ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags16e19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZDS_LYCES (Q9SE20) Zeta-carotene desaturase, chloroplast precurs... 28 6.3
2RECO_CHLMU (Q9PJS3) DNA repair protein recO (Recombination prote... 28 8.3
3ZDS_CAPAN (Q9SMJ3) Zeta-carotene desaturase, chloroplast precurs... 28 8.3

>ZDS_LYCES (Q9SE20) Zeta-carotene desaturase, chloroplast precursor (EC|
           1.14.99.30) (Carotene 7,8-desaturase)
          Length = 588

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -2

Query: 162 EHTHSWV--GSSIFVAVFRYGI*VPINQLHLCRSLERLYYYKLXXQGLAVCITP 7
           EHTH++V  G  I    FR+ +  P++ ++   S  +L  Y      +A+ ++P
Sbjct: 160 EHTHTFVNKGGEIGELDFRFPVGAPLHGINAFLSTNQLKIYDKARNAVALALSP 213



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>RECO_CHLMU (Q9PJS3) DNA repair protein recO (Recombination protein O)|
          Length = 234

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 231 WQCPKRPRPKATSLRLAYITNLPEHTHSWVGSSIFV 124
           WQ  ++P P+  SL L ++  +PE  H +  SS+F+
Sbjct: 103 WQ--EKPSPQLFSLFLNFLQRIPETPHPYFFSSMFL 136



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>ZDS_CAPAN (Q9SMJ3) Zeta-carotene desaturase, chloroplast precursor (EC|
           1.14.99.30) (Carotene 7,8-desaturase)
          Length = 588

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -2

Query: 162 EHTHSWV--GSSIFVAVFRYGI*VPINQLHLCRSLERLYYYKLXXQGLAVCITP 7
           EHTH++V  G  I    FR+ +  P++ ++   S  +L  Y      +A+ ++P
Sbjct: 160 EHTHTFVNKGGEIGELDFRFPVGAPLHGINAFLSTNQLKTYDKARNAVALALSP 213


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,212,392
Number of Sequences: 219361
Number of extensions: 585967
Number of successful extensions: 1208
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 80,573,946
effective HSP length: 54
effective length of database: 68,728,452
effective search space used: 1649482848
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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