Clone Information

BLAST Search Result

Clone Name	rbags16e18
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK099970.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	198	1e-47
2	dbj\|AK068717.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	198	1e-47
3	gb\|AY109821.1\| Zea mays CL36095_1 mRNA sequence	174	2e-40
4	gb\|AC135956.6\| Oryza sativa (japonica cultivar-group) chromosome...	96	1e-16
5	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	96	1e-16
6	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	96	1e-16
7	emb\|CR391994.10\| Zebrafish DNA sequence from clone DKEY-239B22, ...	46	0.12
8	emb\|CR339063.8\| Zebrafish DNA sequence from clone CH211-247J10 i...	46	0.12
9	emb\|AL928723.5\| Zebrafish DNA sequence from clone DKEY-252I9 in ...	46	0.12
10	emb\|BX004994.6\| Zebrafish DNA sequence from clone DKEY-24J15 in ...	46	0.12
11	gb\|AC111028.10\| Mus musculus chromosome 8, clone RP23-221P20, co...	44	0.48
12	gb\|AC131921.9\| Mus musculus chromosome 12, clone RP24-231P11, co...	44	0.48
13	emb\|AL160155.19\| Human DNA sequence from clone RP11-461N23 on ch...	44	0.48
14	gb\|AC099525.5\| Papio anubis clone RP41-277O17, complete sequence	44	0.48
15	gb\|AC078863.15\|AC078863 Mus musculus BAC RP23-406N7 (Roswell Pa...	44	0.48
16	emb\|AL929186.7\| Mouse DNA sequence from clone RP23-399K8 on chro...	44	0.48
17	ref\|XM_762032.1\| Giardia lamblia ATCC 50803 heat shock protein 7...	42	1.9
18	gb\|AC142334.1\| Pan troglodytes BAC clone RP43-34J11 from 7, comp...	42	1.9
19	emb\|BX571885.7\| Mouse DNA sequence from clone RP23-17O21 on chro...	42	1.9
20	gb\|AF274582.1\|AF274582 Giardia intestinalis heat shock protein 7...	42	1.9
21	gb\|AC166329.3\| Pan troglodytes BAC clone CH251-143I6 from chromo...	42	1.9
22	dbj\|AB067649.1\| Giardia intestinalis dnaK mRNA for mitochondrial...	42	1.9
23	dbj\|AB056659.1\| Giardia intestinalis gene for mitochondrial type...	42	1.9
24	ref\|XM_474256.1\| Oryza sativa (japonica cultivar-group), predic...	40	7.6
25	gb\|AC113968.12\| Mus musculus chromosome 8, clone RP23-120M17, co...	40	7.6
26	gb\|BC072662.1\| Mus musculus cDNA clone IMAGE:30543871, partial cds	40	7.6
27	gb\|AC165177.2\| Zea mays clone ZMMBBb-188L18, complete sequence	40	7.6
28	gb\|AC012626.10\| Homo sapiens chromosome 16 clone CTD-2118O12, co...	40	7.6
29	emb\|AJ853849.1\| Sus scrofa PRSS11 gene (partial), DMBT1 gene, AW...	40	7.6
30	emb\|AL512633.6\| Human DNA sequence from clone RP11-198M15 on chr...	40	7.6
31	emb\|AL137784.14\| Human DNA sequence from clone RP1-199J3 on chro...	40	7.6
32	emb\|AL008637.1\|HS833B7 Human DNA sequence from clone CTA-833B7 o...	40	7.6
33	gb\|AC104449.3\| Homo sapiens chromosome 3 clone RP11-460N16, comp...	40	7.6
34	gb\|AC161351.3\| Mus musculus chromosome 15, clone RP24-142I15, co...	40	7.6
35	ref\|NM_001016968.2\| Xenopus tropicalis golgi associated, gamma a...	40	7.6
36	emb\|AL606646.3\|OSJN00091 Oryza sativa genomic DNA, chromosome 4,...	40	7.6
37	gb\|AC130650.2\| Homo sapiens chromosome 16 clone CTA-276F8, compl...	40	7.6
38	gb\|AC108050.5\| Homo sapiens BAC clone RP11-331M18 from 4, comple...	40	7.6
39	gb\|AC104639.3\| Homo sapiens 3q BAC RP11-672L16 (Roswell Park Can...	40	7.6
40	gb\|AC103922.2\| Homo sapiens chromosome 3 clone RP11-226E22, comp...	40	7.6
41	gb\|AC165267.2\| Zea mays clone ZMMBBb-151F20, complete sequence	40	7.6
42	gb\|AC026473.7\| Homo sapiens chromosome 16 clone RP11-51O6, compl...	40	7.6
43	gb\|AC153384.4\| Mus musculus 6 BAC RP23-388D3 (Roswell Park Cance...	40	7.6
44	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.6
45	gb\|AC138070.3\| Homo sapiens chromosome 3 clone RP11-263E3, compl...	40	7.6
46	gb\|U91322.1\|HSU91322 Human chromosome 16p13 BAC clone CIT987SK-2...	40	7.6
47	emb\|CR848466.2\| Xenopus tropicalis finished cDNA, clone TEgg087a14	40	7.6
48	dbj\|AB009608.1\| Homo sapiens MITF gene for microphthalmia-associ...	40	7.6
49	emb\|AL713913.10\| Mouse DNA sequence from clone RP23-125F10 on ch...	40	7.6
50	gb\|AC170603.2\| Mus musculus BAC clone RP23-140J10 from chromosom...	40	7.6
51	emb\|AL663091.13\| Mouse DNA sequence from clone RP23-392P11 on ch...	40	7.6
52	gb\|AC138594.10\| Mus musculus chromosome 7, clone RP24-283N22, co...	40	7.6

>dbj|AK099970.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013127L17, full
            insert sequence
          Length = 1439

 Score =  198 bits (100), Expect = 1e-47
 Identities = 184/212 (86%)
 Strand = Plus / Minus

                                                                        
Query: 335  tcaacttgcattatttttcctctccagttttattgcctcgtaagatttgacaacctcctt 394
            ||||||||||| |||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 1100 tcaacttgcatcattttttctctccagttttattgcttcgtatgatttgacaacctcctt 1041

                                                                        
Query: 395  gaactcttcttcagcagtctctctattatcttgattttggtcagggtggacctccattgc 454
             |||   ||||| |||| ||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 1040 aaacctctcttctgcagcctctctattatcttgattttgatcagggtgaacctccattgc 981

                                                                        
Query: 455  ttttgttctaaaagcactctttacttctgcatctgtgtatggagtccctcgtgatctatc 514
            |||||||||||||||| |||| |||||||| || |||||||| ||    ||||| |||| 
Sbjct: 980  ttttgttctaaaagcattcttgacttctgcgtcggtgtatggtgttgtccgtgacctatt 921

                                            
Query: 515  aagaccaagaacggtgtaatgatgtgacatag 546
             |||||||| || || || |||||||||||||
Sbjct: 920  gagaccaaggactgtatagtgatgtgacatag 889



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 50/55 (90%), Gaps = 1/55 (1%)
 Strand = Plus / Minus

                                                                   
Query: 116  cttttgtatctttgtcgacaatatcctacttctacatcagggacgtgtgctccca 170
            |||||| | ||||||||||||||||||| | ||||||||||| ||||||||||||
Sbjct: 1313 cttttgcacctttgtcgacaatatcctagt-ctacatcagggccgtgtgctccca 1260

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>dbj|AK068717.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013163H12, full
            insert sequence
          Length = 1528

 Score =  198 bits (100), Expect = 1e-47
 Identities = 184/212 (86%)
 Strand = Plus / Minus

                                                                        
Query: 335  tcaacttgcattatttttcctctccagttttattgcctcgtaagatttgacaacctcctt 394
            ||||||||||| |||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 1136 tcaacttgcatcattttttctctccagttttattgcttcgtatgatttgacaacctcctt 1077

                                                                        
Query: 395  gaactcttcttcagcagtctctctattatcttgattttggtcagggtggacctccattgc 454
             |||   ||||| |||| ||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 1076 aaacctctcttctgcagcctctctattatcttgattttgatcagggtgaacctccattgc 1017

                                                                        
Query: 455  ttttgttctaaaagcactctttacttctgcatctgtgtatggagtccctcgtgatctatc 514
            |||||||||||||||| |||| |||||||| || |||||||| ||    ||||| |||| 
Sbjct: 1016 ttttgttctaaaagcattcttgacttctgcgtcggtgtatggtgttgtccgtgacctatt 957

                                            
Query: 515  aagaccaagaacggtgtaatgatgtgacatag 546
             |||||||| || || || |||||||||||||
Sbjct: 956  gagaccaaggactgtatagtgatgtgacatag 925



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 50/55 (90%), Gaps = 1/55 (1%)
 Strand = Plus / Minus

                                                                   
Query: 116  cttttgtatctttgtcgacaatatcctacttctacatcagggacgtgtgctccca 170
            |||||| | ||||||||||||||||||| | ||||||||||| ||||||||||||
Sbjct: 1347 cttttgcacctttgtcgacaatatcctagt-ctacatcagggccgtgtgctccca 1294

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>gb|AY109821.1| Zea mays CL36095_1 mRNA sequence
          Length = 490

 Score =  174 bits (88), Expect = 2e-40
 Identities = 166/192 (86%)
 Strand = Plus / Minus

                                                                       
Query: 366 attgcctcgtaagatttgacaacctccttgaactcttcttcagcagtctctctattatct 425
           ||||| |||||||| |||||||||||||||||||  ||||| ||||  ||||||| || |
Sbjct: 421 attgcttcgtaagacttgacaacctccttgaacttctcttctgcagcatctctatcattt 362

                                                                       
Query: 426 tgattttggtcagggtggacctccattgcttttgttctaaaagcactctttacttctgca 485
           |||||||||||||| || || |||||||||||||||||||||||| |||| |||||||||
Sbjct: 361 tgattttggtcaggatgcacttccattgcttttgttctaaaagcagtcttcacttctgca 302

                                                                       
Query: 486 tctgtgtatggagtccctcgtgatctatcaagaccaagaacggtgtaatgatgtgacata 545
           ||||| ||||| ||| |||||||||| |||||||| ||||| |  || ||||| ||||||
Sbjct: 301 tctgtatatggtgtcgctcgtgatctgtcaagacctagaactgcatagtgatgggacata 242

                       
Query: 546 gggtaaccccta 557
           || ||| |||||
Sbjct: 241 ggataaacccta 230

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>gb|AC135956.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0005H20, complete sequence
          Length = 135560

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 54/56 (96%)
 Strand = Plus / Plus

                                                                     
Query: 415   ctctattatcttgattttggtcagggtggacctccattgcttttgttctaaaagca 470
             ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 50283 ctctattatcttgattttgatcagggtgaacctccattgcttttgttctaaaagca 50338



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 56/60 (93%)
 Strand = Plus / Plus

                                                                         
Query: 335   tcaacttgcattatttttcctctccagttttattgcctcgtaagatttgacaacctcctt 394
             ||||||||||| |||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 50104 tcaacttgcatcattttttctctccagttttattgcttcgtatgatttgacaacctcctt 50163



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 50/55 (90%), Gaps = 1/55 (1%)
 Strand = Plus / Plus

                                                                    
Query: 116   cttttgtatctttgtcgacaatatcctacttctacatcagggacgtgtgctccca 170
             |||||| | ||||||||||||||||||| | ||||||||||| ||||||||||||
Sbjct: 49892 cttttgcacctttgtcgacaatatcctagt-ctacatcagggccgtgtgctccca 49945

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 54/56 (96%)
 Strand = Plus / Minus

                                                                        
Query: 415      ctctattatcttgattttggtcagggtggacctccattgcttttgttctaaaagca 470
                ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 29435687 ctctattatcttgattttgatcagggtgaacctccattgcttttgttctaaaagca 29435632



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 56/60 (93%)
 Strand = Plus / Minus

                                                                            
Query: 335      tcaacttgcattatttttcctctccagttttattgcctcgtaagatttgacaacctcctt 394
                ||||||||||| |||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 29435866 tcaacttgcatcattttttctctccagttttattgcttcgtatgatttgacaacctcctt 29435807



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 50/55 (90%), Gaps = 1/55 (1%)
 Strand = Plus / Minus

                                                                       
Query: 116      cttttgtatctttgtcgacaatatcctacttctacatcagggacgtgtgctccca 170
                |||||| | ||||||||||||||||||| | ||||||||||| ||||||||||||
Sbjct: 29436078 cttttgcacctttgtcgacaatatcctagt-ctacatcagggccgtgtgctccca 29436025

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 54/56 (96%)
 Strand = Plus / Minus

                                                                        
Query: 415      ctctattatcttgattttggtcagggtggacctccattgcttttgttctaaaagca 470
                ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 29527109 ctctattatcttgattttgatcagggtgaacctccattgcttttgttctaaaagca 29527054



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 56/60 (93%)
 Strand = Plus / Minus

                                                                            
Query: 335      tcaacttgcattatttttcctctccagttttattgcctcgtaagatttgacaacctcctt 394
                ||||||||||| |||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 29527288 tcaacttgcatcattttttctctccagttttattgcttcgtatgatttgacaacctcctt 29527229



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 50/55 (90%), Gaps = 1/55 (1%)
 Strand = Plus / Minus

                                                                       
Query: 116      cttttgtatctttgtcgacaatatcctacttctacatcagggacgtgtgctccca 170
                |||||| | ||||||||||||||||||| | ||||||||||| ||||||||||||
Sbjct: 29527500 cttttgcacctttgtcgacaatatcctagt-ctacatcagggccgtgtgctccca 29527447

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>emb|CR391994.10| Zebrafish DNA sequence from clone DKEY-239B22, complete sequence
          Length = 157765

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 430   tttggtcagggtggacctccatt 452
             |||||||||||||||||||||||
Sbjct: 99646 tttggtcagggtggacctccatt 99624

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>emb|CR339063.8| Zebrafish DNA sequence from clone CH211-247J10 in linkage group 20,
              complete sequence
          Length = 176083

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 430    tttggtcagggtggacctccatt 452
              |||||||||||||||||||||||
Sbjct: 167608 tttggtcagggtggacctccatt 167630

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>emb|AL928723.5| Zebrafish DNA sequence from clone DKEY-252I9 in linkage group 17,
              complete sequence
          Length = 211720

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 430    tttggtcagggtggacctccatt 452
              |||||||||||||||||||||||
Sbjct: 119148 tttggtcagggtggacctccatt 119126

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>emb|BX004994.6| Zebrafish DNA sequence from clone DKEY-24J15 in linkage group 22,
              complete sequence
          Length = 211945

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 430    tttggtcagggtggacctccatt 452
              |||||||||||||||||||||||
Sbjct: 141004 tttggtcagggtggacctccatt 141026

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>gb|AC111028.10| Mus musculus chromosome 8, clone RP23-221P20, complete sequence
          Length = 193256

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 85     tatggtcaagtcactagctatagacacaca 114
              ||||||||||||||||| | ||||||||||
Sbjct: 109015 tatggtcaagtcactagatttagacacaca 108986

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>gb|AC131921.9| Mus musculus chromosome 12, clone RP24-231P11, complete sequence
          Length = 163117

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 385   caacctccttgaactcttcttc 406
             ||||||||||||||||||||||
Sbjct: 66145 caacctccttgaactcttcttc 66166

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>emb|AL160155.19| Human DNA sequence from clone RP11-461N23 on chromosome 13 Contains
             part of a novel gene (FLJ30001), a H2A histone family,
             pseudogene, the GPR18 gene for G protein-coupled receptor
             18, the EBI2 gene for Epstein-Barr virus induced gene 2
             (lymphocyte-specific G protein-coupled receptor), two
             novel genes and a CpG island, complete sequence
          Length = 149478

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 246   ccacctgatggcatggcctgct 267
             ||||||||||||||||||||||
Sbjct: 57438 ccacctgatggcatggcctgct 57459

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>gb|AC099525.5| Papio anubis clone RP41-277O17, complete sequence
          Length = 163567

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 391   ccttgaactcttcttcagcagt 412
             ||||||||||||||||||||||
Sbjct: 82018 ccttgaactcttcttcagcagt 82039

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>gb|AC078863.15|AC078863 Mus musculus  BAC RP23-406N7 (Roswell Park Cancer Institute Mouse BAC
              Library) complete sequence
          Length = 188008

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 352    tcctctccagttttattgcctc 373
              ||||||||||||||||||||||
Sbjct: 173249 tcctctccagttttattgcctc 173228

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>emb|AL929186.7| Mouse DNA sequence from clone RP23-399K8 on chromosome 2, complete
             sequence
          Length = 198573

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 352   tcctctccagttttattgcctc 373
             ||||||||||||||||||||||
Sbjct: 33997 tcctctccagttttattgcctc 34018

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>ref|XM_762032.1| Giardia lamblia ATCC 50803 heat shock protein 70 (hsp70) partial
           mRNA
          Length = 1923

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 467 agcactctttacttctgcatctgtg 491
           ||||| |||||||||||||||||||
Sbjct: 276 agcacgctttacttctgcatctgtg 252

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>gb|AC142334.1| Pan troglodytes BAC clone RP43-34J11 from 7, complete sequence
          Length = 168008

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 473   ctttacttctgcatctgtgta 493
             |||||||||||||||||||||
Sbjct: 10724 ctttacttctgcatctgtgta 10744

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>emb|BX571885.7| Mouse DNA sequence from clone RP23-17O21 on chromosome 4 Contains a
             glyceraldehyde-3-phosphate dehydrogenase (Gapd)
             pseudogene, a novel gene and the 3' end of a novel gene,
             complete sequence
          Length = 218922

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 422   atcttgattttggtcagggtg 442
             |||||||||||||||||||||
Sbjct: 91540 atcttgattttggtcagggtg 91560

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>gb|AF274582.1|AF274582 Giardia intestinalis heat shock protein 70 gene, complete cds
          Length = 2037

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 467 agcactctttacttctgcatctgtg 491
           ||||| |||||||||||||||||||
Sbjct: 336 agcacgctttacttctgcatctgtg 312

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>gb|AC166329.3| Pan troglodytes BAC clone CH251-143I6 from chromosome unknown, complete
              sequence
          Length = 173896

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 472    tctttacttctgcatctgtgt 492
              |||||||||||||||||||||
Sbjct: 135672 tctttacttctgcatctgtgt 135692

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>dbj|AB067649.1| Giardia intestinalis dnaK mRNA for mitochondrial type 70kDa heat
           shock protein, complete cds
          Length = 1934

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 467 agcactctttacttctgcatctgtg 491
           ||||| |||||||||||||||||||
Sbjct: 283 agcacgctttacttctgcatctgtg 259

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>dbj|AB056659.1| Giardia intestinalis gene for mitochondrial type heat shock protein
            70, complete cds
          Length = 4426

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 467  agcactctttacttctgcatctgtg 491
            ||||| |||||||||||||||||||
Sbjct: 1426 agcacgctttacttctgcatctgtg 1402

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>ref|XM_474256.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 885

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 384 acaacctccttgaactcttc 403
           ||||||||||||||||||||
Sbjct: 614 acaacctccttgaactcttc 595

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>gb|AC113968.12| Mus musculus chromosome 8, clone RP23-120M17, complete sequence
          Length = 220191

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     gcatgcatattcctcaggtg 54
              ||||||||||||||||||||
Sbjct: 112357 gcatgcatattcctcaggtg 112338

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>gb|BC072662.1| Mus musculus cDNA clone IMAGE:30543871, partial cds
          Length = 5401

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 230  attttttgtttgtcatccac 249
            ||||||||||||||||||||
Sbjct: 2212 attttttgtttgtcatccac 2231

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>gb|AC165177.2| Zea mays clone ZMMBBb-188L18, complete sequence
          Length = 137852

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 416   tctattatcttgattttggt 435
             ||||||||||||||||||||
Sbjct: 20966 tctattatcttgattttggt 20985

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>gb|AC012626.10| Homo sapiens chromosome 16 clone CTD-2118O12, complete sequence
          Length = 149370

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 455    ttttgttctaaaagcactct 474
              ||||||||||||||||||||
Sbjct: 134826 ttttgttctaaaagcactct 134807

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>emb|AJ853849.1| Sus scrofa PRSS11 gene (partial), DMBT1 gene, AWN gene, AQN-1 gene,
              PSP-II gene, PSP-I gene, AQN-3 gene and C10ORF120 gene
          Length = 270148

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 348    tttttcctctccagttttat 367
              ||||||||||||||||||||
Sbjct: 188609 tttttcctctccagttttat 188590

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>emb|AL512633.6| Human DNA sequence from clone RP11-198M15 on chromosome X Contains a
             novel pseudogene (HSPC177), complete sequence
          Length = 41356

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 416   tctattatcttgattttggt 435
             ||||||||||||||||||||
Sbjct: 19943 tctattatcttgattttggt 19962

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>emb|AL137784.14| Human DNA sequence from clone RP1-199J3 on chromosome 6 Contains the 5'
             end of the USP45 gene for ubiquitin specific protease 45,
             a novel gene, the CCNC gene for cyclin C, a 40S ribosomal
             protein RPS3 pseudogene, the 5' end of the PRDM13 gene for
             PR-domain zinc-finger protein 13 and 5 CpG islands,
             complete sequence
          Length = 127413

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 363   tttattgcctcgtaagattt 382
             ||||||||||||||||||||
Sbjct: 76874 tttattgcctcgtaagattt 76893

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>emb|AL008637.1|HS833B7 Human DNA sequence from clone CTA-833B7 on chromosome 22q12.3-13.2
             Contains the NCF4 gene for cytosolic neutrophil factor 4
             (40kD), the 5' part of the CSF2RB gene for
             granulocyte-macrophage low-affinity colony stimulating
             factor 2 receptor beta, ESTs, STSs and GSSs, complete
             sequence
          Length = 86574

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 409   cagtctctctattatcttgatttt 432
             ||||||||||||| ||||||||||
Sbjct: 39858 cagtctctctattctcttgatttt 39835

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>gb|AC104449.3| Homo sapiens chromosome 3 clone RP11-460N16, complete sequence
          Length = 174531

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 333   catcaacttgcattattttt 352
             ||||||||||||||||||||
Sbjct: 77623 catcaacttgcattattttt 77642

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>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence
          Length = 161308

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 340   ttgcattatttttcctctcc 359
             ||||||||||||||||||||
Sbjct: 50471 ttgcattatttttcctctcc 50452

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>ref|NM_001016968.2| Xenopus tropicalis golgi associated, gamma adaptin ear containing,
            ARF binding protein 1 (gga1), mRNA
          Length = 2306

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 397  actcttcttcagcagtctct 416
            ||||||||||||||||||||
Sbjct: 1289 actcttcttcagcagtctct 1308

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>emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087O24,
              complete sequence
          Length = 146168

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 384    acaacctccttgaactcttc 403
              ||||||||||||||||||||
Sbjct: 100179 acaacctccttgaactcttc 100160

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>gb|AC130650.2| Homo sapiens chromosome 16 clone CTA-276F8, complete sequence
          Length = 215286

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 455   ttttgttctaaaagcactct 474
             ||||||||||||||||||||
Sbjct: 15687 ttttgttctaaaagcactct 15668

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>gb|AC108050.5| Homo sapiens BAC clone RP11-331M18 from 4, complete sequence
          Length = 214250

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 301   aagtcttcactggaagctcc 320
             ||||||||||||||||||||
Sbjct: 82057 aagtcttcactggaagctcc 82038

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>gb|AC104639.3| Homo sapiens 3q BAC RP11-672L16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 187942

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 346   tatttttcctctccagtttt 365
             ||||||||||||||||||||
Sbjct: 39891 tatttttcctctccagtttt 39910

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>gb|AC103922.2| Homo sapiens chromosome 3 clone RP11-226E22, complete sequence
          Length = 164479

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 349   ttttcctctccagttttatt 368
             ||||||||||||||||||||
Sbjct: 39864 ttttcctctccagttttatt 39845

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>gb|AC165267.2| Zea mays clone ZMMBBb-151F20, complete sequence
          Length = 115478

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 416  tctattatcttgattttggt 435
            ||||||||||||||||||||
Sbjct: 4834 tctattatcttgattttggt 4815

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>gb|AC026473.7| Homo sapiens chromosome 16 clone RP11-51O6, complete sequence
          Length = 170393

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 346    tatttttcctctccagtttt 365
              ||||||||||||||||||||
Sbjct: 132097 tatttttcctctccagtttt 132078

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>gb|AC153384.4| Mus musculus 6 BAC RP23-388D3 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 203979

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 13     aaacatcaggtgtacagcactggc 36
              |||||||| |||||||||||||||
Sbjct: 163236 aaacatcaagtgtacagcactggc 163259

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 384      acaacctccttgaactcttc 403
                ||||||||||||||||||||
Sbjct: 34049283 acaacctccttgaactcttc 34049264

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>gb|AC138070.3| Homo sapiens chromosome 3 clone RP11-263E3, complete sequence
          Length = 169834

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 349   ttttcctctccagttttatt 368
             ||||||||||||||||||||
Sbjct: 93168 ttttcctctccagttttatt 93187

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>gb|U91322.1|HSU91322 Human chromosome 16p13 BAC clone CIT987SK-276F8 complete sequence
          Length = 215286

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 455    ttttgttctaaaagcactct 474
              ||||||||||||||||||||
Sbjct: 199600 ttttgttctaaaagcactct 199619

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>emb|CR848466.2| Xenopus tropicalis finished cDNA, clone TEgg087a14
          Length = 2306

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 397  actcttcttcagcagtctct 416
            ||||||||||||||||||||
Sbjct: 1289 actcttcttcagcagtctct 1308

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>dbj|AB009608.1| Homo sapiens MITF gene for microphthalmia-associated transcription
            factor, partial cds
          Length = 7184

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 333  catcaacttgcattattttt 352
            ||||||||||||||||||||
Sbjct: 5639 catcaacttgcattattttt 5658

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>emb|AL713913.10| Mouse DNA sequence from clone RP23-125F10 on chromosome 2, complete
              sequence
          Length = 190485

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 46     cctcaggtggcaacaaaaac 65
              ||||||||||||||||||||
Sbjct: 133012 cctcaggtggcaacaaaaac 133031

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>gb|AC170603.2| Mus musculus BAC clone RP23-140J10 from chromosome 8, complete sequence
          Length = 221596

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    gcatgcatattcctcaggtg 54
             ||||||||||||||||||||
Sbjct: 53449 gcatgcatattcctcaggtg 53430

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>emb|AL663091.13| Mouse DNA sequence from clone RP23-392P11 on chromosome 2, complete
              sequence
          Length = 196078

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 230    attttttgtttgtcatccac 249
              ||||||||||||||||||||
Sbjct: 114681 attttttgtttgtcatccac 114662

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>gb|AC138594.10| Mus musculus chromosome 7, clone RP24-283N22, complete sequence
          Length = 167184

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 229   aattttttgtttgtcatcca 248
             ||||||||||||||||||||
Sbjct: 48818 aattttttgtttgtcatcca 48799


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,715,392
Number of Sequences: 3902068
Number of extensions: 5715392
Number of successful extensions: 103114
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102911
Number of HSP's gapped (non-prelim): 196
length of query: 557
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 534
effective length of database: 17,143,297,704
effective search space: 9154520973936
effective search space used: 9154520973936
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result