| Clone Name | rbags15p23 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK060582.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-H05, full insert sequence Length = 2221 Score = 274 bits (138), Expect = 3e-70 Identities = 274/318 (86%), Gaps = 1/318 (0%) Strand = Plus / Minus Query: 325 ctcctcacggtgatcctctgcctcttctcgcccatgtactcgttctgcgcaacgctgaca 384 |||||||| |||||||||||||||||||| ||||||||| ||||| | |||||||| Sbjct: 1909 ctcctcacagtgatcctctgcctcttctcattcatgtactcattctgagttacgctgacg 1850 Query: 385 cggaacaggtggggaacccaggtggcttccttcagcttgagctggaacatgtcatcgccc 444 ||||||||||| |||||||| || ||||||||||||||||| || | ||||||| ||| Sbjct: 1849 cggaacaggtgaggaacccaagtagcttccttcagcttgagaaggtaactgtcatcaccc 1790 Query: 445 tcctcttttctgatccgatcaagattatctgcactgcagccgacaatcctctctgcttgg 504 ||||| || || ||||||||||| | ||||||||||||||| |||||||||||||| || Sbjct: 1789 tcctccttcctaatccgatcaagctcatctgcactgcagccaacaatcctctctgcctga 1730 Query: 505 tcattgaaaagggacagccaggcctcacctgttggatcagagaccttgatcaccatgatg 564 |||||||| || || |||||||||||||| || || || ||||||||||| ||||||||| Sbjct: 1729 tcattgaacagagaaagccaggcctcaccagtagggtcggagaccttgatgaccatgatg 1670 Query: 565 tacctcaacgagcactcctcatagttcttctggcacccttcacaccagtatcctgattcc 624 ||||||| |||||||| ||| |||||||||||||||||||||||||||||||| ||| Sbjct: 1669 tacctcagtgagcactcagcatcattcttctggcacccttcacaccagtatcctga-tcc 1611 Query: 625 gagtgcctcggtcacctt 642 | |||||| |||||||| Sbjct: 1610 aattgcctcagtcacctt 1593
>dbj|AB111916.1| Oryza sativa (japonica cultivar-group) OsRPA70b mRNA for replication protein A 70b, complete cds Length = 1928 Score = 266 bits (134), Expect = 8e-68 Identities = 273/318 (85%), Gaps = 1/318 (0%) Strand = Plus / Minus Query: 325 ctcctcacggtgatcctctgcctcttctcgcccatgtactcgttctgcgcaacgctgaca 384 |||||||| |||||||||||||||||||| ||||||||| ||||| | |||||||| Sbjct: 1827 ctcctcacagtgatcctctgcctcttctcattcatgtactcattctgagttacgctgacg 1768 Query: 385 cggaacaggtggggaacccaggtggcttccttcagcttgagctggaacatgtcatcgccc 444 ||||||||||| |||||||| || ||||||||||||||||| || | ||||||| ||| Sbjct: 1767 cggaacaggtgaggaacccaagtagcttccttcagcttgagaaggtaactgtcatcaccc 1708 Query: 445 tcctcttttctgatccgatcaagattatctgcactgcagccgacaatcctctctgcttgg 504 ||||| || || ||||||||||| | |||||||||||||| |||||||||||||| || Sbjct: 1707 tcctccttcctaatccgatcaagctcgtctgcactgcagccaacaatcctctctgcctga 1648 Query: 505 tcattgaaaagggacagccaggcctcacctgttggatcagagaccttgatcaccatgatg 564 |||||||| || || |||||||||||||| || || || ||||||||||| ||||||||| Sbjct: 1647 tcattgaacagagaaagccaggcctcaccagtagggtcggagaccttgatgaccatgatg 1588 Query: 565 tacctcaacgagcactcctcatagttcttctggcacccttcacaccagtatcctgattcc 624 ||||||| |||||||| ||| |||||||||||||||||||||||||||||||| ||| Sbjct: 1587 tacctcagtgagcactcagcatcattcttctggcacccttcacaccagtatcctga-tcc 1529 Query: 625 gagtgcctcggtcacctt 642 | |||||| |||||||| Sbjct: 1528 aattgcctcagtcacctt 1511
>gb|AF009179.1|AF009179 Oryza sativa replication protein A1 (Os-RPA1) mRNA, complete cds Length = 2274 Score = 266 bits (134), Expect = 8e-68 Identities = 273/318 (85%), Gaps = 1/318 (0%) Strand = Plus / Minus Query: 325 ctcctcacggtgatcctctgcctcttctcgcccatgtactcgttctgcgcaacgctgaca 384 |||||||| |||||||||||||||||||| ||||||||| ||||| | |||||||| Sbjct: 1874 ctcctcacagtgatcctctgcctcttctcattcatgtactcattctgagttacgctgacg 1815 Query: 385 cggaacaggtggggaacccaggtggcttccttcagcttgagctggaacatgtcatcgccc 444 ||||||||||| |||||||| || ||||||||||||||||| || | ||||||| ||| Sbjct: 1814 cggaacaggtgaggaacccaagtagcttccttcagcttgagaaggtaactgtcatcaccc 1755 Query: 445 tcctcttttctgatccgatcaagattatctgcactgcagccgacaatcctctctgcttgg 504 ||||| || || ||||||||||| | |||||||||||||| |||||||||||||| || Sbjct: 1754 tcctccttcctaatccgatcaagctcgtctgcactgcagccaacaatcctctctgcctga 1695 Query: 505 tcattgaaaagggacagccaggcctcacctgttggatcagagaccttgatcaccatgatg 564 |||||||| || || |||||||||||||| || || || ||||||||||| ||||||||| Sbjct: 1694 tcattgaacagagaaagccaggcctcaccagtagggtcggagaccttgatgaccatgatg 1635 Query: 565 tacctcaacgagcactcctcatagttcttctggcacccttcacaccagtatcctgattcc 624 ||||||| |||||||| ||| |||||||||||||||||||||||||||||||| ||| Sbjct: 1634 tacctcagtgagcactcagcatcattcttctggcacccttcacaccagtatcctga-tcc 1576 Query: 625 gagtgcctcggtcacctt 642 | |||||| |||||||| Sbjct: 1575 cattgcctcagtcacctt 1558
>gb|AY105460.1| Zea mays PCO107885 mRNA sequence Length = 840 Score = 167 bits (84), Expect = 6e-38 Identities = 241/292 (82%), Gaps = 1/292 (0%) Strand = Plus / Plus Query: 327 cctcacggtgatcctctgcctcttctcgcccatgtactcgttctgcgcaacgctgacacg 386 |||||||||||| ||||||||||||||| |||||| || | ||||| ||||||||||| Sbjct: 454 cctcacggtgattctctgcctcttctcgttcatgtattcatgctgcgtgacgctgacacg 513 Query: 387 gaacaggtggggaacccaggtggcttccttcagcttgagctggaacatgtcatcgccctc 446 ||||||||| |||||||||||||||||||| |||||||| | | |||| || ||||| Sbjct: 514 gaacaggtgaggaacccaggtggcttccttgagcttgagaacgtagctgtcgtccccctc 573 Query: 447 ctcttttctgatccgatcaagattatctgcactgcagccgacaatcctctctgcttggt- 505 |||||| |||||||||||||| | || || |||||||| | ||| ||||||| || | Sbjct: 574 ctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctctgcatgctg 633 Query: 506 cattgaaaagggacagccaggcctcacctgttggatcagagaccttgatcaccatgatgt 565 ||||||| | |||| ||| ||||| || || ||||| |||| ||||||||||||||||| Sbjct: 634 cattgaacacagacacccaagcctcgccagtgggatcggagagcttgatcaccatgatgt 693 Query: 566 acctcaacgagcactcctcatagttcttctggcacccttcacaccagtatcc 617 | |||| ||||||||| || ||||| |||||||| || ||||||||||| Sbjct: 694 atctcagcgagcactcagagtaattcttttggcacccctcgcaccagtatcc 745
>gb|BT017328.1| Zea mays clone EL01N0320F08.c mRNA sequence Length = 821 Score = 149 bits (75), Expect = 1e-32 Identities = 210/255 (82%) Strand = Plus / Minus Query: 327 cctcacggtgatcctctgcctcttctcgcccatgtactcgttctgcgcaacgctgacacg 386 |||||||||||| ||||||||||||||| |||||| || | ||| | |||||||| || Sbjct: 388 cctcacggtgattctctgcctcttctcgttcatgtattcatgctgtgtgacgctgacgcg 329 Query: 387 gaacaggtggggaacccaggtggcttccttcagcttgagctggaacatgtcatcgccctc 446 ||||||||| |||||||||||||||||||| |||||||| | | | ||| || ||||| Sbjct: 328 gaacaggtgaggaacccaggtggcttccttgagcttgagaacgtagaagtcgtccccctc 269 Query: 447 ctcttttctgatccgatcaagattatctgcactgcagccgacaatcctctctgcttggtc 506 |||||| |||||||||||||| | || || |||||||| | ||| |||| || || || Sbjct: 268 ctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctccgcatgctc 209 Query: 507 attgaaaagggacagccaggcctcacctgttggatcagagaccttgatcaccatgatgta 566 ||||| | ||||| ||| |||||||| || ||||| |||| ||| |||||||||||||| Sbjct: 208 gttgaacacggacacccaagcctcaccagtgggatcggagagctttatcaccatgatgta 149 Query: 567 cctcaacgagcactc 581 |||| ||||||||| Sbjct: 148 tctcagcgagcactc 134
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 121 bits (61), Expect = 3e-24 Identities = 100/113 (88%) Strand = Plus / Minus Query: 457 atccgatcaagattatctgcactgcagccgacaatcctctctgcttggtcattgaaaagg 516 ||||||||||| | ||||||||||||||| |||||||||||||| || |||||||| || Sbjct: 5950647 atccgatcaagctcatctgcactgcagccaacaatcctctctgcctgatcattgaacaga 5950588 Query: 517 gacagccaggcctcacctgttggatcagagaccttgatcaccatgatgtacct 569 || |||||||||||||| || || || ||||||||||| |||||||||||||| Sbjct: 5950587 gaaagccaggcctcaccagtagggtcggagaccttgatgaccatgatgtacct 5950535 Score = 105 bits (53), Expect = 2e-19 Identities = 89/101 (88%) Strand = Plus / Minus Query: 325 ctcctcacggtgatcctctgcctcttctcgcccatgtactcgttctgcgcaacgctgaca 384 |||||||| |||||||||||||||||||| ||||||||| ||||| | |||||||| Sbjct: 5950989 ctcctcacagtgatcctctgcctcttctcattcatgtactcattctgagttacgctgacg 5950930 Query: 385 cggaacaggtggggaacccaggtggcttccttcagcttgag 425 ||||||||||| |||||||| || ||||||||||||||||| Sbjct: 5950929 cggaacaggtgaggaacccaagtagcttccttcagcttgag 5950889 Score = 67.9 bits (34), Expect = 4e-08 Identities = 50/54 (92%), Gaps = 1/54 (1%) Strand = Plus / Minus Query: 589 ttcttctggcacccttcacaccagtatcctgattccgagtgcctcggtcacctt 642 |||||||||||||||||||||||||||||||| ||| | |||||| |||||||| Sbjct: 5950426 ttcttctggcacccttcacaccagtatcctga-tccaattgcctcagtcacctt 5950374
>gb|AC134241.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0085F02, complete sequence Length = 128535 Score = 121 bits (61), Expect = 3e-24 Identities = 100/113 (88%) Strand = Plus / Minus Query: 457 atccgatcaagattatctgcactgcagccgacaatcctctctgcttggtcattgaaaagg 516 ||||||||||| | ||||||||||||||| |||||||||||||| || |||||||| || Sbjct: 100269 atccgatcaagctcatctgcactgcagccaacaatcctctctgcctgatcattgaacaga 100210 Query: 517 gacagccaggcctcacctgttggatcagagaccttgatcaccatgatgtacct 569 || |||||||||||||| || || || ||||||||||| |||||||||||||| Sbjct: 100209 gaaagccaggcctcaccagtagggtcggagaccttgatgaccatgatgtacct 100157 Score = 105 bits (53), Expect = 2e-19 Identities = 89/101 (88%) Strand = Plus / Minus Query: 325 ctcctcacggtgatcctctgcctcttctcgcccatgtactcgttctgcgcaacgctgaca 384 |||||||| |||||||||||||||||||| ||||||||| ||||| | |||||||| Sbjct: 100611 ctcctcacagtgatcctctgcctcttctcattcatgtactcattctgagttacgctgacg 100552 Query: 385 cggaacaggtggggaacccaggtggcttccttcagcttgag 425 ||||||||||| |||||||| || ||||||||||||||||| Sbjct: 100551 cggaacaggtgaggaacccaagtagcttccttcagcttgag 100511 Score = 67.9 bits (34), Expect = 4e-08 Identities = 50/54 (92%), Gaps = 1/54 (1%) Strand = Plus / Minus Query: 589 ttcttctggcacccttcacaccagtatcctgattccgagtgcctcggtcacctt 642 |||||||||||||||||||||||||||||||| ||| | |||||| |||||||| Sbjct: 100048 ttcttctggcacccttcacaccagtatcctga-tccaattgcctcagtcacctt 99996
>gb|AC135158.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1193C08, complete sequence Length = 111961 Score = 121 bits (61), Expect = 3e-24 Identities = 100/113 (88%) Strand = Plus / Minus Query: 457 atccgatcaagattatctgcactgcagccgacaatcctctctgcttggtcattgaaaagg 516 ||||||||||| | ||||||||||||||| |||||||||||||| || |||||||| || Sbjct: 9182 atccgatcaagctcatctgcactgcagccaacaatcctctctgcctgatcattgaacaga 9123 Query: 517 gacagccaggcctcacctgttggatcagagaccttgatcaccatgatgtacct 569 || |||||||||||||| || || || ||||||||||| |||||||||||||| Sbjct: 9122 gaaagccaggcctcaccagtagggtcggagaccttgatgaccatgatgtacct 9070 Score = 105 bits (53), Expect = 2e-19 Identities = 89/101 (88%) Strand = Plus / Minus Query: 325 ctcctcacggtgatcctctgcctcttctcgcccatgtactcgttctgcgcaacgctgaca 384 |||||||| |||||||||||||||||||| ||||||||| ||||| | |||||||| Sbjct: 9524 ctcctcacagtgatcctctgcctcttctcattcatgtactcattctgagttacgctgacg 9465 Query: 385 cggaacaggtggggaacccaggtggcttccttcagcttgag 425 ||||||||||| |||||||| || ||||||||||||||||| Sbjct: 9464 cggaacaggtgaggaacccaagtagcttccttcagcttgag 9424 Score = 67.9 bits (34), Expect = 4e-08 Identities = 50/54 (92%), Gaps = 1/54 (1%) Strand = Plus / Minus Query: 589 ttcttctggcacccttcacaccagtatcctgattccgagtgcctcggtcacctt 642 |||||||||||||||||||||||||||||||| ||| | |||||| |||||||| Sbjct: 8961 ttcttctggcacccttcacaccagtatcctga-tccaattgcctcagtcacctt 8909
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 121 bits (61), Expect = 3e-24 Identities = 100/113 (88%) Strand = Plus / Minus Query: 457 atccgatcaagattatctgcactgcagccgacaatcctctctgcttggtcattgaaaagg 516 ||||||||||| | ||||||||||||||| |||||||||||||| || |||||||| || Sbjct: 5949860 atccgatcaagctcatctgcactgcagccaacaatcctctctgcctgatcattgaacaga 5949801 Query: 517 gacagccaggcctcacctgttggatcagagaccttgatcaccatgatgtacct 569 || |||||||||||||| || || || ||||||||||| |||||||||||||| Sbjct: 5949800 gaaagccaggcctcaccagtagggtcggagaccttgatgaccatgatgtacct 5949748 Score = 105 bits (53), Expect = 2e-19 Identities = 89/101 (88%) Strand = Plus / Minus Query: 325 ctcctcacggtgatcctctgcctcttctcgcccatgtactcgttctgcgcaacgctgaca 384 |||||||| |||||||||||||||||||| ||||||||| ||||| | |||||||| Sbjct: 5950202 ctcctcacagtgatcctctgcctcttctcattcatgtactcattctgagttacgctgacg 5950143 Query: 385 cggaacaggtggggaacccaggtggcttccttcagcttgag 425 ||||||||||| |||||||| || ||||||||||||||||| Sbjct: 5950142 cggaacaggtgaggaacccaagtagcttccttcagcttgag 5950102 Score = 67.9 bits (34), Expect = 4e-08 Identities = 50/54 (92%), Gaps = 1/54 (1%) Strand = Plus / Minus Query: 589 ttcttctggcacccttcacaccagtatcctgattccgagtgcctcggtcacctt 642 |||||||||||||||||||||||||||||||| ||| | |||||| |||||||| Sbjct: 5949639 ttcttctggcacccttcacaccagtatcctga-tccaattgcctcagtcacctt 5949587
>gb|AY111108.1| Zea mays CL11267_1 mRNA sequence Length = 747 Score = 69.9 bits (35), Expect = 1e-08 Identities = 44/47 (93%) Strand = Plus / Plus Query: 376 acgctgacacggaacaggtggggaacccaggtggcttccttcagctt 422 |||||||| ||||||||||| |||||||||||||||||||| ||||| Sbjct: 417 acgctgacgcggaacaggtgaggaacccaggtggcttccttgagctt 463
>gb|AC141900.3| Mus musculus BAC clone RP23-47I1 from chromosome 12, complete sequence Length = 145868 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 509 tgaaaagggacagccaggcct 529 ||||||||||||||||||||| Sbjct: 135099 tgaaaagggacagccaggcct 135079
>gb|AC139238.5| Mus musculus BAC clone RP24-403G3 from chromosome 12, complete sequence Length = 170371 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 509 tgaaaagggacagccaggcct 529 ||||||||||||||||||||| Sbjct: 13981 tgaaaagggacagccaggcct 13961
>gb|AE017352.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 12, complete sequence Length = 906719 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 catcgccctcctcttttctg 456 |||||||||||||||||||| Sbjct: 436926 catcgccctcctcttttctg 436907
>gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome Length = 1937111 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 gcattctcctcttgcatctt 251 |||||||||||||||||||| Sbjct: 1376383 gcattctcctcttgcatctt 1376364
>ref|XM_658482.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5970.2), mRNA Length = 2070 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 ggtggcttccttcagcttga 424 |||||||||||||||||||| Sbjct: 2002 ggtggcttccttcagcttga 2021
>ref|XM_568051.1| Cryptococcus neoformans var. neoformans JEC21 30s ribosomal protein s13 (CNL05120) partial mRNA Length = 623 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 catcgccctcctcttttctg 456 |||||||||||||||||||| Sbjct: 360 catcgccctcctcttttctg 341
>gb|AC132125.3| Mus musculus BAC clone RP23-369L24 from chromosome 13, complete sequence Length = 101318 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 466 agattatctgcactgcagcc 485 |||||||||||||||||||| Sbjct: 12380 agattatctgcactgcagcc 12361
>ref|XM_783299.1| PREDICTED: Strongylocentrotus purpuratus similar to CG4928-PB, isoform B (LOC583389), mRNA Length = 1464 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 83 agcagcaaacttgggccaaaacat 106 ||||||| |||||||||||||||| Sbjct: 199 agcagcagacttgggccaaaacat 222
>emb|AL355136.19| Human DNA sequence from clone RP11-435P18 on chromosome 13, complete sequence Length = 200059 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 gcttcatctagcaaagctat 127 |||||||||||||||||||| Sbjct: 72592 gcttcatctagcaaagctat 72611
>emb|AL139385.12| Human DNA sequence from clone RP11-90L1 on chromosome 13 Contains the 3' end of the COL4A2 gene for collagen type IV alpha 2, the RAB20 gene for a RAS oncogene family member, a novel gene (FLJ10769 FLJ25038 FLJ14198), the 5' end of a novel gene (FLJ12118) and three CpG islands, complete sequence Length = 177392 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 ccaggcctcacctgttggat 541 |||||||||||||||||||| Sbjct: 113380 ccaggcctcacctgttggat 113399
>emb|BX572623.8| Human DNA sequence from clone XXyac-22CH10 on chromosome 1, complete sequence Length = 112168 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 ccagcagggggcggtgaact 207 |||||||||||||||||||| Sbjct: 35640 ccagcagggggcggtgaact 35621
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 281 caagctggtacctcgcttcagcag 304 ||||||||| |||||||||||||| Sbjct: 1345580 caagctggttcctcgcttcagcag 1345557
>dbj|AP005311.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0482F12 Length = 147735 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 281 caagctggtacctcgcttcagcag 304 ||||||||| |||||||||||||| Sbjct: 26852 caagctggttcctcgcttcagcag 26829
>emb|BX640519.2| Human DNA sequence from clone RP11-157L8 on chromosome 1, complete sequence Length = 186829 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 ccagcagggggcggtgaact 207 |||||||||||||||||||| Sbjct: 185263 ccagcagggggcggtgaact 185244
>gb|AC151530.2| Mus musculus BAC clone RP24-330K6 from 13, complete sequence Length = 155065 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 466 agattatctgcactgcagcc 485 |||||||||||||||||||| Sbjct: 100736 agattatctgcactgcagcc 100717
>gb|AC161604.6| Mus musculus BAC clone RP23-245O13 from chromosome 3, complete sequence Length = 210802 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 catcttctagctggaggtga 265 |||||||||||||||||||| Sbjct: 84543 catcttctagctggaggtga 84524 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,857,411 Number of Sequences: 3902068 Number of extensions: 5857411 Number of successful extensions: 107544 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107392 Number of HSP's gapped (non-prelim): 146 length of query: 648 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 625 effective length of database: 17,143,297,704 effective search space: 10714561065000 effective search space used: 10714561065000 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)