcagaagagagctg 314
             ||||||||| |||||
Sbjct: 50362 atcagaagatagctg 50376
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  135 bits (68), Expect = 1e-28
 Identities = 121/135 (89%), Gaps = 4/135 (2%)
 Strand = Plus / Plus

                                                                            
Query: 118      ctagggaaatcagagggtctgtggcatccagacaggtcc-tcttaagcaaagcttccagg 176
                |||||||||| ||| ||||| |||||||||| ||||||| ||||| ||||||||||||||
Sbjct: 14705782 ctagggaaataagatggtctatggcatccaggcaggtccctcttaggcaaagcttccagg 14705841

                                                                            
Query: 177      ttggg-ccatactca--gtcatctggtttgggtaggggctccactaagcaggctccaaac 233
                ||||| ||||||||   ||||||||||||||| |||||||||| ||||||||||||| ||
Sbjct: 14705842 ttggggccatactcttggtcatctggtttgggaaggggctccaataagcaggctccatac 14705901

                               
Query: 234      ttcattagtcttggc 248
                |||||| ||||||||
Sbjct: 14705902 ttcattggtcttggc 14705916



 Score = 46.1 bits (23), Expect = 0.093
 Identities = 64/75 (85%), Gaps = 2/75 (2%)
 Strand = Plus / Plus

                                                                            
Query: 241      gtcttggctgttttcggtaaggga-ttgggcaggggtgcaaatgtgaaacggacaggttc 299
                ||||||||||||||  ||||||||  |||||| ||| ||||| |||||| | |||||| |
Sbjct: 14705925 gtcttggctgtttttagtaagggaggtgggcatggg-gcaaaggtgaaaagaacaggtcc 14705983

                               
Query: 300      atcagaagagagctg 314
                ||||||||| |||||
Sbjct: 14705984 atcagaagatagctg 14705998
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>dbj|AK101145.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033026O12, full
            insert sequence
          Length = 2971

 Score =  135 bits (68), Expect = 1e-28
 Identities = 121/135 (89%), Gaps = 4/135 (2%)
 Strand = Plus / Minus

                                                                        
Query: 118  ctagggaaatcagagggtctgtggcatccagacaggtcc-tcttaagcaaagcttccagg 176
            |||||||||| ||| ||||| |||||||||| ||||||| ||||| ||||||||||||||
Sbjct: 2059 ctagggaaataagatggtctatggcatccaggcaggtccctcttaggcaaagcttccagg 2000

                                                                        
Query: 177  ttggg-ccatactca--gtcatctggtttgggtaggggctccactaagcaggctccaaac 233
            ||||| ||||||||   ||||||||||||||| |||||||||| ||||||||||||| ||
Sbjct: 1999 ttggggccatactcttggtcatctggtttgggaaggggctccaataagcaggctccatac 1940

                           
Query: 234  ttcattagtcttggc 248
            |||||| ||||||||
Sbjct: 1939 ttcattggtcttggc 1925



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 375  gccagataacccgctgctgccagaaccaccact 407
            |||||||||||| ||||||||||||| ||||||
Sbjct: 1679 gccagataacccactgctgccagaacgaccact 1647



 Score = 46.1 bits (23), Expect = 0.093
 Identities = 64/75 (85%), Gaps = 2/75 (2%)
 Strand = Plus / Minus

                                                                        
Query: 241  gtcttggctgttttcggtaaggga-ttgggcaggggtgcaaatgtgaaacggacaggttc 299
            ||||||||||||||  ||||||||  |||||| ||| ||||| |||||| | |||||| |
Sbjct: 1916 gtcttggctgtttttagtaagggaggtgggcatggg-gcaaaggtgaaaagaacaggtcc 1858

                           
Query: 300  atcagaagagagctg 314
            ||||||||| |||||
Sbjct: 1857 atcagaagatagctg 1843
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>dbj|AK069760.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031F14, full
            insert sequence
          Length = 2121

 Score =  135 bits (68), Expect = 1e-28
 Identities = 121/135 (89%), Gaps = 4/135 (2%)
 Strand = Plus / Minus

                                                                        
Query: 118  ctagggaaatcagagggtctgtggcatccagacaggtcc-tcttaagcaaagcttccagg 176
            |||||||||| ||| ||||| |||||||||| ||||||| ||||| ||||||||||||||
Sbjct: 1951 ctagggaaataagatggtctatggcatccaggcaggtccctcttaggcaaagcttccagg 1892

                                                                        
Query: 177  ttggg-ccatactca--gtcatctggtttgggtaggggctccactaagcaggctccaaac 233
            ||||| ||||||||   ||||||||||||||| |||||||||| ||||||||||||| ||
Sbjct: 1891 ttggggccatactcttggtcatctggtttgggaaggggctccaataagcaggctccatac 1832

                           
Query: 234  ttcattagtcttggc 248
            |||||| ||||||||
Sbjct: 1831 ttcattggtcttggc 1817



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 375  gccagataacccgctgctgccagaaccaccact 407
            |||||||||||| ||||||||||||| ||||||
Sbjct: 1738 gccagataacccactgctgccagaacgaccact 1706
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>dbj|AK067678.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116I07, full
            insert sequence
          Length = 2834

 Score =  135 bits (68), Expect = 1e-28
 Identities = 121/135 (89%), Gaps = 4/135 (2%)
 Strand = Plus / Minus

                                                                        
Query: 118  ctagggaaatcagagggtctgtggcatccagacaggtcc-tcttaagcaaagcttccagg 176
            |||||||||| ||| ||||| |||||||||| ||||||| ||||| ||||||||||||||
Sbjct: 1895 ctagggaaataagatggtctatggcatccaggcaggtccctcttaggcaaagcttccagg 1836

                                                                        
Query: 177  ttggg-ccatactca--gtcatctggtttgggtaggggctccactaagcaggctccaaac 233
            ||||| ||||||||   ||||||||||||||| |||||||||| ||||||||||||| ||
Sbjct: 1835 ttggggccatactcttggtcatctggtttgggaaggggctccaataagcaggctccatac 1776

                           
Query: 234  ttcattagtcttggc 248
            |||||| ||||||||
Sbjct: 1775 ttcattggtcttggc 1761



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 375  gccagataacccgctgctgccagaaccaccact 407
            |||||||||||| ||||||||||||| ||||||
Sbjct: 1682 gccagataacccactgctgccagaacgaccact 1650
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>dbj|AK065781.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040N11, full
            insert sequence
          Length = 3152

 Score =  135 bits (68), Expect = 1e-28
 Identities = 121/135 (89%), Gaps = 4/135 (2%)
 Strand = Plus / Minus

                                                                        
Query: 118  ctagggaaatcagagggtctgtggcatccagacaggtcc-tcttaagcaaagcttccagg 176
            |||||||||| ||| ||||| |||||||||| ||||||| ||||| ||||||||||||||
Sbjct: 2115 ctagggaaataagatggtctatggcatccaggcaggtccctcttaggcaaagcttccagg 2056

                                                                        
Query: 177  ttggg-ccatactca--gtcatctggtttgggtaggggctccactaagcaggctccaaac 233
            ||||| ||||||||   ||||||||||||||| |||||||||| ||||||||||||| ||
Sbjct: 2055 ttggggccatactcttggtcatctggtttgggaaggggctccaataagcaggctccatac 1996

                           
Query: 234  ttcattagtcttggc 248
            |||||| ||||||||
Sbjct: 1995 ttcattggtcttggc 1981



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 375  gccagataacccgctgctgccagaaccaccact 407
            |||||||||||| ||||||||||||| ||||||
Sbjct: 1735 gccagataacccactgctgccagaacgaccact 1703



 Score = 46.1 bits (23), Expect = 0.093
 Identities = 64/75 (85%), Gaps = 2/75 (2%)
 Strand = Plus / Minus

                                                                        
Query: 241  gtcttggctgttttcggtaaggga-ttgggcaggggtgcaaatgtgaaacggacaggttc 299
            ||||||||||||||  ||||||||  |||||| ||| ||||| |||||| | |||||| |
Sbjct: 1972 gtcttggctgtttttagtaagggaggtgggcatggg-gcaaaggtgaaaagaacaggtcc 1914

                           
Query: 300  atcagaagagagctg 314
            ||||||||| |||||
Sbjct: 1913 atcagaagatagctg 1899
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>dbj|AK062206.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-H05, full
            insert sequence
          Length = 1545

 Score =  135 bits (68), Expect = 1e-28
 Identities = 121/135 (89%), Gaps = 4/135 (2%)
 Strand = Plus / Minus

                                                                        
Query: 118  ctagggaaatcagagggtctgtggcatccagacaggtcc-tcttaagcaaagcttccagg 176
            |||||||||| ||| ||||| |||||||||| ||||||| ||||| ||||||||||||||
Sbjct: 1450 ctagggaaataagatggtctatggcatccaggcaggtccctcttaggcaaagcttccagg 1391

                                                                        
Query: 177  ttggg-ccatactca--gtcatctggtttgggtaggggctccactaagcaggctccaaac 233
            ||||| ||||||||   ||||||||||||||| |||||||||| ||||||||||||| ||
Sbjct: 1390 ttggggccatactcttggtcatctggtttgggaaggggctccaataagcaggctccatac 1331

                           
Query: 234  ttcattagtcttggc 248
            |||||| ||||||||
Sbjct: 1330 ttcattggtcttggc 1316



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 375  gccagataacccgctgctgccagaaccaccact 407
            |||||||||||| ||||||||||||| ||||||
Sbjct: 1237 gccagataacccactgctgccagaacgaccact 1205
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>gb|BT023962.1| Zea mays clone EL01N0412B07 mRNA sequence
          Length = 2075

 Score =  123 bits (62), Expect = 5e-25
 Identities = 106/118 (89%), Gaps = 2/118 (1%)
 Strand = Plus / Minus

                                                                        
Query: 133  ggtctgtggcatccagacaggtcctcttaagcaaagcttccaggttgggccatactcagt 192
            ||||| ||||||||| || |||||||||||||||||||||||||||||||  | ||  ||
Sbjct: 1889 ggtctatggcatccacacgggtcctcttaagcaaagcttccaggttgggctct-cttggt 1831

                                                                      
Query: 193  catctggtttgggtaggggctccactaagcaggctccaaacttcattagtcttggctg 250
            ||||||||||||| |||||||||| |||||||||||||||||||| | ||||||||||
Sbjct: 1830 catctggtttgggaaggggctccaataagcaggctccaaacttcaat-gtcttggctg 1774



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                    
Query: 34   gaccttccaatacatgggttcagaacatttacggcagggc 73
            |||||| |||||||| |||||||||||||| |||||||||
Sbjct: 1981 gacctttcaatacataggttcagaacatttgcggcagggc 1942
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>gb|AY109452.1| Zea mays CL2657_1 mRNA sequence
          Length = 2231

 Score =  113 bits (57), Expect = 5e-22
 Identities = 94/105 (89%), Gaps = 1/105 (0%)
 Strand = Plus / Plus

                                                                       
Query: 133 ggtctgtggcatccagacaggtcctcttaagcaaagcttccaggttgggccatactcagt 192
           ||||| ||||||||| || |||||||||||||||||||||||||||||||  | ||  ||
Sbjct: 303 ggtctatggcatccacacgggtcctcttaagcaaagcttccaggttgggctct-cttggt 361

                                                        
Query: 193 catctggtttgggtaggggctccactaagcaggctccaaacttca 237
           ||||||||||||| |||| ||||| ||||||||||||||||||||
Sbjct: 362 catctggtttgggaagggactccaataagcaggctccaaacttca 406



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 68/75 (90%), Gaps = 1/75 (1%)
 Strand = Plus / Plus

                                                                       
Query: 163 gcaaagcttccaggttgggccatactcagtcatctggtttgggtaggggctccactaagc 222
           ||||||||||||||||||||  | ||  ||||||||||||||| |||||||||| |||||
Sbjct: 1   gcaaagcttccaggttgggctct-cttggtcatctggtttgggaaggggctccaataagc 59

                          
Query: 223 aggctccaaacttca 237
           |||||||||||||||
Sbjct: 60  aggctccaaacttca 74



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 34  gaccttccaatacatgggttcagaacatttacggcagggc 73
           |||||| |||||||| |||||||||||||| |||||||||
Sbjct: 211 gacctttcaatacataggttcagaacatttgcggcagggc 250
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>gb|BT018682.1| Zea mays clone EL01N0511F05.d mRNA sequence
          Length = 1447

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 56/60 (93%), Gaps = 1/60 (1%)
 Strand = Plus / Minus

                                                                        
Query: 191  gtcatctggtttgggtaggggctccactaagcaggctccaaacttcattagtcttggctg 250
            ||||||||||||||| |||||||||| |||||||||||||||||||| | ||||||||||
Sbjct: 1139 gtcatctggtttgggaaggggctccaataagcaggctccaaacttcaat-gtcttggctg 1081



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 34   gaccttccaatacatgggttcagaacatttacggcagggc 73
            |||||| | |||||| |||||||||||||| |||||||||
Sbjct: 1285 gacctttcgatacataggttcagaacatttgcggcagggc 1246
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>ref|XM_470715.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1629

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 375  gccagataacccgctgctgccagaaccaccact 407
            |||||||||||| ||||||||||||| ||||||
Sbjct: 1590 gccagataacccactgctgccagaacgaccact 1558
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>gb|AC159316.3| Mus musculus BAC clone RP23-93F3 from chromosome 8, complete sequence
          Length = 240812

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 138    gtggcatccagacaggtcctctt 160
              |||||||||||||||||||||||
Sbjct: 183110 gtggcatccagacaggtcctctt 183132
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>gb|AC124750.5| Mus musculus BAC clone RP23-273A20 from 8, complete sequence
          Length = 215042

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 138   gtggcatccagacaggtcctctt 160
             |||||||||||||||||||||||
Sbjct: 38944 gtggcatccagacaggtcctctt 38966
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>gb|AC165370.4| Mus musculus BAC clone RP23-2N3 from chromosome 10, complete sequence
          Length = 219653

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 106   aaatgtattctgctagggaaa 126
             |||||||||||||||||||||
Sbjct: 47275 aaatgtattctgctagggaaa 47255
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>gb|AC110088.5| Homo sapiens BAC clone RP11-783N5 from 4, complete sequence
          Length = 48126

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 234   ttcattagtcttggctgtttt 254
             |||||||||||||||||||||
Sbjct: 30048 ttcattagtcttggctgtttt 30028
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>gb|AC098822.3| Homo sapiens BAC clone RP11-338B23 from 4, complete sequence
          Length = 181792

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 88     gaggaaaagataaagagtaaa 108
              |||||||||||||||||||||
Sbjct: 158037 gaggaaaagataaagagtaaa 158057
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>gb|BC093601.1| Rattus norvegicus similar to downregulated in renal cell carcinoma,
            mRNA (cDNA clone MGC:105610 IMAGE:7316049), complete cds
          Length = 2875

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 120  agggaaatcagagggtctgtggcat 144
            ||||||||| |||||||||||||||
Sbjct: 1872 agggaaatccgagggtctgtggcat 1848
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>ref|NM_001025129.1| Rattus norvegicus similar to downregulated in renal cell carcinoma
            (RGD1306327), mRNA
          Length = 2875

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 120  agggaaatcagagggtctgtggcat 144
            ||||||||| |||||||||||||||
Sbjct: 1872 agggaaatccgagggtctgtggcat 1848
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>gb|AC133948.3| Mus musculus BAC clone RP24-226H19 from 10, complete sequence
          Length = 168206

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 100   aagagtaaatgtattctgcta 120
             |||||||||||||||||||||
Sbjct: 92031 aagagtaaatgtattctgcta 92051
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>gb|AC147988.3| Mus musculus BAC clone RP24-459A9 from chromosome 18, complete sequence
          Length = 155208

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    acaataatacagattcttat 29
             ||||||||||||||||||||
Sbjct: 63378 acaataatacagattcttat 63397
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>emb|AL023913.6|HS1068F16 Human DNA sequence from clone RP5-1068F16 on chromosome 20p12 Contains
             the 3' end of the SNAP25 gene for 25kDa
             synaptosomal-associated protein, the RPL23AP6 gene for
             ribosomal protein L23a pseudogene 6, part of a novel gene
             and a hypoxia induced gene 1 (HIG1) pseudogene, complete
             sequence
          Length = 140306

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   caggttcatcagaagagagc 312
             ||||||||||||||||||||
Sbjct: 57862 caggttcatcagaagagagc 57843
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>gb|AC067718.20| Homo sapiens 3 BAC RP11-198M8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 97995

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 322   caacaatctgcattctaata 341
             ||||||||||||||||||||
Sbjct: 82440 caacaatctgcattctaata 82421
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>gb|AC154876.7| Mus musculus chromosome 3, clone RP23-190D19, complete sequence
          Length = 196840

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   agagggtctgtggcatccag 148
             ||||||||||||||||||||
Sbjct: 65735 agagggtctgtggcatccag 65754
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>gb|AC109199.10| Mus musculus chromosome 1, clone RP23-29D20, complete sequence
          Length = 194339

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   gggaaatcagagggtctgtg 140
             ||||||||||||||||||||
Sbjct: 89067 gggaaatcagagggtctgtg 89086
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 289     cggacaggttcatcagaaga 308
               ||||||||||||||||||||
Sbjct: 6213069 cggacaggttcatcagaaga 6213088


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,770,748
Number of Sequences: 3902068
Number of extensions: 3770748
Number of successful extensions: 70590
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70468
Number of HSP's gapped (non-prelim): 114
length of query: 426
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 404
effective length of database: 17,147,199,772
effective search space: 6927468707888
effective search space used: 6927468707888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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