ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15p23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK060582.1| Oryza sativa (japonica cultivar-group) cDNA clon... 274 3e-70
2dbj|AB111916.1| Oryza sativa (japonica cultivar-group) OsRPA70b ... 266 8e-68
3gb|AF009179.1|AF009179 Oryza sativa replication protein A1 (Os-R... 266 8e-68
4gb|AY105460.1| Zea mays PCO107885 mRNA sequence 167 6e-38
5gb|BT017328.1| Zea mays clone EL01N0320F08.c mRNA sequence 149 1e-32
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 121 3e-24
7gb|AC134241.2| Oryza sativa (japonica cultivar-group) chromosome... 121 3e-24
8gb|AC135158.2| Oryza sativa (japonica cultivar-group) chromosome... 121 3e-24
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
10gb|AY111108.1| Zea mays CL11267_1 mRNA sequence 70 1e-08
11gb|AC141900.3| Mus musculus BAC clone RP23-47I1 from chromosome ... 42 2.2
12gb|AC139238.5| Mus musculus BAC clone RP24-403G3 from chromosome... 42 2.2
13gb|AE017352.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 8.8
14gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome 40 8.8
15ref|XM_658482.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 8.8
16ref|XM_568051.1| Cryptococcus neoformans var. neoformans JEC21 3... 40 8.8
17gb|AC132125.3| Mus musculus BAC clone RP23-369L24 from chromosom... 40 8.8
18ref|XM_783299.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 8.8
19emb|AL355136.19| Human DNA sequence from clone RP11-435P18 on ch... 40 8.8
20emb|AL139385.12| Human DNA sequence from clone RP11-90L1 on chro... 40 8.8
21emb|BX572623.8| Human DNA sequence from clone XXyac-22CH10 on ch... 40 8.8
22dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
23dbj|AP005311.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
24emb|BX640519.2| Human DNA sequence from clone RP11-157L8 on chro... 40 8.8
25gb|AC151530.2| Mus musculus BAC clone RP24-330K6 from 13, comple... 40 8.8
26gb|AC161604.6| Mus musculus BAC clone RP23-245O13 from chromosom... 40 8.8

>dbj|AK060582.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-H05, full
            insert sequence
          Length = 2221

 Score =  274 bits (138), Expect = 3e-70
 Identities = 274/318 (86%), Gaps = 1/318 (0%)
 Strand = Plus / Minus

                                                                        
Query: 325  ctcctcacggtgatcctctgcctcttctcgcccatgtactcgttctgcgcaacgctgaca 384
            |||||||| ||||||||||||||||||||   ||||||||| ||||| |  |||||||| 
Sbjct: 1909 ctcctcacagtgatcctctgcctcttctcattcatgtactcattctgagttacgctgacg 1850

                                                                        
Query: 385  cggaacaggtggggaacccaggtggcttccttcagcttgagctggaacatgtcatcgccc 444
            ||||||||||| |||||||| || |||||||||||||||||  || |  ||||||| |||
Sbjct: 1849 cggaacaggtgaggaacccaagtagcttccttcagcttgagaaggtaactgtcatcaccc 1790

                                                                        
Query: 445  tcctcttttctgatccgatcaagattatctgcactgcagccgacaatcctctctgcttgg 504
            ||||| || || ||||||||||| | ||||||||||||||| |||||||||||||| || 
Sbjct: 1789 tcctccttcctaatccgatcaagctcatctgcactgcagccaacaatcctctctgcctga 1730

                                                                        
Query: 505  tcattgaaaagggacagccaggcctcacctgttggatcagagaccttgatcaccatgatg 564
            |||||||| || || |||||||||||||| || || || ||||||||||| |||||||||
Sbjct: 1729 tcattgaacagagaaagccaggcctcaccagtagggtcggagaccttgatgaccatgatg 1670

                                                                        
Query: 565  tacctcaacgagcactcctcatagttcttctggcacccttcacaccagtatcctgattcc 624
            |||||||  ||||||||  |||  |||||||||||||||||||||||||||||||| |||
Sbjct: 1669 tacctcagtgagcactcagcatcattcttctggcacccttcacaccagtatcctga-tcc 1611

                              
Query: 625  gagtgcctcggtcacctt 642
             | |||||| ||||||||
Sbjct: 1610 aattgcctcagtcacctt 1593



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>dbj|AB111916.1| Oryza sativa (japonica cultivar-group) OsRPA70b mRNA for replication
            protein A 70b, complete cds
          Length = 1928

 Score =  266 bits (134), Expect = 8e-68
 Identities = 273/318 (85%), Gaps = 1/318 (0%)
 Strand = Plus / Minus

                                                                        
Query: 325  ctcctcacggtgatcctctgcctcttctcgcccatgtactcgttctgcgcaacgctgaca 384
            |||||||| ||||||||||||||||||||   ||||||||| ||||| |  |||||||| 
Sbjct: 1827 ctcctcacagtgatcctctgcctcttctcattcatgtactcattctgagttacgctgacg 1768

                                                                        
Query: 385  cggaacaggtggggaacccaggtggcttccttcagcttgagctggaacatgtcatcgccc 444
            ||||||||||| |||||||| || |||||||||||||||||  || |  ||||||| |||
Sbjct: 1767 cggaacaggtgaggaacccaagtagcttccttcagcttgagaaggtaactgtcatcaccc 1708

                                                                        
Query: 445  tcctcttttctgatccgatcaagattatctgcactgcagccgacaatcctctctgcttgg 504
            ||||| || || ||||||||||| |  |||||||||||||| |||||||||||||| || 
Sbjct: 1707 tcctccttcctaatccgatcaagctcgtctgcactgcagccaacaatcctctctgcctga 1648

                                                                        
Query: 505  tcattgaaaagggacagccaggcctcacctgttggatcagagaccttgatcaccatgatg 564
            |||||||| || || |||||||||||||| || || || ||||||||||| |||||||||
Sbjct: 1647 tcattgaacagagaaagccaggcctcaccagtagggtcggagaccttgatgaccatgatg 1588

                                                                        
Query: 565  tacctcaacgagcactcctcatagttcttctggcacccttcacaccagtatcctgattcc 624
            |||||||  ||||||||  |||  |||||||||||||||||||||||||||||||| |||
Sbjct: 1587 tacctcagtgagcactcagcatcattcttctggcacccttcacaccagtatcctga-tcc 1529

                              
Query: 625  gagtgcctcggtcacctt 642
             | |||||| ||||||||
Sbjct: 1528 aattgcctcagtcacctt 1511



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>gb|AF009179.1|AF009179 Oryza sativa replication protein A1 (Os-RPA1) mRNA, complete cds
          Length = 2274

 Score =  266 bits (134), Expect = 8e-68
 Identities = 273/318 (85%), Gaps = 1/318 (0%)
 Strand = Plus / Minus

                                                                        
Query: 325  ctcctcacggtgatcctctgcctcttctcgcccatgtactcgttctgcgcaacgctgaca 384
            |||||||| ||||||||||||||||||||   ||||||||| ||||| |  |||||||| 
Sbjct: 1874 ctcctcacagtgatcctctgcctcttctcattcatgtactcattctgagttacgctgacg 1815

                                                                        
Query: 385  cggaacaggtggggaacccaggtggcttccttcagcttgagctggaacatgtcatcgccc 444
            ||||||||||| |||||||| || |||||||||||||||||  || |  ||||||| |||
Sbjct: 1814 cggaacaggtgaggaacccaagtagcttccttcagcttgagaaggtaactgtcatcaccc 1755

                                                                        
Query: 445  tcctcttttctgatccgatcaagattatctgcactgcagccgacaatcctctctgcttgg 504
            ||||| || || ||||||||||| |  |||||||||||||| |||||||||||||| || 
Sbjct: 1754 tcctccttcctaatccgatcaagctcgtctgcactgcagccaacaatcctctctgcctga 1695

                                                                        
Query: 505  tcattgaaaagggacagccaggcctcacctgttggatcagagaccttgatcaccatgatg 564
            |||||||| || || |||||||||||||| || || || ||||||||||| |||||||||
Sbjct: 1694 tcattgaacagagaaagccaggcctcaccagtagggtcggagaccttgatgaccatgatg 1635

                                                                        
Query: 565  tacctcaacgagcactcctcatagttcttctggcacccttcacaccagtatcctgattcc 624
            |||||||  ||||||||  |||  |||||||||||||||||||||||||||||||| |||
Sbjct: 1634 tacctcagtgagcactcagcatcattcttctggcacccttcacaccagtatcctga-tcc 1576

                              
Query: 625  gagtgcctcggtcacctt 642
             | |||||| ||||||||
Sbjct: 1575 cattgcctcagtcacctt 1558



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>gb|AY105460.1| Zea mays PCO107885 mRNA sequence
          Length = 840

 Score =  167 bits (84), Expect = 6e-38
 Identities = 241/292 (82%), Gaps = 1/292 (0%)
 Strand = Plus / Plus

                                                                       
Query: 327 cctcacggtgatcctctgcctcttctcgcccatgtactcgttctgcgcaacgctgacacg 386
           |||||||||||| |||||||||||||||  |||||| || | |||||  |||||||||||
Sbjct: 454 cctcacggtgattctctgcctcttctcgttcatgtattcatgctgcgtgacgctgacacg 513

                                                                       
Query: 387 gaacaggtggggaacccaggtggcttccttcagcttgagctggaacatgtcatcgccctc 446
           ||||||||| |||||||||||||||||||| ||||||||   | |  |||| || |||||
Sbjct: 514 gaacaggtgaggaacccaggtggcttccttgagcttgagaacgtagctgtcgtccccctc 573

                                                                       
Query: 447 ctcttttctgatccgatcaagattatctgcactgcagccgacaatcctctctgcttggt- 505
           |||||| |||||||||||||| |  || || |||||||| |  ||| ||||||| || | 
Sbjct: 574 ctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctctgcatgctg 633

                                                                       
Query: 506 cattgaaaagggacagccaggcctcacctgttggatcagagaccttgatcaccatgatgt 565
           ||||||| |  |||| ||| ||||| || || ||||| |||| |||||||||||||||||
Sbjct: 634 cattgaacacagacacccaagcctcgccagtgggatcggagagcttgatcaccatgatgt 693

                                                               
Query: 566 acctcaacgagcactcctcatagttcttctggcacccttcacaccagtatcc 617
           | |||| |||||||||    || ||||| |||||||| || |||||||||||
Sbjct: 694 atctcagcgagcactcagagtaattcttttggcacccctcgcaccagtatcc 745



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>gb|BT017328.1| Zea mays clone EL01N0320F08.c mRNA sequence
          Length = 821

 Score =  149 bits (75), Expect = 1e-32
 Identities = 210/255 (82%)
 Strand = Plus / Minus

                                                                       
Query: 327 cctcacggtgatcctctgcctcttctcgcccatgtactcgttctgcgcaacgctgacacg 386
           |||||||||||| |||||||||||||||  |||||| || | ||| |  |||||||| ||
Sbjct: 388 cctcacggtgattctctgcctcttctcgttcatgtattcatgctgtgtgacgctgacgcg 329

                                                                       
Query: 387 gaacaggtggggaacccaggtggcttccttcagcttgagctggaacatgtcatcgccctc 446
           ||||||||| |||||||||||||||||||| ||||||||   | | | ||| || |||||
Sbjct: 328 gaacaggtgaggaacccaggtggcttccttgagcttgagaacgtagaagtcgtccccctc 269

                                                                       
Query: 447 ctcttttctgatccgatcaagattatctgcactgcagccgacaatcctctctgcttggtc 506
           |||||| |||||||||||||| |  || || |||||||| |  ||| |||| || || ||
Sbjct: 268 ctctttcctgatccgatcaagctcgtcggcgctgcagccaatgatcttctccgcatgctc 209

                                                                       
Query: 507 attgaaaagggacagccaggcctcacctgttggatcagagaccttgatcaccatgatgta 566
            ||||| | ||||| ||| |||||||| || ||||| |||| ||| ||||||||||||||
Sbjct: 208 gttgaacacggacacccaagcctcaccagtgggatcggagagctttatcaccatgatgta 149

                          
Query: 567 cctcaacgagcactc 581
            |||| |||||||||
Sbjct: 148 tctcagcgagcactc 134



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  121 bits (61), Expect = 3e-24
 Identities = 100/113 (88%)
 Strand = Plus / Minus

                                                                           
Query: 457     atccgatcaagattatctgcactgcagccgacaatcctctctgcttggtcattgaaaagg 516
               ||||||||||| | ||||||||||||||| |||||||||||||| || |||||||| || 
Sbjct: 5950647 atccgatcaagctcatctgcactgcagccaacaatcctctctgcctgatcattgaacaga 5950588

                                                                    
Query: 517     gacagccaggcctcacctgttggatcagagaccttgatcaccatgatgtacct 569
               || |||||||||||||| || || || ||||||||||| ||||||||||||||
Sbjct: 5950587 gaaagccaggcctcaccagtagggtcggagaccttgatgaccatgatgtacct 5950535



 Score =  105 bits (53), Expect = 2e-19
 Identities = 89/101 (88%)
 Strand = Plus / Minus

                                                                           
Query: 325     ctcctcacggtgatcctctgcctcttctcgcccatgtactcgttctgcgcaacgctgaca 384
               |||||||| ||||||||||||||||||||   ||||||||| ||||| |  |||||||| 
Sbjct: 5950989 ctcctcacagtgatcctctgcctcttctcattcatgtactcattctgagttacgctgacg 5950930

                                                        
Query: 385     cggaacaggtggggaacccaggtggcttccttcagcttgag 425
               ||||||||||| |||||||| || |||||||||||||||||
Sbjct: 5950929 cggaacaggtgaggaacccaagtagcttccttcagcttgag 5950889



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 50/54 (92%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                     
Query: 589     ttcttctggcacccttcacaccagtatcctgattccgagtgcctcggtcacctt 642
               |||||||||||||||||||||||||||||||| ||| | |||||| ||||||||
Sbjct: 5950426 ttcttctggcacccttcacaccagtatcctga-tccaattgcctcagtcacctt 5950374



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>gb|AC134241.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0085F02,
              complete sequence
          Length = 128535

 Score =  121 bits (61), Expect = 3e-24
 Identities = 100/113 (88%)
 Strand = Plus / Minus

                                                                          
Query: 457    atccgatcaagattatctgcactgcagccgacaatcctctctgcttggtcattgaaaagg 516
              ||||||||||| | ||||||||||||||| |||||||||||||| || |||||||| || 
Sbjct: 100269 atccgatcaagctcatctgcactgcagccaacaatcctctctgcctgatcattgaacaga 100210

                                                                   
Query: 517    gacagccaggcctcacctgttggatcagagaccttgatcaccatgatgtacct 569
              || |||||||||||||| || || || ||||||||||| ||||||||||||||
Sbjct: 100209 gaaagccaggcctcaccagtagggtcggagaccttgatgaccatgatgtacct 100157



 Score =  105 bits (53), Expect = 2e-19
 Identities = 89/101 (88%)
 Strand = Plus / Minus

                                                                          
Query: 325    ctcctcacggtgatcctctgcctcttctcgcccatgtactcgttctgcgcaacgctgaca 384
              |||||||| ||||||||||||||||||||   ||||||||| ||||| |  |||||||| 
Sbjct: 100611 ctcctcacagtgatcctctgcctcttctcattcatgtactcattctgagttacgctgacg 100552

                                                       
Query: 385    cggaacaggtggggaacccaggtggcttccttcagcttgag 425
              ||||||||||| |||||||| || |||||||||||||||||
Sbjct: 100551 cggaacaggtgaggaacccaagtagcttccttcagcttgag 100511



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 50/54 (92%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                    
Query: 589    ttcttctggcacccttcacaccagtatcctgattccgagtgcctcggtcacctt 642
              |||||||||||||||||||||||||||||||| ||| | |||||| ||||||||
Sbjct: 100048 ttcttctggcacccttcacaccagtatcctga-tccaattgcctcagtcacctt 99996



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>gb|AC135158.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1193C08,
            complete sequence
          Length = 111961

 Score =  121 bits (61), Expect = 3e-24
 Identities = 100/113 (88%)
 Strand = Plus / Minus

                                                                        
Query: 457  atccgatcaagattatctgcactgcagccgacaatcctctctgcttggtcattgaaaagg 516
            ||||||||||| | ||||||||||||||| |||||||||||||| || |||||||| || 
Sbjct: 9182 atccgatcaagctcatctgcactgcagccaacaatcctctctgcctgatcattgaacaga 9123

                                                                 
Query: 517  gacagccaggcctcacctgttggatcagagaccttgatcaccatgatgtacct 569
            || |||||||||||||| || || || ||||||||||| ||||||||||||||
Sbjct: 9122 gaaagccaggcctcaccagtagggtcggagaccttgatgaccatgatgtacct 9070



 Score =  105 bits (53), Expect = 2e-19
 Identities = 89/101 (88%)
 Strand = Plus / Minus

                                                                        
Query: 325  ctcctcacggtgatcctctgcctcttctcgcccatgtactcgttctgcgcaacgctgaca 384
            |||||||| ||||||||||||||||||||   ||||||||| ||||| |  |||||||| 
Sbjct: 9524 ctcctcacagtgatcctctgcctcttctcattcatgtactcattctgagttacgctgacg 9465

                                                     
Query: 385  cggaacaggtggggaacccaggtggcttccttcagcttgag 425
            ||||||||||| |||||||| || |||||||||||||||||
Sbjct: 9464 cggaacaggtgaggaacccaagtagcttccttcagcttgag 9424



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 50/54 (92%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                  
Query: 589  ttcttctggcacccttcacaccagtatcctgattccgagtgcctcggtcacctt 642
            |||||||||||||||||||||||||||||||| ||| | |||||| ||||||||
Sbjct: 8961 ttcttctggcacccttcacaccagtatcctga-tccaattgcctcagtcacctt 8909



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  121 bits (61), Expect = 3e-24
 Identities = 100/113 (88%)
 Strand = Plus / Minus

                                                                           
Query: 457     atccgatcaagattatctgcactgcagccgacaatcctctctgcttggtcattgaaaagg 516
               ||||||||||| | ||||||||||||||| |||||||||||||| || |||||||| || 
Sbjct: 5949860 atccgatcaagctcatctgcactgcagccaacaatcctctctgcctgatcattgaacaga 5949801

                                                                    
Query: 517     gacagccaggcctcacctgttggatcagagaccttgatcaccatgatgtacct 569
               || |||||||||||||| || || || ||||||||||| ||||||||||||||
Sbjct: 5949800 gaaagccaggcctcaccagtagggtcggagaccttgatgaccatgatgtacct 5949748



 Score =  105 bits (53), Expect = 2e-19
 Identities = 89/101 (88%)
 Strand = Plus / Minus

                                                                           
Query: 325     ctcctcacggtgatcctctgcctcttctcgcccatgtactcgttctgcgcaacgctgaca 384
               |||||||| ||||||||||||||||||||   ||||||||| ||||| |  |||||||| 
Sbjct: 5950202 ctcctcacagtgatcctctgcctcttctcattcatgtactcattctgagttacgctgacg 5950143

                                                        
Query: 385     cggaacaggtggggaacccaggtggcttccttcagcttgag 425
               ||||||||||| |||||||| || |||||||||||||||||
Sbjct: 5950142 cggaacaggtgaggaacccaagtagcttccttcagcttgag 5950102



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 50/54 (92%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                     
Query: 589     ttcttctggcacccttcacaccagtatcctgattccgagtgcctcggtcacctt 642
               |||||||||||||||||||||||||||||||| ||| | |||||| ||||||||
Sbjct: 5949639 ttcttctggcacccttcacaccagtatcctga-tccaattgcctcagtcacctt 5949587



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>gb|AY111108.1| Zea mays CL11267_1 mRNA sequence
          Length = 747

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 44/47 (93%)
 Strand = Plus / Plus

                                                          
Query: 376 acgctgacacggaacaggtggggaacccaggtggcttccttcagctt 422
           |||||||| ||||||||||| |||||||||||||||||||| |||||
Sbjct: 417 acgctgacgcggaacaggtgaggaacccaggtggcttccttgagctt 463



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>gb|AC141900.3| Mus musculus BAC clone RP23-47I1 from chromosome 12, complete sequence
          Length = 145868

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 509    tgaaaagggacagccaggcct 529
              |||||||||||||||||||||
Sbjct: 135099 tgaaaagggacagccaggcct 135079



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>gb|AC139238.5| Mus musculus BAC clone RP24-403G3 from chromosome 12, complete sequence
          Length = 170371

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 509   tgaaaagggacagccaggcct 529
             |||||||||||||||||||||
Sbjct: 13981 tgaaaagggacagccaggcct 13961



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>gb|AE017352.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 12, complete
              sequence
          Length = 906719

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 437    catcgccctcctcttttctg 456
              ||||||||||||||||||||
Sbjct: 436926 catcgccctcctcttttctg 436907



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>gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome
          Length = 1937111

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 232     gcattctcctcttgcatctt 251
               ||||||||||||||||||||
Sbjct: 1376383 gcattctcctcttgcatctt 1376364



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>ref|XM_658482.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5970.2), mRNA
          Length = 2070

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 405  ggtggcttccttcagcttga 424
            ||||||||||||||||||||
Sbjct: 2002 ggtggcttccttcagcttga 2021



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>ref|XM_568051.1| Cryptococcus neoformans var. neoformans JEC21 30s ribosomal protein
           s13 (CNL05120) partial mRNA
          Length = 623

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 437 catcgccctcctcttttctg 456
           ||||||||||||||||||||
Sbjct: 360 catcgccctcctcttttctg 341



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>gb|AC132125.3| Mus musculus BAC clone RP23-369L24 from chromosome 13, complete
             sequence
          Length = 101318

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 466   agattatctgcactgcagcc 485
             ||||||||||||||||||||
Sbjct: 12380 agattatctgcactgcagcc 12361



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>ref|XM_783299.1| PREDICTED: Strongylocentrotus purpuratus similar to CG4928-PB,
           isoform B (LOC583389), mRNA
          Length = 1464

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 83  agcagcaaacttgggccaaaacat 106
           ||||||| ||||||||||||||||
Sbjct: 199 agcagcagacttgggccaaaacat 222



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>emb|AL355136.19| Human DNA sequence from clone RP11-435P18 on chromosome 13, complete
             sequence
          Length = 200059

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   gcttcatctagcaaagctat 127
             ||||||||||||||||||||
Sbjct: 72592 gcttcatctagcaaagctat 72611



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>emb|AL139385.12| Human DNA sequence from clone RP11-90L1 on chromosome 13 Contains the 3'
              end of the COL4A2 gene for collagen type IV alpha 2, the
              RAB20 gene for a RAS oncogene family member, a novel gene
              (FLJ10769 FLJ25038 FLJ14198), the 5' end of a novel gene
              (FLJ12118) and three CpG islands, complete sequence
          Length = 177392

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 522    ccaggcctcacctgttggat 541
              ||||||||||||||||||||
Sbjct: 113380 ccaggcctcacctgttggat 113399



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>emb|BX572623.8| Human DNA sequence from clone XXyac-22CH10 on chromosome 1, complete
             sequence
          Length = 112168

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   ccagcagggggcggtgaact 207
             ||||||||||||||||||||
Sbjct: 35640 ccagcagggggcggtgaact 35621



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 281     caagctggtacctcgcttcagcag 304
               ||||||||| ||||||||||||||
Sbjct: 1345580 caagctggttcctcgcttcagcag 1345557



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>dbj|AP005311.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0482F12
          Length = 147735

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 281   caagctggtacctcgcttcagcag 304
             ||||||||| ||||||||||||||
Sbjct: 26852 caagctggttcctcgcttcagcag 26829



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>emb|BX640519.2| Human DNA sequence from clone RP11-157L8 on chromosome 1, complete
              sequence
          Length = 186829

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    ccagcagggggcggtgaact 207
              ||||||||||||||||||||
Sbjct: 185263 ccagcagggggcggtgaact 185244



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>gb|AC151530.2| Mus musculus BAC clone RP24-330K6 from 13, complete sequence
          Length = 155065

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 466    agattatctgcactgcagcc 485
              ||||||||||||||||||||
Sbjct: 100736 agattatctgcactgcagcc 100717



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>gb|AC161604.6| Mus musculus BAC clone RP23-245O13 from chromosome 3, complete sequence
          Length = 210802

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 246   catcttctagctggaggtga 265
             ||||||||||||||||||||
Sbjct: 84543 catcttctagctggaggtga 84524


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,857,411
Number of Sequences: 3902068
Number of extensions: 5857411
Number of successful extensions: 107544
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107392
Number of HSP's gapped (non-prelim): 146
length of query: 648
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 625
effective length of database: 17,143,297,704
effective search space: 10714561065000
effective search space used: 10714561065000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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