| Clone Name | rbags15p12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK101382.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033036E19, full insert sequence Length = 1800 Score = 264 bits (133), Expect = 4e-67 Identities = 335/401 (83%), Gaps = 1/401 (0%) Strand = Plus / Minus Query: 281 agctgtttaccaagaaggaatgtgtcgatcagcgctgtcccttctgcgggcttgttgagg 340 ||||||||||||||||| |||||||| ||||| | ||||||| | || || || ||| Sbjct: 1504 agctgtttaccaagaagaaatgtgtcaatcagagtgagcccttcttcaggtttattaagg 1445 Query: 341 ggtaccaagtggccagcccctcttattgtcaccatggtcataccatggtactccacaaat 400 |||||||| || ||||| ||||| || |||||||||||||| |||| ||||||||||||| Sbjct: 1444 ggtaccaaatgtccagcacctctaatcgtcaccatggtcatgccatcgtactccacaaat 1385 Query: 401 cttccagcaacctgtttgtccaggtaccatggttgccactgtgacttgataggcaagcca 460 ||||| ||||||||| ||| ||||||||| |||||||| | ||||||| ||| ||| Sbjct: 1384 cttcctgcaacctgtctgttcaggtaccaaggttgccagtccctcttgatatgcagccca 1325 Query: 461 agtgcttccacacaataccgtgacccgatcactgggaccctgccatctgcatctccactg 520 || |||||||| || |||| ||||||||||||||||||||| || || |||||||||||| Sbjct: 1324 agcgcttccacgcagtaccttgacccgatcactgggaccctaccgtcggcatctccactg 1265 Query: 521 tagagccagactctcagtcctgctttgatgagcttggagtatattggtagaatgggaaag 580 |||||||| | ||| |||||||||||||||||||| || || ||||| | | ||||| Sbjct: 1264 tagagccaaattctgagtcctgctttgatgagcttcgaatagattggca-agacagaaag 1206 Query: 581 tacggaaaagttgtacgacttcagaatggagtcactgcaaacttgccatttcccaggcaa 640 || ||||||||||| ||| | |||||||||||||||||||| | |||||| ||||| | Sbjct: 1205 caccgaaaagttgtatgaccttagaatggagtcactgcaaaccttccattttccagggag 1146 Query: 641 catcccattgacatttgcatgaagtgctctctgcacatctg 681 ||||||||| |||||||||| | |||| ||||||| |||| Sbjct: 1145 catcccatttgcatttgcatggaatgctttctgcacgtctg 1105
>dbj|AK106800.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-B10, full insert sequence Length = 1822 Score = 198 bits (100), Expect = 2e-47 Identities = 263/316 (83%), Gaps = 1/316 (0%) Strand = Plus / Minus Query: 319 cccttctgcgggcttgttgaggggtaccaagtggccagcccctcttattgtcaccatggt 378 |||||| || || ||||||||||| |||| ||| || |||||||| | |||||||| || Sbjct: 1561 cccttcagcaggtttgttgaggggaaccaggtgacctgcccctctgacagtcaccattgt 1502 Query: 379 cataccatggtactccacaaatcttccagcaacctgtttgtccaggtaccatggttgcca 438 ||| ||||||||||||||||| || ||||||||||| ||||| |||||||| | |||||| Sbjct: 1501 cattccatggtactccacaaacctcccagcaacctgcttgtcaaggtaccaagattgcca 1442 Query: 439 ctgtgacttgataggcaagccaagtgcttccacacaataccgtgacccgatcactgggac 498 | | |||||| || | ||| ||||||||||| || ||||| || | ||| || ||||| Sbjct: 1441 atcggtcttgatcggtaggccgagtgcttccacgcagtaccgagaactgataaccgggac 1382 Query: 499 cctgccatctgcatctccactgtagagccagactctcagtcctgctttgatgagcttgga 558 |||||| || ||||| || ||||||||||| |||||||| |||||||||||||||||||| Sbjct: 1381 cctgccgtcagcatcaccgctgtagagccaaactctcagccctgctttgatgagcttgga 1322 Query: 559 gtatattggtagaatgggaaagtacggaaaagttgtacgacttcagaatggagtcactgc 618 |||||| ||||| || ||||||||| || || ||||| || || || || |||||||| Sbjct: 1321 gtatataggtaggat-ggaaagtactgagaaattgtaagagttgaggatttggtcactgc 1263 Query: 619 aaacttgccatttccc 634 |||||||||| ||||| Sbjct: 1262 aaacttgccacttccc 1247
>ref|XM_475620.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1524 Score = 109 bits (55), Expect = 1e-20 Identities = 160/195 (82%) Strand = Plus / Minus Query: 319 cccttctgcgggcttgttgaggggtaccaagtggccagcccctcttattgtcaccatggt 378 |||||| || || ||||||||||| |||| ||| || |||||||| | |||||||| || Sbjct: 1470 cccttcagcaggtttgttgaggggaaccaggtgacctgcccctctgacagtcaccattgt 1411 Query: 379 cataccatggtactccacaaatcttccagcaacctgtttgtccaggtaccatggttgcca 438 ||| ||||||||||||||||| || ||||||||||| ||||| |||||||| | |||||| Sbjct: 1410 cattccatggtactccacaaacctcccagcaacctgcttgtcaaggtaccaagattgcca 1351 Query: 439 ctgtgacttgataggcaagccaagtgcttccacacaataccgtgacccgatcactgggac 498 | | |||||| || | ||| ||||||||||| || ||||| || | ||| || ||||| Sbjct: 1350 atcggtcttgatcggtaggccgagtgcttccacgcagtaccgagaactgataaccgggac 1291 Query: 499 cctgccatctgcatc 513 |||||| || ||||| Sbjct: 1290 cctgccgtcagcatc 1276 Score = 99.6 bits (50), Expect = 1e-17 Identities = 102/118 (86%), Gaps = 1/118 (0%) Strand = Plus / Minus Query: 517 actgtagagccagactctcagtcctgctttgatgagcttggagtatattggtagaatggg 576 |||||||||||| |||||||| |||||||||||||||||||||||||| ||||| || || Sbjct: 1197 actgtagagccaaactctcagccctgctttgatgagcttggagtatataggtaggat-gg 1139 Query: 577 aaagtacggaaaagttgtacgacttcagaatggagtcactgcaaacttgccatttccc 634 ||||||| || || ||||| || || || || |||||||||||||||||| ||||| Sbjct: 1138 aaagtactgagaaattgtaagagttgaggatttggtcactgcaaacttgccacttccc 1081
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 105 bits (53), Expect = 2e-19 Identities = 113/133 (84%) Strand = Plus / Minus Query: 281 agctgtttaccaagaaggaatgtgtcgatcagcgctgtcccttctgcgggcttgttgagg 340 ||||||||||||||||| |||||||| ||||| | ||||||| | || || || ||| Sbjct: 12897963 agctgtttaccaagaagaaatgtgtcaatcagagtgagcccttcttcaggtttattaagg 12897904 Query: 341 ggtaccaagtggccagcccctcttattgtcaccatggtcataccatggtactccacaaat 400 |||||||| || ||||| ||||| || |||||||||||||| |||| ||||||||||||| Sbjct: 12897903 ggtaccaaatgtccagcacctctaatcgtcaccatggtcatgccatcgtactccacaaat 12897844 Query: 401 cttccagcaacct 413 ||||| ||||||| Sbjct: 12897843 cttcctgcaacct 12897831 Score = 77.8 bits (39), Expect = 4e-11 Identities = 96/115 (83%) Strand = Plus / Plus Query: 408 caacctgtttgtccaggtaccatggttgccactgtgacttgataggcaagccaagtgctt 467 ||||||| |||| |||||||||||||||||||||||||| | ||| | |||||| |||| Sbjct: 12898777 caacctgattgtttaggtaccatggttgccactgtgacttaacaggaaggccaagggctt 12898836 Query: 468 ccacacaataccgtgacccgatcactgggaccctgccatctgcatctccactgta 522 | || || ||||| || || || ||||| ||||||||||| | ||||||||||| Sbjct: 12898837 ctacgcagtaccgggatccaataactggaaccctgccatccacgtctccactgta 12898891 Score = 75.8 bits (38), Expect = 2e-10 Identities = 92/110 (83%) Strand = Plus / Minus Query: 410 acctgtttgtccaggtaccatggttgccactgtgacttgataggcaagccaagtgcttcc 469 |||||| ||| ||||||||| |||||||| | ||||||| ||| ||||| |||||| Sbjct: 12897692 acctgtctgttcaggtaccaaggttgccagtccctcttgatatgcagcccaagcgcttcc 12897633 Query: 470 acacaataccgtgacccgatcactgggaccctgccatctgcatctccact 519 || || |||| ||||||||||||||||||||| || || ||||||||||| Sbjct: 12897632 acgcagtaccttgacccgatcactgggaccctaccgtcggcatctccact 12897583 Score = 60.0 bits (30), Expect = 1e-05 Identities = 85/102 (83%), Gaps = 1/102 (0%) Strand = Plus / Minus Query: 518 ctgtagagccagactctcagtcctgctttgatgagcttggagtatattggtagaatggga 577 ||||||||||| | ||| |||||||||||||||||||| || || ||||| | | || Sbjct: 12897363 ctgtagagccaaattctgagtcctgctttgatgagcttcgaatagattggca-agacaga 12897305 Query: 578 aagtacggaaaagttgtacgacttcagaatggagtcactgca 619 ||| || ||||||||||| ||| | ||||||||||||||||| Sbjct: 12897304 aagcaccgaaaagttgtatgaccttagaatggagtcactgca 12897263
>dbj|AP003537.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1140D12 Length = 139301 Score = 105 bits (53), Expect = 2e-19 Identities = 113/133 (84%) Strand = Plus / Minus Query: 281 agctgtttaccaagaaggaatgtgtcgatcagcgctgtcccttctgcgggcttgttgagg 340 ||||||||||||||||| |||||||| ||||| | ||||||| | || || || ||| Sbjct: 49404 agctgtttaccaagaagaaatgtgtcaatcagagtgagcccttcttcaggtttattaagg 49345 Query: 341 ggtaccaagtggccagcccctcttattgtcaccatggtcataccatggtactccacaaat 400 |||||||| || ||||| ||||| || |||||||||||||| |||| ||||||||||||| Sbjct: 49344 ggtaccaaatgtccagcacctctaatcgtcaccatggtcatgccatcgtactccacaaat 49285 Query: 401 cttccagcaacct 413 ||||| ||||||| Sbjct: 49284 cttcctgcaacct 49272 Score = 77.8 bits (39), Expect = 4e-11 Identities = 96/115 (83%) Strand = Plus / Plus Query: 408 caacctgtttgtccaggtaccatggttgccactgtgacttgataggcaagccaagtgctt 467 ||||||| |||| |||||||||||||||||||||||||| | ||| | |||||| |||| Sbjct: 50218 caacctgattgtttaggtaccatggttgccactgtgacttaacaggaaggccaagggctt 50277 Query: 468 ccacacaataccgtgacccgatcactgggaccctgccatctgcatctccactgta 522 | || || ||||| || || || ||||| ||||||||||| | ||||||||||| Sbjct: 50278 ctacgcagtaccgggatccaataactggaaccctgccatccacgtctccactgta 50332 Score = 75.8 bits (38), Expect = 2e-10 Identities = 92/110 (83%) Strand = Plus / Minus Query: 410 acctgtttgtccaggtaccatggttgccactgtgacttgataggcaagccaagtgcttcc 469 |||||| ||| ||||||||| |||||||| | ||||||| ||| ||||| |||||| Sbjct: 49133 acctgtctgttcaggtaccaaggttgccagtccctcttgatatgcagcccaagcgcttcc 49074 Query: 470 acacaataccgtgacccgatcactgggaccctgccatctgcatctccact 519 || || |||| ||||||||||||||||||||| || || ||||||||||| Sbjct: 49073 acgcagtaccttgacccgatcactgggaccctaccgtcggcatctccact 49024 Score = 60.0 bits (30), Expect = 1e-05 Identities = 85/102 (83%), Gaps = 1/102 (0%) Strand = Plus / Minus Query: 518 ctgtagagccagactctcagtcctgctttgatgagcttggagtatattggtagaatggga 577 ||||||||||| | ||| |||||||||||||||||||| || || ||||| | | || Sbjct: 48804 ctgtagagccaaattctgagtcctgctttgatgagcttcgaatagattggca-agacaga 48746 Query: 578 aagtacggaaaagttgtacgacttcagaatggagtcactgca 619 ||| || ||||||||||| ||| | ||||||||||||||||| Sbjct: 48745 aagcaccgaaaagttgtatgaccttagaatggagtcactgca 48704
>dbj|AK067493.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111L08, full insert sequence Length = 1760 Score = 103 bits (52), Expect = 8e-19 Identities = 115/136 (84%) Strand = Plus / Minus Query: 389 tactccacaaatcttccagcaacctgtttgtccaggtaccatggttgccactgtgacttg 448 ||||| |||||||| ||||||||||| |||| |||||||||||||||||||||||||| Sbjct: 1424 tactcaacaaatctcccagcaacctgattgtttaggtaccatggttgccactgtgactta 1365 Query: 449 ataggcaagccaagtgcttccacacaataccgtgacccgatcactgggaccctgccatct 508 | ||| | |||||| ||||| || || ||||| || || || ||||| ||||||||||| Sbjct: 1364 acaggaaggccaagggcttctacgcagtaccgggatccaataactggaaccctgccatcc 1305 Query: 509 gcatctccactgtaga 524 | ||||||||||||| Sbjct: 1304 acgtctccactgtaga 1289
>dbj|AK061997.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-C12, full insert sequence Length = 1682 Score = 103 bits (52), Expect = 8e-19 Identities = 115/136 (84%) Strand = Plus / Minus Query: 389 tactccacaaatcttccagcaacctgtttgtccaggtaccatggttgccactgtgacttg 448 ||||| |||||||| ||||||||||| |||| |||||||||||||||||||||||||| Sbjct: 1256 tactcaacaaatctcccagcaacctgattgtttaggtaccatggttgccactgtgactta 1197 Query: 449 ataggcaagccaagtgcttccacacaataccgtgacccgatcactgggaccctgccatct 508 | ||| | |||||| ||||| || || ||||| || || || ||||| ||||||||||| Sbjct: 1196 acaggaaggccaagggcttctacgcagtaccgggatccaataactggaaccctgccatcc 1137 Query: 509 gcatctccactgtaga 524 | ||||||||||||| Sbjct: 1136 acgtctccactgtaga 1121
>gb|AC119288.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017J22, complete sequence Length = 177153 Score = 83.8 bits (42), Expect = 7e-13 Identities = 54/58 (93%) Strand = Plus / Plus Query: 518 ctgtagagccagactctcagtcctgctttgatgagcttggagtatattggtagaatgg 575 ||||||||||| |||||||| |||||||||||||||||||||||||| ||||| |||| Sbjct: 9172 ctgtagagccaaactctcagccctgctttgatgagcttggagtatataggtaggatgg 9229 Score = 79.8 bits (40), Expect = 1e-11 Identities = 82/96 (85%) Strand = Plus / Plus Query: 319 cccttctgcgggcttgttgaggggtaccaagtggccagcccctcttattgtcaccatggt 378 |||||| || || ||||||||||| |||| ||| || |||||||| | |||||||| || Sbjct: 8652 cccttcagcaggtttgttgaggggaaccaggtgacctgcccctctgacagtcaccattgt 8711 Query: 379 cataccatggtactccacaaatcttccagcaacctg 414 ||| ||||||||||||||||| || ||||||||||| Sbjct: 8712 cattccatggtactccacaaacctcccagcaacctg 8747 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 524 agccagactctcagtcctgctttgatgagcttgga 558 ||||| |||||||| |||||||||||||||||||| Sbjct: 7906 agccaaactctcagccctgctttgatgagcttgga 7940 Score = 40.1 bits (20), Expect = 9.7 Identities = 83/104 (79%) Strand = Plus / Plus Query: 410 acctgtttgtccaggtaccatggttgccactgtgacttgataggcaagccaagtgcttcc 469 ||||| ||||| |||||||| | |||||| | | |||||| || | ||| ||||||||| Sbjct: 8837 acctgcttgtcaaggtaccaagattgccaatcggtcttgatcggtaggccgagtgcttcc 8896 Query: 470 acacaataccgtgacccgatcactgggaccctgccatctgcatc 513 || || ||||| || | ||| || ||||||||||| || ||||| Sbjct: 8897 acgcagtaccgagaactgataaccgggaccctgccgtcagcatc 8940
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 83.8 bits (42), Expect = 7e-13 Identities = 54/58 (93%) Strand = Plus / Plus Query: 518 ctgtagagccagactctcagtcctgctttgatgagcttggagtatattggtagaatgg 575 ||||||||||| |||||||| |||||||||||||||||||||||||| ||||| |||| Sbjct: 3379690 ctgtagagccaaactctcagccctgctttgatgagcttggagtatataggtaggatgg 3379747 Score = 79.8 bits (40), Expect = 1e-11 Identities = 82/96 (85%) Strand = Plus / Plus Query: 319 cccttctgcgggcttgttgaggggtaccaagtggccagcccctcttattgtcaccatggt 378 |||||| || || ||||||||||| |||| ||| || |||||||| | |||||||| || Sbjct: 3379170 cccttcagcaggtttgttgaggggaaccaggtgacctgcccctctgacagtcaccattgt 3379229 Query: 379 cataccatggtactccacaaatcttccagcaacctg 414 ||| ||||||||||||||||| || ||||||||||| Sbjct: 3379230 cattccatggtactccacaaacctcccagcaacctg 3379265 Score = 56.0 bits (28), Expect = 2e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 519 tgtagagccagactctcagtcctgctttgatgagcttgga 558 |||||||||| ||||| || |||||||||||||||||||| Sbjct: 3313901 tgtagagccaaactctgagccctgctttgatgagcttgga 3313940 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 524 agccagactctcagtcctgctttgatgagcttgga 558 ||||| |||||||| |||||||||||||||||||| Sbjct: 3378424 agccaaactctcagccctgctttgatgagcttgga 3378458 Score = 40.1 bits (20), Expect = 9.7 Identities = 83/104 (79%) Strand = Plus / Plus Query: 410 acctgtttgtccaggtaccatggttgccactgtgacttgataggcaagccaagtgcttcc 469 ||||| ||||| |||||||| | |||||| | | |||||| || | ||| ||||||||| Sbjct: 3379355 acctgcttgtcaaggtaccaagattgccaatcggtcttgatcggtaggccgagtgcttcc 3379414 Query: 470 acacaataccgtgacccgatcactgggaccctgccatctgcatc 513 || || ||||| || | ||| || ||||||||||| || ||||| Sbjct: 3379415 acgcagtaccgagaactgataaccgggaccctgccgtcagcatc 3379458 Score = 40.1 bits (20), Expect = 9.7 Identities = 38/44 (86%) Strand = Plus / Plus Query: 532 tctcagtcctgctttgatgagcttggagtatattggtagaatgg 575 |||||| |||||| ||||||||||||| ||| | ||||| |||| Sbjct: 3368211 tctcagccctgctctgatgagcttggaatatgtaggtaggatgg 3368254
>ref|NM_183880.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1380 Score = 79.8 bits (40), Expect = 1e-11 Identities = 70/80 (87%) Strand = Plus / Minus Query: 389 tactccacaaatcttccagcaacctgtttgtccaggtaccatggttgccactgtgacttg 448 ||||| |||||||| ||||||||||| |||| |||||||||||||||||||||||||| Sbjct: 1250 tactcaacaaatctcccagcaacctgattgtttaggtaccatggttgccactgtgactta 1191 Query: 449 ataggcaagccaagtgcttc 468 | ||| | |||||| ||||| Sbjct: 1190 acaggaaggccaagggcttc 1171
>gb|AC087425.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0676G05, complete sequence Length = 167317 Score = 56.0 bits (28), Expect = 2e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 519 tgtagagccagactctcagtcctgctttgatgagcttgga 558 |||||||||| ||||| || |||||||||||||||||||| Sbjct: 107725 tgtagagccaaactctgagccctgctttgatgagcttgga 107764 Score = 40.1 bits (20), Expect = 9.7 Identities = 38/44 (86%) Strand = Plus / Plus Query: 532 tctcagtcctgctttgatgagcttggagtatattggtagaatgg 575 |||||| |||||| ||||||||||||| ||| | ||||| |||| Sbjct: 162035 tctcagccctgctctgatgagcttggaatatgtaggtaggatgg 162078
>ref|XM_475619.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1440 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 524 agccagactctcagtcctgctttgatgagcttgga 558 ||||| |||||||| |||||||||||||||||||| Sbjct: 1382 agccaaactctcagccctgctttgatgagcttgga 1416
>dbj|AP006434.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT36O22, TM0333b, complete sequence Length = 74925 Score = 54.0 bits (27), Expect = 6e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 442 tgacttgataggcaagccaagtgcttccacacaataccgtgacccgatcactgggaccct 501 |||||| | |||||| ||||| || || || || || |||| ||| |||||||| || || Sbjct: 44956 tgacttaagaggcaatccaagagcctcaacgcagtatcgtgtccctatcactggtactct 45015 Query: 502 gccatctgcatctccactg 520 ||||||||||||||||||| Sbjct: 45016 gccatctgcatctccactg 45034
>emb|AL591485.7| Human DNA sequence from clone RP11-293C4 on chromosome 6, complete sequence Length = 178428 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 57 atcaatgaaaaatataccaag 77 ||||||||||||||||||||| Sbjct: 26765 atcaatgaaaaatataccaag 26745
>gb|AC154693.2| Mus musculus BAC clone RP24-340P22 from chromosome 14, complete sequence Length = 182996 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 276 taggaagctgtttaccaagaaggaa 300 |||||||||||| |||||||||||| Sbjct: 50157 taggaagctgttaaccaagaaggaa 50133
>emb|X72788.1|SCTSL1 S.cerevisiae TSL1 gene for trehalose synthase long chain 1 Length = 5980 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 atcccatctttgaagaaacca 175 ||||||||||||||||||||| Sbjct: 888 atcccatctttgaagaaacca 908
>gb|DQ333062.1| Synthetic construct Saccharomyces cerevisiae clone FLH113228.01X CAC2 gene, complete sequence Length = 1407 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 atcccatctttgaagaaacca 175 ||||||||||||||||||||| Sbjct: 937 atcccatctttgaagaaacca 957
>emb|X80835.1|SC9514 S.cerevisiae chromosome XIII cosmid 9514 Length = 13841 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 atcccatctttgaagaaacca 175 ||||||||||||||||||||| Sbjct: 8937 atcccatctttgaagaaacca 8957
>gb|AC145782.1| Pan troglodytes BAC clone CH251-481A23 from Y, complete sequence Length = 184214 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 649 tgacatttgcatgaagtgct 668 |||||||||||||||||||| Sbjct: 125443 tgacatttgcatgaagtgct 125462
>emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207F1 complete genome Length = 124321 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 643 tcccattgacatttgcatga 662 |||||||||||||||||||| Sbjct: 14378 tcccattgacatttgcatga 14397
>emb|BX927375.6| Zebrafish DNA sequence from clone CH211-258B24 in linkage group 1, complete sequence Length = 53738 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 669 ctctgcacatctgccttatttgaa 692 |||| ||||||||||||||||||| Sbjct: 37959 ctcttcacatctgccttatttgaa 37982
>dbj|BS000608.1| Pan troglodytes chromosome Y clone:PTB-131K23, complete sequences Length = 194068 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 649 tgacatttgcatgaagtgct 668 |||||||||||||||||||| Sbjct: 163324 tgacatttgcatgaagtgct 163343
>dbj|BS000602.1| Pan troglodytes chromosome Y clone:PTB-547B05, complete sequences Length = 211728 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 649 tgacatttgcatgaagtgct 668 |||||||||||||||||||| Sbjct: 58529 tgacatttgcatgaagtgct 58548
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 649 tgacatttgcatgaagtgct 668 |||||||||||||||||||| Sbjct: 750435 tgacatttgcatgaagtgct 750454
>gb|AC096631.2| Homo sapiens chromosome 1 clone RP11-16L9, complete sequence Length = 159322 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 545 ttgatgagcttggagtatat 564 |||||||||||||||||||| Sbjct: 97077 ttgatgagcttggagtatat 97058
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 643 tcccattgacatttgcatga 662 |||||||||||||||||||| Sbjct: 35349679 tcccattgacatttgcatga 35349660
>gb|AC010902.4|AC010902 Homo sapiens clone RP11-549J7, complete sequence Length = 114169 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 649 tgacatttgcatgaagtgct 668 |||||||||||||||||||| Sbjct: 67523 tgacatttgcatgaagtgct 67542
>gb|AC147670.4| Pan troglodytes BAC clone CH251-94F1 from chromosome y, complete sequence Length = 172123 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 649 tgacatttgcatgaagtgct 668 |||||||||||||||||||| Sbjct: 27127 tgacatttgcatgaagtgct 27146
>gb|AC140263.3| Mus musculus BAC clone RP24-299F13 from chromosome 17, complete sequence Length = 158695 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 caggtaccatggttgccact 440 |||||||||||||||||||| Sbjct: 64458 caggtaccatggttgccact 64439 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 caggtaccatggttgccact 440 |||||||||||||||||||| Sbjct: 61609 caggtaccatggttgccact 61590 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 caggtaccatggttgccact 440 |||||||||||||||||||| Sbjct: 58763 caggtaccatggttgccact 58744
>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24, complete sequence Length = 173770 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 643 tcccattgacatttgcatga 662 |||||||||||||||||||| Sbjct: 145524 tcccattgacatttgcatga 145505
>dbj|AP006119.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT45C16, TM0203, complete sequence Length = 110764 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 atcaatgaaaaatataccaa 76 |||||||||||||||||||| Sbjct: 65954 atcaatgaaaaatataccaa 65973 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,784,475 Number of Sequences: 3902068 Number of extensions: 5784475 Number of successful extensions: 102479 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 102333 Number of HSP's gapped (non-prelim): 140 length of query: 707 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 684 effective length of database: 17,143,297,704 effective search space: 11726015629536 effective search space used: 11726015629536 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)