ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15p10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK106543.1| Oryza sativa (japonica cultivar-group) cDNA clon... 228 2e-56
2dbj|AK102102.1| Oryza sativa (japonica cultivar-group) cDNA clon... 228 2e-56
3dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 180 4e-42
4emb|AL928757.3|CNS08CBU Oryza sativa chromosome 12, . BAC OSJNBb... 180 4e-42
5gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 180 4e-42
6emb|AL732377.4|CNS08C90 Oryza sativa chromosome 12, . BAC OSJNBa... 180 4e-42
7gb|AY110785.1| Zea mays CL29449_1 mRNA sequence 100 1e-17
8gb|AC155163.4| Mus musculus BAC clone RP24-341A18 from chromosom... 44 0.54
9gb|AC161765.5| Mus musculus BAC clone RP23-85I5 from chromosome ... 44 0.54
10gb|AC127434.1| Mus musculus BAC clone RP23-189J11 from 19, compl... 42 2.2
11emb|CR933523.10| Zebrafish DNA sequence from clone CH211-127H20 ... 42 2.2
12gb|AC018522.7| Homo sapiens chromosome 18, clone RP11-7N19, comp... 42 2.2
13gb|AC109315.3| Homo sapiens chromosome 18, clone RP11-267C16, co... 42 2.2
14emb|BX936292.9| Mouse DNA sequence from clone RP23-308G12 on chr... 42 2.2
15gb|AC068812.13|AC068812 Homo sapiens chromosome N/A clone RP11-2... 42 2.2
16emb|AL162464.5|CNS01RHT Human chromosome 14 DNA sequence BAC R-8... 42 2.2
17emb|CT009684.7| Mouse DNA sequence from clone RP23-127L21 on chr... 42 2.2
18emb|AL731676.5| Mouse DNA sequence from clone RP23-460B8 on chro... 42 2.2
19gb|AC161120.5| Mus musculus BAC clone RP23-84A2 from chromosome ... 40 8.5
20gb|AC151846.3| Mus musculus BAC clone RP23-13B8 from chromosome ... 40 8.5
21gb|AC160118.2| Mus musculus BAC clone RP23-440L7 from chromosome... 40 8.5
22gb|CP000081.1| Leishmania major chromosome 35, complete sequence 40 8.5
23gb|AC160935.2| Mus musculus BAC clone RP23-456B7 from chromosome... 40 8.5
24ref|XM_870657.1| PREDICTED: Bos taurus similar to olfactory rece... 40 8.5
25gb|AC146043.2| Pan troglodytes BAC clone RP43-109E16 from 7, com... 40 8.5
26gb|AC004455.2| Homo sapiens PAC clone RP5-1032B10 from 7, comple... 40 8.5
27gb|AC103849.3| Homo sapiens chromosome 8, clone RP11-75H14, comp... 40 8.5
28emb|AL603764.27| Human DNA sequence from clone RP11-481L19 on ch... 40 8.5
29emb|AL050344.31|HSJ799D16 Human DNA sequence from clone RP4-799D... 40 8.5
30emb|AL031654.6|HS128O17 Human DNA sequence from clone RP1-128O17... 40 8.5
31emb|AL034351.1|HS879K22 Human DNA sequence from clone RP5-879K22... 40 8.5
32emb|X52101.1|MMP25K Mouse mRNA for a 25kDa nuclear protein found... 40 8.5
33emb|BX842682.1| Neurospora crassa DNA linkage group I BAC contig... 40 8.5
34emb|AJ133190.1|SWH133190 Synechococcus WH7803 psaA and psaB genes 40 8.5
35emb|CR628406.8| Zebrafish DNA sequence from clone CH211-146A2 in... 40 8.5
36ref|NM_008956.1| Mus musculus polypyrimidine tract binding prote... 40 8.5
37gb|AC087114.7| Mus musculus Strain C57BL6/J Chromosome 10 RP23-3... 40 8.5
38gb|AC105242.4| Homo sapiens chromosome 8, clone CTD-2386G14, com... 40 8.5
39gb|AC018995.7| Homo sapiens chromosome 8, clone RP11-652L3, comp... 40 8.5
40gb|AC157474.2| Mus musculus BAC clone RP24-565B5 from chromosome... 40 8.5
41gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chr... 40 8.5
42dbj|AP006276.1| Homo sapiens genomic DNA, chromosome 8q13.3, clo... 40 8.5
43emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa... 40 8.5
44emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa... 40 8.5
45emb|AL928839.10| Mouse DNA sequence from clone RP23-298M2 on chr... 40 8.5 
>dbj|AK106543.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-E12, full
            insert sequence
          Length = 1746

 Score =  228 bits (115), Expect = 2e-56
 Identities = 282/335 (84%), Gaps = 7/335 (2%)
 Strand = Plus / Minus

                                                                        
Query: 295  ttcatctctttccgcccttcaatctttgagctatcaatcgaaccgcctgatttcccaact 354
            |||||| |||||||| |||  | ||||| |||||||| || |  ||| | ||||||| ||
Sbjct: 1320 ttcatcgctttccgctctttgacctttgtgctatcaagcggattgcccgctttcccagct 1261

                                                                        
Query: 355  ctaagttctcagagctgccattatctaactgaa--cacaaagcatgccgctgatgacatt 412
            ||| ||||||||| || ||||||||||||||||  |||||||  ||||  |||| |||||
Sbjct: 1260 ctatgttctcagacctaccattatctaactgaaggcacaaag--tgccattgattacatt 1203

                                                                        
Query: 413  ggataccaccccttgatgccatttcccatcagaagctaattggatctcaatcctcttccc 472
             || || ||||| ||||||||||| |||||||||||||  |||| |||||||||||||||
Sbjct: 1202 cgagactaccccctgatgccatttgccatcagaagctagctggacctcaatcctcttccc 1143

                                                                        
Query: 473  aattgcatcattgcccaacttgcgcagtatccaggtcgcatccattgcttcatcgcctgt 532
            ||| ||||| ||||||||||||||||| |||||| |||||||||||||||| || |||||
Sbjct: 1142 aatcgcatccttgcccaacttgcgcaggatccagttcgcatccattgcttcttctcctgt 1083

                                                                        
Query: 533  gctctgcccatgcctcttg---gatggagtactaccctctgagccatccatcttgtctgt 589
            ||||||| |||| ||||||   | |||||   |||  || || |||||||||||||||  
Sbjct: 1082 gctctgctcatgtctcttggcagctggagccttactttccgaaccatccatcttgtctaa 1023

                                               
Query: 590  tgaaggtcttttcctctttgatctctggcctttag 624
            ||||||||| |||||||||||||||||||||||||
Sbjct: 1022 tgaaggtctcttcctctttgatctctggcctttag 988
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>dbj|AK102102.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033084A01, full
            insert sequence
          Length = 2556

 Score =  228 bits (115), Expect = 2e-56
 Identities = 282/335 (84%), Gaps = 7/335 (2%)
 Strand = Plus / Minus

                                                                        
Query: 295  ttcatctctttccgcccttcaatctttgagctatcaatcgaaccgcctgatttcccaact 354
            |||||| |||||||| |||  | ||||| |||||||| || |  ||| | ||||||| ||
Sbjct: 2152 ttcatcgctttccgctctttgacctttgtgctatcaagcggattgcccgctttcccagct 2093

                                                                        
Query: 355  ctaagttctcagagctgccattatctaactgaa--cacaaagcatgccgctgatgacatt 412
            ||| ||||||||| || ||||||||||||||||  |||||||  ||||  |||| |||||
Sbjct: 2092 ctatgttctcagacctaccattatctaactgaaggcacaaag--tgccattgattacatt 2035

                                                                        
Query: 413  ggataccaccccttgatgccatttcccatcagaagctaattggatctcaatcctcttccc 472
             || || ||||| ||||||||||| |||||||||||||  |||| |||||||||||||||
Sbjct: 2034 cgagactaccccctgatgccatttgccatcagaagctagctggacctcaatcctcttccc 1975

                                                                        
Query: 473  aattgcatcattgcccaacttgcgcagtatccaggtcgcatccattgcttcatcgcctgt 532
            ||| ||||| ||||||||||||||||| |||||| |||||||||||||||| || |||||
Sbjct: 1974 aatcgcatccttgcccaacttgcgcaggatccagttcgcatccattgcttcttctcctgt 1915

                                                                        
Query: 533  gctctgcccatgcctcttg---gatggagtactaccctctgagccatccatcttgtctgt 589
            ||||||| |||| ||||||   | |||||   |||  || || |||||||||||||||  
Sbjct: 1914 gctctgctcatgtctcttggcagctggagccttactttccgaaccatccatcttgtctaa 1855

                                               
Query: 590  tgaaggtcttttcctctttgatctctggcctttag 624
            ||||||||| |||||||||||||||||||||||||
Sbjct: 1854 tgaaggtctcttcctctttgatctctggcctttag 1820
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  180 bits (91), Expect = 4e-42
 Identities = 171/197 (86%), Gaps = 3/197 (1%)
 Strand = Plus / Plus

                                                                            
Query: 431      ccatttcccatcagaagctaattggatctcaatcctcttcccaattgcatcattgcccaa 490
                |||||| |||||||||||||  |||| |||||||||||||||||| ||||| ||||||||
Sbjct: 20843139 ccatttgccatcagaagctagctggacctcaatcctcttcccaatcgcatccttgcccaa 20843198

                                                                            
Query: 491      cttgcgcagtatccaggtcgcatccattgcttcatcgcctgtgctctgcccatgcctctt 550
                ||||||||| |||||| |||||||||||||||| || |||||||||||| |||| |||||
Sbjct: 20843199 cttgcgcaggatccagttcgcatccattgcttcttctcctgtgctctgctcatgtctctt 20843258

                                                                            
Query: 551      g---gatggagtactaccctctgagccatccatcttgtctgttgaaggtcttttcctctt 607
                |   | |||||   |||  || || |||||||||||||||  ||||||||| ||||||||
Sbjct: 20843259 ggcagctggagccttactttccgaaccatccatcttgtctaatgaaggtctcttcctctt 20843318

                                 
Query: 608      tgatctctggcctttag 624
                |||||||||||||||||
Sbjct: 20843319 tgatctctggcctttag 20843335



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 77/93 (82%)
 Strand = Plus / Plus

                                                                            
Query: 295      ttcatctctttccgcccttcaatctttgagctatcaatcgaaccgcctgatttcccaact 354
                |||||| |||||||| |||  | ||||| |||||||| || |  ||| | ||||||| ||
Sbjct: 20842597 ttcatcgctttccgctctttgacctttgtgctatcaagcggattgcccgctttcccagct 20842656

                                                 
Query: 355      ctaagttctcagagctgccattatctaactgaa 387
                ||| ||||||||| || ||||||||||||||||
Sbjct: 20842657 ctatgttctcagacctaccattatctaactgaa 20842689



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 99       gcaaatgagcttcaaacaac 118
                ||||||||||||||||||||
Sbjct: 22915128 gcaaatgagcttcaaacaac 22915109
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>emb|AL928757.3|CNS08CBU Oryza sativa chromosome 12, . BAC OSJNBb0046O08 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 101075

 Score =  180 bits (91), Expect = 4e-42
 Identities = 171/197 (86%), Gaps = 3/197 (1%)
 Strand = Plus / Plus

                                                                         
Query: 431   ccatttcccatcagaagctaattggatctcaatcctcttcccaattgcatcattgcccaa 490
             |||||| |||||||||||||  |||| |||||||||||||||||| ||||| ||||||||
Sbjct: 44869 ccatttgccatcagaagctagctggacctcaatcctcttcccaatcgcatccttgcccaa 44928

                                                                         
Query: 491   cttgcgcagtatccaggtcgcatccattgcttcatcgcctgtgctctgcccatgcctctt 550
             ||||||||| |||||| |||||||||||||||| || |||||||||||| |||| |||||
Sbjct: 44929 cttgcgcaggatccagttcgcatccattgcttcttctcctgtgctctgctcatgtctctt 44988

                                                                         
Query: 551   g---gatggagtactaccctctgagccatccatcttgtctgttgaaggtcttttcctctt 607
             |   | |||||   |||  || || |||||||||||||||  ||||||||| ||||||||
Sbjct: 44989 ggcagctggagccttactttccgaaccatccatcttgtctaatgaaggtctcttcctctt 45048

                              
Query: 608   tgatctctggcctttag 624
             |||||||||||||||||
Sbjct: 45049 tgatctctggcctttag 45065



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 77/93 (82%)
 Strand = Plus / Plus

                                                                         
Query: 295   ttcatctctttccgcccttcaatctttgagctatcaatcgaaccgcctgatttcccaact 354
             |||||| |||||||| |||  | ||||| |||||||| || |  ||| | ||||||| ||
Sbjct: 44327 ttcatcgctttccgctctttgacctttgtgctatcaagcggattgcccgctttcccagct 44386

                                              
Query: 355   ctaagttctcagagctgccattatctaactgaa 387
             ||| ||||||||| || ||||||||||||||||
Sbjct: 44387 ctatgttctcagacctaccattatctaactgaa 44419
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  180 bits (91), Expect = 4e-42
 Identities = 171/197 (86%), Gaps = 3/197 (1%)
 Strand = Plus / Plus

                                                                            
Query: 431      ccatttcccatcagaagctaattggatctcaatcctcttcccaattgcatcattgcccaa 490
                |||||| |||||||||||||  |||| |||||||||||||||||| ||||| ||||||||
Sbjct: 20769353 ccatttgccatcagaagctagctggacctcaatcctcttcccaatcgcatccttgcccaa 20769412

                                                                            
Query: 491      cttgcgcagtatccaggtcgcatccattgcttcatcgcctgtgctctgcccatgcctctt 550
                ||||||||| |||||| |||||||||||||||| || |||||||||||| |||| |||||
Sbjct: 20769413 cttgcgcaggatccagttcgcatccattgcttcttctcctgtgctctgctcatgtctctt 20769472

                                                                            
Query: 551      g---gatggagtactaccctctgagccatccatcttgtctgttgaaggtcttttcctctt 607
                |   | |||||   |||  || || |||||||||||||||  ||||||||| ||||||||
Sbjct: 20769473 ggcagctggagccttactttccgaaccatccatcttgtctaatgaaggtctcttcctctt 20769532

                                 
Query: 608      tgatctctggcctttag 624
                |||||||||||||||||
Sbjct: 20769533 tgatctctggcctttag 20769549



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 77/93 (82%)
 Strand = Plus / Plus

                                                                            
Query: 295      ttcatctctttccgcccttcaatctttgagctatcaatcgaaccgcctgatttcccaact 354
                |||||| |||||||| |||  | ||||| |||||||| || |  ||| | ||||||| ||
Sbjct: 20768811 ttcatcgctttccgctctttgacctttgtgctatcaagcggattgcccgctttcccagct 20768870

                                                 
Query: 355      ctaagttctcagagctgccattatctaactgaa 387
                ||| ||||||||| || ||||||||||||||||
Sbjct: 20768871 ctatgttctcagacctaccattatctaactgaa 20768903



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 99       gcaaatgagcttcaaacaac 118
                ||||||||||||||||||||
Sbjct: 22843319 gcaaatgagcttcaaacaac 22843300
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>emb|AL732377.4|CNS08C90 Oryza sativa chromosome 12, . BAC OSJNBa0036E08 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 149022

 Score =  180 bits (91), Expect = 4e-42
 Identities = 171/197 (86%), Gaps = 3/197 (1%)
 Strand = Plus / Plus

                                                                          
Query: 431    ccatttcccatcagaagctaattggatctcaatcctcttcccaattgcatcattgcccaa 490
              |||||| |||||||||||||  |||| |||||||||||||||||| ||||| ||||||||
Sbjct: 140980 ccatttgccatcagaagctagctggacctcaatcctcttcccaatcgcatccttgcccaa 141039

                                                                          
Query: 491    cttgcgcagtatccaggtcgcatccattgcttcatcgcctgtgctctgcccatgcctctt 550
              ||||||||| |||||| |||||||||||||||| || |||||||||||| |||| |||||
Sbjct: 141040 cttgcgcaggatccagttcgcatccattgcttcttctcctgtgctctgctcatgtctctt 141099

                                                                          
Query: 551    g---gatggagtactaccctctgagccatccatcttgtctgttgaaggtcttttcctctt 607
              |   | |||||   |||  || || |||||||||||||||  ||||||||| ||||||||
Sbjct: 141100 ggcagctggagccttactttccgaaccatccatcttgtctaatgaaggtctcttcctctt 141159

                               
Query: 608    tgatctctggcctttag 624
              |||||||||||||||||
Sbjct: 141160 tgatctctggcctttag 141176



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 77/93 (82%)
 Strand = Plus / Plus

                                                                          
Query: 295    ttcatctctttccgcccttcaatctttgagctatcaatcgaaccgcctgatttcccaact 354
              |||||| |||||||| |||  | ||||| |||||||| || |  ||| | ||||||| ||
Sbjct: 140438 ttcatcgctttccgctctttgacctttgtgctatcaagcggattgcccgctttcccagct 140497

                                               
Query: 355    ctaagttctcagagctgccattatctaactgaa 387
              ||| ||||||||| || ||||||||||||||||
Sbjct: 140498 ctatgttctcagacctaccattatctaactgaa 140530
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>gb|AY110785.1| Zea mays CL29449_1 mRNA sequence
          Length = 568

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 116/138 (84%)
 Strand = Plus / Plus

                                                                       
Query: 359 gttctcagagctgccattatctaactgaacacaaagcatgccgctgatgacattggatac 418
           ||||||||| |||||||| |||||||||| ||| ||  |||| |  |||||||| || ||
Sbjct: 419 gttctcagacctgccattgtctaactgaatacacagtgtgccacccatgacattcgacac 478

                                                                       
Query: 419 caccccttgatgccatttcccatcagaagctaattggatctcaatcctcttcccaattgc 478
           || ||||||||||||||| |||||||||| ||  ||||  ||||||||||| || || ||
Sbjct: 479 catcccttgatgccatttgccatcagaagttagatggacttcaatcctctttccgatagc 538

                             
Query: 479 atcattgcccaacttgcg 496
           ||| ||||||||||||||
Sbjct: 539 atccttgcccaacttgcg 556
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>gb|AC155163.4| Mus musculus BAC clone RP24-341A18 from chromosome 8, complete sequence
          Length = 207406

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 383    ctgaacacaaagcatgccgctg 404
              ||||||||||||||||||||||
Sbjct: 197458 ctgaacacaaagcatgccgctg 197437
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>gb|AC161765.5| Mus musculus BAC clone RP23-85I5 from chromosome 8, complete sequence
          Length = 219629

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 383    ctgaacacaaagcatgccgctg 404
              ||||||||||||||||||||||
Sbjct: 120164 ctgaacacaaagcatgccgctg 120143
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>gb|AC127434.1| Mus musculus BAC clone RP23-189J11 from 19, complete sequence
          Length = 199422

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 564    ccctctgagccatccatcttg 584
              |||||||||||||||||||||
Sbjct: 146852 ccctctgagccatccatcttg 146872
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>emb|CR933523.10| Zebrafish DNA sequence from clone CH211-127H20 in linkage group 8,
             complete sequence
          Length = 112751

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 101   aaatgagcttcaaacaacacg 121
             |||||||||||||||||||||
Sbjct: 24935 aaatgagcttcaaacaacacg 24955
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>gb|AC018522.7| Homo sapiens chromosome 18, clone RP11-7N19, complete sequence
          Length = 169578

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 432   catttcccatcagaagctaat 452
             |||||||||||||||||||||
Sbjct: 67986 catttcccatcagaagctaat 68006
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>gb|AC109315.3| Homo sapiens chromosome 18, clone RP11-267C16, complete sequence
          Length = 157966

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 432   catttcccatcagaagctaat 452
             |||||||||||||||||||||
Sbjct: 45947 catttcccatcagaagctaat 45927
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>emb|BX936292.9| Mouse DNA sequence from clone RP23-308G12 on chromosome X, complete
             sequence
          Length = 147890

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 580   tcttgtctgttgaaggtcttttcctcttt 608
             |||||| ||| ||||||||||||||||||
Sbjct: 85281 tcttgtatgtagaaggtcttttcctcttt 85253
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>gb|AC068812.13|AC068812 Homo sapiens chromosome N/A clone RP11-201E13, complete sequence
          Length = 177862

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 344  atttcccaactctaagttctc 364
            |||||||||||||||||||||
Sbjct: 8327 atttcccaactctaagttctc 8307
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>emb|AL162464.5|CNS01RHT Human chromosome 14 DNA sequence BAC R-81F13 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 170110

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 344   atttcccaactctaagttctc 364
             |||||||||||||||||||||
Sbjct: 70790 atttcccaactctaagttctc 70810
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>emb|CT009684.7| Mouse DNA sequence from clone RP23-127L21 on chromosome 13, complete
             sequence
          Length = 205067

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 210   ggcagcatgtggaggagccac 230
             |||||||||||||||||||||
Sbjct: 89742 ggcagcatgtggaggagccac 89722
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>emb|AL731676.5| Mouse DNA sequence from clone RP23-460B8 on chromosome X, complete
              sequence
          Length = 180106

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 580    tcttgtctgttgaaggtcttttcctcttt 608
              |||||| ||| ||||||||||||||||||
Sbjct: 147479 tcttgtatgtagaaggtcttttcctcttt 147451
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>gb|AC161120.5| Mus musculus BAC clone RP23-84A2 from chromosome 10, complete sequence
          Length = 214638

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 558   gtactaccctctgagccatc 577
             ||||||||||||||||||||
Sbjct: 29936 gtactaccctctgagccatc 29917
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>gb|AC151846.3| Mus musculus BAC clone RP23-13B8 from chromosome 10, complete sequence
          Length = 252639

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 558    gtactaccctctgagccatc 577
              ||||||||||||||||||||
Sbjct: 135472 gtactaccctctgagccatc 135491
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>gb|AC160118.2| Mus musculus BAC clone RP23-440L7 from chromosome 9, complete sequence
          Length = 198672

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 373   cattatctaactgaacacaaagca 396
             |||| |||||||||||||||||||
Sbjct: 79563 cattctctaactgaacacaaagca 79540
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>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 113     aacaacacggaaaacaaaag 132
               ||||||||||||||||||||
Sbjct: 1588075 aacaacacggaaaacaaaag 1588056
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>gb|AC160935.2| Mus musculus BAC clone RP23-456B7 from chromosome 9, complete
            sequence
          Length = 178690

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 562  taccctctgagccatccatc 581
            ||||||||||||||||||||
Sbjct: 3592 taccctctgagccatccatc 3611
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>ref|XM_870657.1| PREDICTED: Bos taurus similar to olfactory receptor Olr554
           (LOC618326), mRNA
          Length = 894

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 426 tgatgccatttcccatcaga 445
           ||||||||||||||||||||
Sbjct: 106 tgatgccatttcccatcaga 87
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>gb|AC146043.2| Pan troglodytes BAC clone RP43-109E16 from 7, complete sequence
          Length = 154413

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 528   cctgtgctctgcccatgcct 547
             ||||||||||||||||||||
Sbjct: 26996 cctgtgctctgcccatgcct 27015
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>gb|AC004455.2| Homo sapiens PAC clone RP5-1032B10 from 7, complete sequence
          Length = 78520

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 528  cctgtgctctgcccatgcct 547
            ||||||||||||||||||||
Sbjct: 7850 cctgtgctctgcccatgcct 7869
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>gb|AC103849.3| Homo sapiens chromosome 8, clone RP11-75H14, complete sequence
          Length = 147107

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 528   cctgtgctctgcccatgcct 547
             ||||||||||||||||||||
Sbjct: 69194 cctgtgctctgcccatgcct 69175
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>emb|AL603764.27| Human DNA sequence from clone RP11-481L19 on chromosome 10 Contains the
             3' end of the PRSS11 gene for protease serine 11 (IGF
             binding) and the DMBT1 gene for deleted in malignant brain
             tumors 1, complete sequence
          Length = 191741

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 360   ttctcagagctgccattatc 379
             ||||||||||||||||||||
Sbjct: 25254 ttctcagagctgccattatc 25235
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>emb|AL050344.31|HSJ799D16 Human DNA sequence from clone RP4-799D16 on chromosome 1p34.3-36.1
              Contains the 3' end of a novel gene, complete sequence
          Length = 127109

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 374    attatctaactgaacacaaa 393
              ||||||||||||||||||||
Sbjct: 126171 attatctaactgaacacaaa 126190
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>emb|AL031654.6|HS128O17 Human DNA sequence from clone RP1-128O17 on chromosome 20q11.23-12
           Contains STSs and GSSs, complete sequence
          Length = 106373

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 87  aattcaatggaagcaaatgagctt 110
           |||||||||||||| |||||||||
Sbjct: 534 aattcaatggaagcgaatgagctt 557
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>emb|AL034351.1|HS879K22 Human DNA sequence from clone RP5-879K22 on chromosome 1q32.1-41
             Contains part of the gene for melanoma antigen recognized
             by T cells 2 protein (MART2), complete sequence
          Length = 137678

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 265   aggaagagacgagattagat 284
             ||||||||||||||||||||
Sbjct: 92917 aggaagagacgagattagat 92936
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>emb|X52101.1|MMP25K Mouse mRNA for a 25kDa nuclear protein found in murine plasmacytoma
          Length = 3083

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 558  gtactaccctctgagccatc 577
            ||||||||||||||||||||
Sbjct: 2840 gtactaccctctgagccatc 2821
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>emb|BX842682.1| Neurospora crassa DNA linkage group I BAC contig B13C5
          Length = 116467

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    ctctcccagttgctacacta 83
             ||||||||||||||||||||
Sbjct: 64576 ctctcccagttgctacacta 64557
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>emb|AJ133190.1|SWH133190 Synechococcus WH7803 psaA and psaB genes
          Length = 4888

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 200 tccagtcagcggcagcatgtggaggagc 227
           |||||||| |||||||||||||| ||||
Sbjct: 953 tccagtcaccggcagcatgtggatgagc 980
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>emb|CR628406.8| Zebrafish DNA sequence from clone CH211-146A2 in linkage group 11,
             complete sequence
          Length = 145678

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    gaagcaaatgagcttcaaac 115
             ||||||||||||||||||||
Sbjct: 65277 gaagcaaatgagcttcaaac 65296
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>ref|NM_008956.1| Mus musculus polypyrimidine tract binding protein 1 (Ptbp1), mRNA
          Length = 3083

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 558  gtactaccctctgagccatc 577
            ||||||||||||||||||||
Sbjct: 2840 gtactaccctctgagccatc 2821
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>gb|AC087114.7| Mus musculus Strain C57BL6/J Chromosome 10 RP23-309M23, complete
             sequence
          Length = 185825

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 558   gtactaccctctgagccatc 577
             ||||||||||||||||||||
Sbjct: 20831 gtactaccctctgagccatc 20812
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>gb|AC105242.4| Homo sapiens chromosome 8, clone CTD-2386G14, complete sequence
          Length = 112928

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 353  ctctaagttctcagagctgc 372
            ||||||||||||||||||||
Sbjct: 8915 ctctaagttctcagagctgc 8934
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>gb|AC018995.7| Homo sapiens chromosome 8, clone RP11-652L3, complete sequence
          Length = 161479

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 353    ctctaagttctcagagctgc 372
              ||||||||||||||||||||
Sbjct: 117542 ctctaagttctcagagctgc 117561
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>gb|AC157474.2| Mus musculus BAC clone RP24-565B5 from chromosome 9, complete sequence
          Length = 192701

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 562    taccctctgagccatccatc 581
              ||||||||||||||||||||
Sbjct: 140349 taccctctgagccatccatc 140368
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>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete
               sequence
          Length = 4332241

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 86      caattcaatggaagcaaatg 105
               ||||||||||||||||||||
Sbjct: 3796674 caattcaatggaagcaaatg 3796655
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>dbj|AP006276.1| Homo sapiens genomic DNA, chromosome 8q13.3, clone: KB1315B7, complete
             sequence
          Length = 147415

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 353   ctctaagttctcagagctgc 372
             ||||||||||||||||||||
Sbjct: 33386 ctctaagttctcagagctgc 33405
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>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 155568

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 99    gcaaatgagcttcaaacaac 118
             ||||||||||||||||||||
Sbjct: 24405 gcaaatgagcttcaaacaac 24386
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>emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa0040P10 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 148705

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    gcaaatgagcttcaaacaac 118
             ||||||||||||||||||||
Sbjct: 41716 gcaaatgagcttcaaacaac 41735
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>emb|AL928839.10| Mouse DNA sequence from clone RP23-298M2 on chromosome 2, complete
             sequence
          Length = 140119

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 556   gagtactaccctctgagcca 575
             ||||||||||||||||||||
Sbjct: 86958 gagtactaccctctgagcca 86977


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,184,601
Number of Sequences: 3902068
Number of extensions: 5184601
Number of successful extensions: 91339
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91128
Number of HSP's gapped (non-prelim): 209
length of query: 624
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 601
effective length of database: 17,143,297,704
effective search space: 10303121920104
effective search space used: 10303121920104
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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