ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15p12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK101382.1| Oryza sativa (japonica cultivar-group) cDNA clon... 264 4e-67
2dbj|AK106800.1| Oryza sativa (japonica cultivar-group) cDNA clon... 198 2e-47
3ref|XM_475620.1| Oryza sativa (japonica cultivar-group), predic... 109 1e-20
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 105 2e-19
5dbj|AP003537.3| Oryza sativa (japonica cultivar-group) genomic D... 105 2e-19
6dbj|AK067493.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 8e-19
7dbj|AK061997.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 8e-19
8gb|AC119288.4| Oryza sativa (japonica cultivar-group) chromosome... 84 7e-13
9dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 84 7e-13
10ref|NM_183880.1| Oryza sativa (japonica cultivar-group), predic... 80 1e-11
11gb|AC087425.2| Oryza sativa (japonica cultivar-group) chromosome... 56 2e-04
12ref|XM_475619.1| Oryza sativa (japonica cultivar-group), predic... 54 6e-04
13dbj|AP006434.1| Lotus japonicus genomic DNA, chromosome 4, clone... 54 6e-04
14emb|AL591485.7| Human DNA sequence from clone RP11-293C4 on chro... 42 2.4
15gb|AC154693.2| Mus musculus BAC clone RP24-340P22 from chromosom... 42 2.4
16emb|X72788.1|SCTSL1 S.cerevisiae TSL1 gene for trehalose synthas... 42 2.4
17gb|DQ333062.1| Synthetic construct Saccharomyces cerevisiae clon... 42 2.4
18emb|X80835.1|SC9514 S.cerevisiae chromosome XIII cosmid 9514 42 2.4
19gb|AC145782.1| Pan troglodytes BAC clone CH251-481A23 from Y, co... 40 9.7
20emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207... 40 9.7
21emb|BX927375.6| Zebrafish DNA sequence from clone CH211-258B24 i... 40 9.7
22dbj|BS000608.1| Pan troglodytes chromosome Y clone:PTB-131K23, c... 40 9.7
23dbj|BS000602.1| Pan troglodytes chromosome Y clone:PTB-547B05, c... 40 9.7
24gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 9.7
25gb|AC096631.2| Homo sapiens chromosome 1 clone RP11-16L9, comple... 40 9.7
26dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.7
27gb|AC010902.4|AC010902 Homo sapiens clone RP11-549J7, complete s... 40 9.7
28gb|AC147670.4| Pan troglodytes BAC clone CH251-94F1 from chromos... 40 9.7
29gb|AC140263.3| Mus musculus BAC clone RP24-299F13 from chromosom... 40 9.7
30emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4,... 40 9.7
31dbj|AP006119.1| Lotus japonicus genomic DNA, chromosome 3, clone... 40 9.7

>dbj|AK101382.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033036E19, full
            insert sequence
          Length = 1800

 Score =  264 bits (133), Expect = 4e-67
 Identities = 335/401 (83%), Gaps = 1/401 (0%)
 Strand = Plus / Minus

                                                                        
Query: 281  agctgtttaccaagaaggaatgtgtcgatcagcgctgtcccttctgcgggcttgttgagg 340
            ||||||||||||||||| |||||||| ||||| |    ||||||| | || || || |||
Sbjct: 1504 agctgtttaccaagaagaaatgtgtcaatcagagtgagcccttcttcaggtttattaagg 1445

                                                                        
Query: 341  ggtaccaagtggccagcccctcttattgtcaccatggtcataccatggtactccacaaat 400
            |||||||| || ||||| ||||| || |||||||||||||| |||| |||||||||||||
Sbjct: 1444 ggtaccaaatgtccagcacctctaatcgtcaccatggtcatgccatcgtactccacaaat 1385

                                                                        
Query: 401  cttccagcaacctgtttgtccaggtaccatggttgccactgtgacttgataggcaagcca 460
            ||||| ||||||||| ||| ||||||||| |||||||| |    ||||||| |||  |||
Sbjct: 1384 cttcctgcaacctgtctgttcaggtaccaaggttgccagtccctcttgatatgcagccca 1325

                                                                        
Query: 461  agtgcttccacacaataccgtgacccgatcactgggaccctgccatctgcatctccactg 520
            || |||||||| || |||| ||||||||||||||||||||| || || ||||||||||||
Sbjct: 1324 agcgcttccacgcagtaccttgacccgatcactgggaccctaccgtcggcatctccactg 1265

                                                                        
Query: 521  tagagccagactctcagtcctgctttgatgagcttggagtatattggtagaatgggaaag 580
            |||||||| | ||| |||||||||||||||||||| || || ||||| | |    |||||
Sbjct: 1264 tagagccaaattctgagtcctgctttgatgagcttcgaatagattggca-agacagaaag 1206

                                                                        
Query: 581  tacggaaaagttgtacgacttcagaatggagtcactgcaaacttgccatttcccaggcaa 640
             || ||||||||||| ||| | |||||||||||||||||||| | |||||| ||||| | 
Sbjct: 1205 caccgaaaagttgtatgaccttagaatggagtcactgcaaaccttccattttccagggag 1146

                                                     
Query: 641  catcccattgacatttgcatgaagtgctctctgcacatctg 681
            |||||||||  |||||||||| | |||| ||||||| ||||
Sbjct: 1145 catcccatttgcatttgcatggaatgctttctgcacgtctg 1105



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>dbj|AK106800.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-B10, full
            insert sequence
          Length = 1822

 Score =  198 bits (100), Expect = 2e-47
 Identities = 263/316 (83%), Gaps = 1/316 (0%)
 Strand = Plus / Minus

                                                                        
Query: 319  cccttctgcgggcttgttgaggggtaccaagtggccagcccctcttattgtcaccatggt 378
            |||||| || || ||||||||||| |||| ||| || |||||||| |  |||||||| ||
Sbjct: 1561 cccttcagcaggtttgttgaggggaaccaggtgacctgcccctctgacagtcaccattgt 1502

                                                                        
Query: 379  cataccatggtactccacaaatcttccagcaacctgtttgtccaggtaccatggttgcca 438
            ||| ||||||||||||||||| || ||||||||||| ||||| |||||||| | ||||||
Sbjct: 1501 cattccatggtactccacaaacctcccagcaacctgcttgtcaaggtaccaagattgcca 1442

                                                                        
Query: 439  ctgtgacttgataggcaagccaagtgcttccacacaataccgtgacccgatcactgggac 498
             |  | |||||| || | ||| ||||||||||| || ||||| || | ||| || |||||
Sbjct: 1441 atcggtcttgatcggtaggccgagtgcttccacgcagtaccgagaactgataaccgggac 1382

                                                                        
Query: 499  cctgccatctgcatctccactgtagagccagactctcagtcctgctttgatgagcttgga 558
            |||||| || ||||| || ||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 1381 cctgccgtcagcatcaccgctgtagagccaaactctcagccctgctttgatgagcttgga 1322

                                                                        
Query: 559  gtatattggtagaatgggaaagtacggaaaagttgtacgacttcagaatggagtcactgc 618
            |||||| ||||| || ||||||||| || || ||||| || || || ||   ||||||||
Sbjct: 1321 gtatataggtaggat-ggaaagtactgagaaattgtaagagttgaggatttggtcactgc 1263

                            
Query: 619  aaacttgccatttccc 634
            |||||||||| |||||
Sbjct: 1262 aaacttgccacttccc 1247



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>ref|XM_475620.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1524

 Score =  109 bits (55), Expect = 1e-20
 Identities = 160/195 (82%)
 Strand = Plus / Minus

                                                                        
Query: 319  cccttctgcgggcttgttgaggggtaccaagtggccagcccctcttattgtcaccatggt 378
            |||||| || || ||||||||||| |||| ||| || |||||||| |  |||||||| ||
Sbjct: 1470 cccttcagcaggtttgttgaggggaaccaggtgacctgcccctctgacagtcaccattgt 1411

                                                                        
Query: 379  cataccatggtactccacaaatcttccagcaacctgtttgtccaggtaccatggttgcca 438
            ||| ||||||||||||||||| || ||||||||||| ||||| |||||||| | ||||||
Sbjct: 1410 cattccatggtactccacaaacctcccagcaacctgcttgtcaaggtaccaagattgcca 1351

                                                                        
Query: 439  ctgtgacttgataggcaagccaagtgcttccacacaataccgtgacccgatcactgggac 498
             |  | |||||| || | ||| ||||||||||| || ||||| || | ||| || |||||
Sbjct: 1350 atcggtcttgatcggtaggccgagtgcttccacgcagtaccgagaactgataaccgggac 1291

                           
Query: 499  cctgccatctgcatc 513
            |||||| || |||||
Sbjct: 1290 cctgccgtcagcatc 1276



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 102/118 (86%), Gaps = 1/118 (0%)
 Strand = Plus / Minus

                                                                        
Query: 517  actgtagagccagactctcagtcctgctttgatgagcttggagtatattggtagaatggg 576
            |||||||||||| |||||||| |||||||||||||||||||||||||| ||||| || ||
Sbjct: 1197 actgtagagccaaactctcagccctgctttgatgagcttggagtatataggtaggat-gg 1139

                                                                      
Query: 577  aaagtacggaaaagttgtacgacttcagaatggagtcactgcaaacttgccatttccc 634
            ||||||| || || ||||| || || || ||   |||||||||||||||||| |||||
Sbjct: 1138 aaagtactgagaaattgtaagagttgaggatttggtcactgcaaacttgccacttccc 1081



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  105 bits (53), Expect = 2e-19
 Identities = 113/133 (84%)
 Strand = Plus / Minus

                                                                            
Query: 281      agctgtttaccaagaaggaatgtgtcgatcagcgctgtcccttctgcgggcttgttgagg 340
                ||||||||||||||||| |||||||| ||||| |    ||||||| | || || || |||
Sbjct: 12897963 agctgtttaccaagaagaaatgtgtcaatcagagtgagcccttcttcaggtttattaagg 12897904

                                                                            
Query: 341      ggtaccaagtggccagcccctcttattgtcaccatggtcataccatggtactccacaaat 400
                |||||||| || ||||| ||||| || |||||||||||||| |||| |||||||||||||
Sbjct: 12897903 ggtaccaaatgtccagcacctctaatcgtcaccatggtcatgccatcgtactccacaaat 12897844

                             
Query: 401      cttccagcaacct 413
                ||||| |||||||
Sbjct: 12897843 cttcctgcaacct 12897831



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 96/115 (83%)
 Strand = Plus / Plus

                                                                            
Query: 408      caacctgtttgtccaggtaccatggttgccactgtgacttgataggcaagccaagtgctt 467
                ||||||| ||||  |||||||||||||||||||||||||| | ||| | |||||| ||||
Sbjct: 12898777 caacctgattgtttaggtaccatggttgccactgtgacttaacaggaaggccaagggctt 12898836

                                                                       
Query: 468      ccacacaataccgtgacccgatcactgggaccctgccatctgcatctccactgta 522
                | || || ||||| || || || ||||| |||||||||||  | |||||||||||
Sbjct: 12898837 ctacgcagtaccgggatccaataactggaaccctgccatccacgtctccactgta 12898891



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 92/110 (83%)
 Strand = Plus / Minus

                                                                            
Query: 410      acctgtttgtccaggtaccatggttgccactgtgacttgataggcaagccaagtgcttcc 469
                |||||| ||| ||||||||| |||||||| |    ||||||| |||  ||||| ||||||
Sbjct: 12897692 acctgtctgttcaggtaccaaggttgccagtccctcttgatatgcagcccaagcgcttcc 12897633

                                                                  
Query: 470      acacaataccgtgacccgatcactgggaccctgccatctgcatctccact 519
                || || |||| ||||||||||||||||||||| || || |||||||||||
Sbjct: 12897632 acgcagtaccttgacccgatcactgggaccctaccgtcggcatctccact 12897583



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 85/102 (83%), Gaps = 1/102 (0%)
 Strand = Plus / Minus

                                                                            
Query: 518      ctgtagagccagactctcagtcctgctttgatgagcttggagtatattggtagaatggga 577
                ||||||||||| | ||| |||||||||||||||||||| || || ||||| | |    ||
Sbjct: 12897363 ctgtagagccaaattctgagtcctgctttgatgagcttcgaatagattggca-agacaga 12897305

                                                          
Query: 578      aagtacggaaaagttgtacgacttcagaatggagtcactgca 619
                ||| || ||||||||||| ||| | |||||||||||||||||
Sbjct: 12897304 aagcaccgaaaagttgtatgaccttagaatggagtcactgca 12897263



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>dbj|AP003537.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1140D12
          Length = 139301

 Score =  105 bits (53), Expect = 2e-19
 Identities = 113/133 (84%)
 Strand = Plus / Minus

                                                                         
Query: 281   agctgtttaccaagaaggaatgtgtcgatcagcgctgtcccttctgcgggcttgttgagg 340
             ||||||||||||||||| |||||||| ||||| |    ||||||| | || || || |||
Sbjct: 49404 agctgtttaccaagaagaaatgtgtcaatcagagtgagcccttcttcaggtttattaagg 49345

                                                                         
Query: 341   ggtaccaagtggccagcccctcttattgtcaccatggtcataccatggtactccacaaat 400
             |||||||| || ||||| ||||| || |||||||||||||| |||| |||||||||||||
Sbjct: 49344 ggtaccaaatgtccagcacctctaatcgtcaccatggtcatgccatcgtactccacaaat 49285

                          
Query: 401   cttccagcaacct 413
             ||||| |||||||
Sbjct: 49284 cttcctgcaacct 49272



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 96/115 (83%)
 Strand = Plus / Plus

                                                                         
Query: 408   caacctgtttgtccaggtaccatggttgccactgtgacttgataggcaagccaagtgctt 467
             ||||||| ||||  |||||||||||||||||||||||||| | ||| | |||||| ||||
Sbjct: 50218 caacctgattgtttaggtaccatggttgccactgtgacttaacaggaaggccaagggctt 50277

                                                                    
Query: 468   ccacacaataccgtgacccgatcactgggaccctgccatctgcatctccactgta 522
             | || || ||||| || || || ||||| |||||||||||  | |||||||||||
Sbjct: 50278 ctacgcagtaccgggatccaataactggaaccctgccatccacgtctccactgta 50332



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 92/110 (83%)
 Strand = Plus / Minus

                                                                         
Query: 410   acctgtttgtccaggtaccatggttgccactgtgacttgataggcaagccaagtgcttcc 469
             |||||| ||| ||||||||| |||||||| |    ||||||| |||  ||||| ||||||
Sbjct: 49133 acctgtctgttcaggtaccaaggttgccagtccctcttgatatgcagcccaagcgcttcc 49074

                                                               
Query: 470   acacaataccgtgacccgatcactgggaccctgccatctgcatctccact 519
             || || |||| ||||||||||||||||||||| || || |||||||||||
Sbjct: 49073 acgcagtaccttgacccgatcactgggaccctaccgtcggcatctccact 49024



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 85/102 (83%), Gaps = 1/102 (0%)
 Strand = Plus / Minus

                                                                         
Query: 518   ctgtagagccagactctcagtcctgctttgatgagcttggagtatattggtagaatggga 577
             ||||||||||| | ||| |||||||||||||||||||| || || ||||| | |    ||
Sbjct: 48804 ctgtagagccaaattctgagtcctgctttgatgagcttcgaatagattggca-agacaga 48746

                                                       
Query: 578   aagtacggaaaagttgtacgacttcagaatggagtcactgca 619
             ||| || ||||||||||| ||| | |||||||||||||||||
Sbjct: 48745 aagcaccgaaaagttgtatgaccttagaatggagtcactgca 48704



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>dbj|AK067493.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111L08, full
            insert sequence
          Length = 1760

 Score =  103 bits (52), Expect = 8e-19
 Identities = 115/136 (84%)
 Strand = Plus / Minus

                                                                        
Query: 389  tactccacaaatcttccagcaacctgtttgtccaggtaccatggttgccactgtgacttg 448
            ||||| |||||||| ||||||||||| ||||  |||||||||||||||||||||||||| 
Sbjct: 1424 tactcaacaaatctcccagcaacctgattgtttaggtaccatggttgccactgtgactta 1365

                                                                        
Query: 449  ataggcaagccaagtgcttccacacaataccgtgacccgatcactgggaccctgccatct 508
            | ||| | |||||| ||||| || || ||||| || || || ||||| ||||||||||| 
Sbjct: 1364 acaggaaggccaagggcttctacgcagtaccgggatccaataactggaaccctgccatcc 1305

                            
Query: 509  gcatctccactgtaga 524
             | |||||||||||||
Sbjct: 1304 acgtctccactgtaga 1289



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>dbj|AK061997.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-C12, full
            insert sequence
          Length = 1682

 Score =  103 bits (52), Expect = 8e-19
 Identities = 115/136 (84%)
 Strand = Plus / Minus

                                                                        
Query: 389  tactccacaaatcttccagcaacctgtttgtccaggtaccatggttgccactgtgacttg 448
            ||||| |||||||| ||||||||||| ||||  |||||||||||||||||||||||||| 
Sbjct: 1256 tactcaacaaatctcccagcaacctgattgtttaggtaccatggttgccactgtgactta 1197

                                                                        
Query: 449  ataggcaagccaagtgcttccacacaataccgtgacccgatcactgggaccctgccatct 508
            | ||| | |||||| ||||| || || ||||| || || || ||||| ||||||||||| 
Sbjct: 1196 acaggaaggccaagggcttctacgcagtaccgggatccaataactggaaccctgccatcc 1137

                            
Query: 509  gcatctccactgtaga 524
             | |||||||||||||
Sbjct: 1136 acgtctccactgtaga 1121



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>gb|AC119288.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone
            OSJNBa0017J22, complete sequence
          Length = 177153

 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                      
Query: 518  ctgtagagccagactctcagtcctgctttgatgagcttggagtatattggtagaatgg 575
            ||||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct: 9172 ctgtagagccaaactctcagccctgctttgatgagcttggagtatataggtaggatgg 9229



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 82/96 (85%)
 Strand = Plus / Plus

                                                                        
Query: 319  cccttctgcgggcttgttgaggggtaccaagtggccagcccctcttattgtcaccatggt 378
            |||||| || || ||||||||||| |||| ||| || |||||||| |  |||||||| ||
Sbjct: 8652 cccttcagcaggtttgttgaggggaaccaggtgacctgcccctctgacagtcaccattgt 8711

                                                
Query: 379  cataccatggtactccacaaatcttccagcaacctg 414
            ||| ||||||||||||||||| || |||||||||||
Sbjct: 8712 cattccatggtactccacaaacctcccagcaacctg 8747



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                               
Query: 524  agccagactctcagtcctgctttgatgagcttgga 558
            ||||| |||||||| ||||||||||||||||||||
Sbjct: 7906 agccaaactctcagccctgctttgatgagcttgga 7940



 Score = 40.1 bits (20), Expect = 9.7
 Identities = 83/104 (79%)
 Strand = Plus / Plus

                                                                        
Query: 410  acctgtttgtccaggtaccatggttgccactgtgacttgataggcaagccaagtgcttcc 469
            ||||| ||||| |||||||| | |||||| |  | |||||| || | ||| |||||||||
Sbjct: 8837 acctgcttgtcaaggtaccaagattgccaatcggtcttgatcggtaggccgagtgcttcc 8896

                                                        
Query: 470  acacaataccgtgacccgatcactgggaccctgccatctgcatc 513
            || || ||||| || | ||| || ||||||||||| || |||||
Sbjct: 8897 acgcagtaccgagaactgataaccgggaccctgccgtcagcatc 8940



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                         
Query: 518     ctgtagagccagactctcagtcctgctttgatgagcttggagtatattggtagaatgg 575
               ||||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct: 3379690 ctgtagagccaaactctcagccctgctttgatgagcttggagtatataggtaggatgg 3379747



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 82/96 (85%)
 Strand = Plus / Plus

                                                                           
Query: 319     cccttctgcgggcttgttgaggggtaccaagtggccagcccctcttattgtcaccatggt 378
               |||||| || || ||||||||||| |||| ||| || |||||||| |  |||||||| ||
Sbjct: 3379170 cccttcagcaggtttgttgaggggaaccaggtgacctgcccctctgacagtcaccattgt 3379229

                                                   
Query: 379     cataccatggtactccacaaatcttccagcaacctg 414
               ||| ||||||||||||||||| || |||||||||||
Sbjct: 3379230 cattccatggtactccacaaacctcccagcaacctg 3379265



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                       
Query: 519     tgtagagccagactctcagtcctgctttgatgagcttgga 558
               |||||||||| ||||| || ||||||||||||||||||||
Sbjct: 3313901 tgtagagccaaactctgagccctgctttgatgagcttgga 3313940



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                  
Query: 524     agccagactctcagtcctgctttgatgagcttgga 558
               ||||| |||||||| ||||||||||||||||||||
Sbjct: 3378424 agccaaactctcagccctgctttgatgagcttgga 3378458



 Score = 40.1 bits (20), Expect = 9.7
 Identities = 83/104 (79%)
 Strand = Plus / Plus

                                                                           
Query: 410     acctgtttgtccaggtaccatggttgccactgtgacttgataggcaagccaagtgcttcc 469
               ||||| ||||| |||||||| | |||||| |  | |||||| || | ||| |||||||||
Sbjct: 3379355 acctgcttgtcaaggtaccaagattgccaatcggtcttgatcggtaggccgagtgcttcc 3379414

                                                           
Query: 470     acacaataccgtgacccgatcactgggaccctgccatctgcatc 513
               || || ||||| || | ||| || ||||||||||| || |||||
Sbjct: 3379415 acgcagtaccgagaactgataaccgggaccctgccgtcagcatc 3379458



 Score = 40.1 bits (20), Expect = 9.7
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                           
Query: 532     tctcagtcctgctttgatgagcttggagtatattggtagaatgg 575
               |||||| |||||| ||||||||||||| ||| | ||||| ||||
Sbjct: 3368211 tctcagccctgctctgatgagcttggaatatgtaggtaggatgg 3368254



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>ref|NM_183880.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1380

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 70/80 (87%)
 Strand = Plus / Minus

                                                                        
Query: 389  tactccacaaatcttccagcaacctgtttgtccaggtaccatggttgccactgtgacttg 448
            ||||| |||||||| ||||||||||| ||||  |||||||||||||||||||||||||| 
Sbjct: 1250 tactcaacaaatctcccagcaacctgattgtttaggtaccatggttgccactgtgactta 1191

                                
Query: 449  ataggcaagccaagtgcttc 468
            | ||| | |||||| |||||
Sbjct: 1190 acaggaaggccaagggcttc 1171



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>gb|AC087425.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0676G05,
              complete sequence
          Length = 167317

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                      
Query: 519    tgtagagccagactctcagtcctgctttgatgagcttgga 558
              |||||||||| ||||| || ||||||||||||||||||||
Sbjct: 107725 tgtagagccaaactctgagccctgctttgatgagcttgga 107764



 Score = 40.1 bits (20), Expect = 9.7
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                          
Query: 532    tctcagtcctgctttgatgagcttggagtatattggtagaatgg 575
              |||||| |||||| ||||||||||||| ||| | ||||| ||||
Sbjct: 162035 tctcagccctgctctgatgagcttggaatatgtaggtaggatgg 162078



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>ref|XM_475619.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1440

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                               
Query: 524  agccagactctcagtcctgctttgatgagcttgga 558
            ||||| |||||||| ||||||||||||||||||||
Sbjct: 1382 agccaaactctcagccctgctttgatgagcttgga 1416



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>dbj|AP006434.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT36O22, TM0333b,
             complete sequence
          Length = 74925

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 66/79 (83%)
 Strand = Plus / Plus

                                                                         
Query: 442   tgacttgataggcaagccaagtgcttccacacaataccgtgacccgatcactgggaccct 501
             |||||| | |||||| ||||| || || || || || |||| ||| |||||||| || ||
Sbjct: 44956 tgacttaagaggcaatccaagagcctcaacgcagtatcgtgtccctatcactggtactct 45015

                                
Query: 502   gccatctgcatctccactg 520
             |||||||||||||||||||
Sbjct: 45016 gccatctgcatctccactg 45034



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>emb|AL591485.7| Human DNA sequence from clone RP11-293C4 on chromosome 6, complete
             sequence
          Length = 178428

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 57    atcaatgaaaaatataccaag 77
             |||||||||||||||||||||
Sbjct: 26765 atcaatgaaaaatataccaag 26745



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>gb|AC154693.2| Mus musculus BAC clone RP24-340P22 from chromosome 14, complete
             sequence
          Length = 182996

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 276   taggaagctgtttaccaagaaggaa 300
             |||||||||||| ||||||||||||
Sbjct: 50157 taggaagctgttaaccaagaaggaa 50133



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>emb|X72788.1|SCTSL1 S.cerevisiae TSL1 gene for trehalose synthase long chain 1
          Length = 5980

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 155 atcccatctttgaagaaacca 175
           |||||||||||||||||||||
Sbjct: 888 atcccatctttgaagaaacca 908



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>gb|DQ333062.1| Synthetic construct Saccharomyces cerevisiae clone FLH113228.01X
           CAC2 gene, complete sequence
          Length = 1407

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 155 atcccatctttgaagaaacca 175
           |||||||||||||||||||||
Sbjct: 937 atcccatctttgaagaaacca 957



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>emb|X80835.1|SC9514 S.cerevisiae chromosome XIII cosmid 9514
          Length = 13841

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 155  atcccatctttgaagaaacca 175
            |||||||||||||||||||||
Sbjct: 8937 atcccatctttgaagaaacca 8957



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>gb|AC145782.1| Pan troglodytes BAC clone CH251-481A23 from Y, complete sequence
          Length = 184214

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 649    tgacatttgcatgaagtgct 668
              ||||||||||||||||||||
Sbjct: 125443 tgacatttgcatgaagtgct 125462



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>emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207F1 complete genome
          Length = 124321

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 643   tcccattgacatttgcatga 662
             ||||||||||||||||||||
Sbjct: 14378 tcccattgacatttgcatga 14397



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>emb|BX927375.6| Zebrafish DNA sequence from clone CH211-258B24 in linkage group 1,
             complete sequence
          Length = 53738

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 669   ctctgcacatctgccttatttgaa 692
             |||| |||||||||||||||||||
Sbjct: 37959 ctcttcacatctgccttatttgaa 37982



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>dbj|BS000608.1| Pan troglodytes chromosome Y clone:PTB-131K23, complete sequences
          Length = 194068

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 649    tgacatttgcatgaagtgct 668
              ||||||||||||||||||||
Sbjct: 163324 tgacatttgcatgaagtgct 163343



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>dbj|BS000602.1| Pan troglodytes chromosome Y clone:PTB-547B05, complete sequences
          Length = 211728

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 649   tgacatttgcatgaagtgct 668
             ||||||||||||||||||||
Sbjct: 58529 tgacatttgcatgaagtgct 58548



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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 649    tgacatttgcatgaagtgct 668
              ||||||||||||||||||||
Sbjct: 750435 tgacatttgcatgaagtgct 750454



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>gb|AC096631.2| Homo sapiens chromosome 1 clone RP11-16L9, complete sequence
          Length = 159322

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 545   ttgatgagcttggagtatat 564
             ||||||||||||||||||||
Sbjct: 97077 ttgatgagcttggagtatat 97058



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 643      tcccattgacatttgcatga 662
                ||||||||||||||||||||
Sbjct: 35349679 tcccattgacatttgcatga 35349660



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>gb|AC010902.4|AC010902 Homo sapiens clone RP11-549J7, complete sequence
          Length = 114169

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 649   tgacatttgcatgaagtgct 668
             ||||||||||||||||||||
Sbjct: 67523 tgacatttgcatgaagtgct 67542



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>gb|AC147670.4| Pan troglodytes BAC clone CH251-94F1 from chromosome y, complete
             sequence
          Length = 172123

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 649   tgacatttgcatgaagtgct 668
             ||||||||||||||||||||
Sbjct: 27127 tgacatttgcatgaagtgct 27146



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>gb|AC140263.3| Mus musculus BAC clone RP24-299F13 from chromosome 17, complete
             sequence
          Length = 158695

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 421   caggtaccatggttgccact 440
             ||||||||||||||||||||
Sbjct: 64458 caggtaccatggttgccact 64439



 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 421   caggtaccatggttgccact 440
             ||||||||||||||||||||
Sbjct: 61609 caggtaccatggttgccact 61590



 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 421   caggtaccatggttgccact 440
             ||||||||||||||||||||
Sbjct: 58763 caggtaccatggttgccact 58744



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>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24,
              complete sequence
          Length = 173770

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 643    tcccattgacatttgcatga 662
              ||||||||||||||||||||
Sbjct: 145524 tcccattgacatttgcatga 145505



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>dbj|AP006119.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT45C16, TM0203,
             complete sequence
          Length = 110764

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    atcaatgaaaaatataccaa 76
             ||||||||||||||||||||
Sbjct: 65954 atcaatgaaaaatataccaa 65973


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,784,475
Number of Sequences: 3902068
Number of extensions: 5784475
Number of successful extensions: 102479
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102333
Number of HSP's gapped (non-prelim): 140
length of query: 707
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 684
effective length of database: 17,143,297,704
effective search space: 11726015629536
effective search space used: 11726015629536
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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