ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags16g09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LON_BUCAP (Q8K988) ATP-dependent protease La (EC 3.4.21.53) 30 1.9
2LON1_MYXXA (P36773) ATP-dependent protease La 1 (EC 3.4.21.53) 29 2.5
3MG101_CANGA (Q6FK91) Mitochondrial genome maintenance protein MG... 29 3.3

>LON_BUCAP (Q8K988) ATP-dependent protease La (EC 3.4.21.53)|
          Length = 777

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = -1

Query: 200 LDDKEERRLPLPLRCCQDLLVVSHYDVPLFVIRNLTSYCV 81
           ++ +   R+ +P+   +D++V  H  +PLFV R  + +C+
Sbjct: 1   MNSERSERIKIPVLPLRDVVVYPHMVIPLFVGRKKSIHCI 40



to top

>LON1_MYXXA (P36773) ATP-dependent protease La 1 (EC 3.4.21.53)|
          Length = 817

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -1

Query: 197 DDKEE---RRLPLPLRCCQDLLVVSHYDVPLFVIR 102
           DDK+E   R L +PL   +D++V  H  VPLFV R
Sbjct: 6   DDKKEAQKRGLTVPLLPLRDIIVFPHMVVPLFVGR 40



to top

>MG101_CANGA (Q6FK91) Mitochondrial genome maintenance protein MGM101,|
           mitochondrial precursor
          Length = 244

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 164 LRCCQDLLVVSHYDVPLFVIRNLTSYCV*K 75
           +RCC+DL + S    P+F+ R  T +CV K
Sbjct: 188 MRCCKDLGIGSELWDPVFIKRFKTEHCVEK 217


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,355,630
Number of Sequences: 219361
Number of extensions: 354132
Number of successful extensions: 623
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top