ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15p13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL112356.1|CNS01A18 Botrytis cinerea strain T4 cDNA library 48 0.011
2emb|AL356240.15| Human DNA sequence from clone RP5-873F21 on chr... 44 0.18
3gb|AC119801.14| Mus musculus, clone RP23-54N13, complete sequence 44 0.18
4gb|AC004779.1| Homo sapiens chromosome 16, cosmid clone 304A10 (... 42 0.69
5gb|AC005564.1| Homo sapiens chromosome 16, cosmid clone 420F6 (L... 42 0.69
6gb|AY679523.1| Homo sapiens cell division cycle 2-like 5 (cholin... 42 0.69
7emb|AL354712.18| Human DNA sequence from clone RP4-597A16 on chr... 42 0.69
8emb|AL133350.16| Human DNA sequence from clone RP11-155N8 on chr... 42 0.69
9gb|AC129803.3| Homo sapiens 3 BAC RP11-15N24 (Roswell Park Cance... 42 0.69
10gb|AC112212.2| Homo sapiens chromosome 3 clone RP11-185E15, comp... 42 0.69
11gb|AC078813.13| Homo sapiens 3q BAC RP11-149B11 (Roswell Park Ca... 42 0.69
12gb|AC099328.2| Homo sapiens chromosome 3 clone RP11-62G11, compl... 42 0.69
13gb|AC008771.4|AC008771 Homo sapiens chromosome 5 clone CTD-2015H... 42 0.69
14gb|AC018764.8| Homo sapiens chromosome 5 clone CTD-2327L5, compl... 42 0.69
15gb|AC007151.2|AC007151 Homo sapiens clone RPCI-11_95J11, complet... 42 0.69
16gb|AC006023.2|AC006023 Homo sapiens PAC clone RP5-1147A1 from 7p... 42 0.69
17emb|AJ315157.1|HSA315157 Homo sapiens t(8;16)(p11;p13) chimeric ... 42 0.69
18gb|AC125448.16| Mus musculus chromosome 10, clone RP23-122D10, c... 40 2.7
19gb|AC153564.6| Mus musculus 10 BAC RP23-39C23 (Roswell Park Canc... 40 2.7
20gb|AC073901.5| Homo sapiens BAC clone RP11-222O23 from 7, comple... 40 2.7
21emb|AL355338.33| Human DNA sequence from clone RP11-12G12 on chr... 40 2.7
22emb|AL691470.17| Mouse DNA sequence from clone RP23-160F12 on ch... 40 2.7
23emb|CR352324.11| Zebrafish DNA sequence from clone CH211-218L14 ... 40 2.7
24gb|AC007448.14| Homo sapiens chromosome 17, clone RP11-401F2, co... 40 2.7
25emb|AL445883.3|CNS07EEQ Human chromosome 14 DNA sequence BAC R-9... 40 2.7
26emb|AL355885.4|CNS05TCW Human chromosome 14 DNA sequence BAC R-4... 40 2.7
27gb|AC159815.3| Mus musculus BAC clone RP23-324H19 from chromosom... 40 2.7
28gb|AC155232.1| Mus musculus BAC clone RP24-374P12 from 12, compl... 40 2.7
29emb|AL663088.10| Mouse DNA sequence from clone RP23-293H17 on ch... 40 2.7
30gb|AC006534.10| Homo sapiens chromosome 17, clone RP11-557B23, c... 40 2.7

>emb|AL112356.1|CNS01A18 Botrytis cinerea strain T4 cDNA library
          Length = 660

 Score = 48.1 bits (24), Expect = 0.011
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 84  tgagtggagatttgaatttgccag 107
           ||||||||||||||||||||||||
Sbjct: 356 tgagtggagatttgaatttgccag 333



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>emb|AL356240.15| Human DNA sequence from clone RP5-873F21 on chromosome 11 Contains part
             of a novel gene for brain protein 239, ESTs and GSSs,
             complete sequence
          Length = 114144

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 78    ttcagttgagtggagatttgaatttg 103
             ||||||||| ||||||||||||||||
Sbjct: 98306 ttcagttgattggagatttgaatttg 98331



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>gb|AC119801.14| Mus musculus, clone RP23-54N13, complete sequence
          Length = 251756

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 113   cattgtagatataatcccagtgctta 138
             |||||||| |||||||||||||||||
Sbjct: 70840 cattgtagctataatcccagtgctta 70815



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>gb|AC004779.1| Homo sapiens chromosome 16, cosmid clone 304A10 (LANL), complete
             sequence
          Length = 35687

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 122   tataatcccagtgcttaggga 142
             |||||||||||||||||||||
Sbjct: 21322 tataatcccagtgcttaggga 21342



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>gb|AC005564.1| Homo sapiens chromosome 16, cosmid clone 420F6 (LANL), complete
             sequence
          Length = 37930

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 122   tataatcccagtgcttaggga 142
             |||||||||||||||||||||
Sbjct: 11608 tataatcccagtgcttaggga 11628



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>gb|AY679523.1| Homo sapiens cell division cycle 2-like 5 (cholinesterase-related cell
              division controller) (CDC2L5) gene, complete cds
          Length = 148952

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 122    tataatcccagtgcttaggga 142
              |||||||||||||||||||||
Sbjct: 138827 tataatcccagtgcttaggga 138807



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>emb|AL354712.18| Human DNA sequence from clone RP4-597A16 on chromosome 1p36.13-36.23
              Contains the 5' end of a novel leucine rich repeat domain
              containing protein, a novel gene, a pseudogene similar to
              part of WD repeat domain, the 5' end of the gene for lung
              type-I cell membrane-associated glycoprotein (T1A-2) and a
              CpG island, complete sequence
          Length = 123288

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 122    tataatcccagtgcttaggga 142
              |||||||||||||||||||||
Sbjct: 114834 tataatcccagtgcttaggga 114814



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>emb|AL133350.16| Human DNA sequence from clone RP11-155N8 on chromosome 10 Contains
            GSSs and STSs, complete sequence
          Length = 89833

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 124  taatcccagtgcttagggaag 144
            |||||||||||||||||||||
Sbjct: 3655 taatcccagtgcttagggaag 3675



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>gb|AC129803.3| Homo sapiens 3 BAC RP11-15N24 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 185721

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 122    tataatcccagtgcttaggga 142
              |||||||||||||||||||||
Sbjct: 106775 tataatcccagtgcttaggga 106795



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>gb|AC112212.2| Homo sapiens chromosome 3 clone RP11-185E15, complete sequence
          Length = 168752

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 122    tataatcccagtgcttaggga 142
              |||||||||||||||||||||
Sbjct: 154625 tataatcccagtgcttaggga 154605



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>gb|AC078813.13| Homo sapiens 3q BAC RP11-149B11 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 142000

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 122   tataatcccagtgcttaggga 142
             |||||||||||||||||||||
Sbjct: 83003 tataatcccagtgcttaggga 82983



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>gb|AC099328.2| Homo sapiens chromosome 3 clone RP11-62G11, complete sequence
          Length = 156066

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 122   tataatcccagtgcttaggga 142
             |||||||||||||||||||||
Sbjct: 58842 tataatcccagtgcttaggga 58822



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>gb|AC008771.4|AC008771 Homo sapiens chromosome 5 clone CTD-2015H6, complete sequence
          Length = 123169

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 124   taatcccagtgcttagggaag 144
             |||||||||||||||||||||
Sbjct: 77283 taatcccagtgcttagggaag 77263



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>gb|AC018764.8| Homo sapiens chromosome 5 clone CTD-2327L5, complete sequence
          Length = 126052

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 124    taatcccagtgcttagggaag 144
              |||||||||||||||||||||
Sbjct: 104277 taatcccagtgcttagggaag 104297



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>gb|AC007151.2|AC007151 Homo sapiens clone RPCI-11_95J11, complete sequence
          Length = 165196

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 122   tataatcccagtgcttaggga 142
             |||||||||||||||||||||
Sbjct: 65963 tataatcccagtgcttaggga 65943



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>gb|AC006023.2|AC006023 Homo sapiens PAC clone RP5-1147A1 from 7p14-p12, complete sequence
          Length = 157385

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 122   tataatcccagtgcttaggga 142
             |||||||||||||||||||||
Sbjct: 53346 tataatcccagtgcttaggga 53326



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>emb|AJ315157.1|HSA315157 Homo sapiens t(8;16)(p11;p13) chimeric CBP/MOZ genomic DNA from
           acute myeloid leukemia patient (case 4)
          Length = 419

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 122 tataatcccagtgcttaggga 142
           |||||||||||||||||||||
Sbjct: 44  tataatcccagtgcttaggga 64



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>gb|AC125448.16| Mus musculus chromosome 10, clone RP23-122D10, complete sequence
          Length = 188948

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 69     tagctgctattcagttgagt 88
              ||||||||||||||||||||
Sbjct: 183841 tagctgctattcagttgagt 183860



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>gb|AC153564.6| Mus musculus 10 BAC RP23-39C23 (Roswell Park Cancer Institute
            (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 241022

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 69   tagctgctattcagttgagt 88
            ||||||||||||||||||||
Sbjct: 5488 tagctgctattcagttgagt 5507



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>gb|AC073901.5| Homo sapiens BAC clone RP11-222O23 from 7, complete sequence
          Length = 170654

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 124    taatcccagtgcttagggaagtgt 147
              |||||||||||||| |||||||||
Sbjct: 129036 taatcccagtgctttgggaagtgt 129013



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>emb|AL355338.33| Human DNA sequence from clone RP11-12G12 on chromosome 13 Contains the
             gene for zinc finger protein of the cerebellum 5 (ZIC5),
             the ZIC2 gene for Zic family member 2 (odd-paired homolog
             Drosophila), a 13kDa differentiation-associated protein
             (DAP13) pseudogene, an asparagine synthetase (ASNS)
             pseudogene, the 5' end of the PCCA gene for propionyl
             Coenzyme A carboxylase alpha polypeptide and seven CpG
             islands, complete sequence
          Length = 153762

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 121   atataatcccagtgcttagggaag 144
             ||||||||||||||||| ||||||
Sbjct: 90136 atataatcccagtgctttgggaag 90159



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>emb|AL691470.17| Mouse DNA sequence from clone RP23-160F12 on chromosome 11 Contains the
              3' end of gene FLJ13305, a novel gene, a novel gene
              (1700061J23Rik) and a CpG island, complete sequence
          Length = 195614

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 122    tataatcccagtgcttaggg 141
              ||||||||||||||||||||
Sbjct: 108099 tataatcccagtgcttaggg 108118



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>emb|CR352324.11| Zebrafish DNA sequence from clone CH211-218L14 in linkage group 12,
             complete sequence
          Length = 206894

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 70    agctgctattcagttgagtggaga 93
             |||||| |||||||||||||||||
Sbjct: 30227 agctgccattcagttgagtggaga 30204



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>gb|AC007448.14| Homo sapiens chromosome 17, clone RP11-401F2, complete sequence
          Length = 195558

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 122   tataatcccagtgcttagggaagt 145
             |||||||||||||||| |||||||
Sbjct: 67044 tataatcccagtgctttgggaagt 67067



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>emb|AL445883.3|CNS07EEQ Human chromosome 14 DNA sequence BAC R-908D14 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 169496

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 122   tataatcccagtgcttagggaagt 145
             |||||||||||||||| |||||||
Sbjct: 62229 tataatcccagtgctttgggaagt 62206



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>emb|AL355885.4|CNS05TCW Human chromosome 14 DNA sequence BAC R-434O22 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 174442

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 122   tataatcccagtgcttagggaagt 145
             |||||||||||||||| |||||||
Sbjct: 19952 tataatcccagtgctttgggaagt 19975



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>gb|AC159815.3| Mus musculus BAC clone RP23-324H19 from chromosome 12, complete sequence
          Length = 213030

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 122    tataatcccagtgcttaggg 141
              ||||||||||||||||||||
Sbjct: 177842 tataatcccagtgcttaggg 177861



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>gb|AC155232.1| Mus musculus BAC clone RP24-374P12 from 12, complete sequence
          Length = 139740

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    tataatcccagtgcttaggg 141
              ||||||||||||||||||||
Sbjct: 115804 tataatcccagtgcttaggg 115785



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>emb|AL663088.10| Mouse DNA sequence from clone RP23-293H17 on chromosome 11, complete
             sequence
          Length = 243290

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   atataatcccagtgcttagg 140
             ||||||||||||||||||||
Sbjct: 26890 atataatcccagtgcttagg 26871



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>gb|AC006534.10| Homo sapiens chromosome 17, clone RP11-557B23, complete sequence
          Length = 216789

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 123    ataatcccagtgcttagggaagtg 146
              ||||||||||||||| ||||||||
Sbjct: 126100 ataatcccagtgctttgggaagtg 126077


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,481,502
Number of Sequences: 3902068
Number of extensions: 1481502
Number of successful extensions: 96906
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96834
Number of HSP's gapped (non-prelim): 72
length of query: 216
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 194
effective length of database: 17,147,199,772
effective search space: 3326556755768
effective search space used: 3326556755768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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