ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags16e15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_475657.1| Oryza sativa (japonica cultivar-group), predic... 98 1e-17
2gb|AC134341.2| Oryza sativa (japonica cultivar-group) chromosome... 98 1e-17
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 98 1e-17
4ref|NM_184511.1| Oryza sativa (japonica cultivar-group), mRNA 82 8e-13
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 82 8e-13
6dbj|AP003301.3| Oryza sativa (japonica cultivar-group) genomic D... 82 8e-13
7ref|NM_184654.1| Oryza sativa (japonica cultivar-group), mRNA 72 8e-10
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 72 8e-10
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 72 8e-10
10gb|AC097367.3| Oryza sativa chromosome 3 BAC OSJNBa0051C19 genom... 72 8e-10
11ref|XM_474003.1| Oryza sativa (japonica cultivar-group), predic... 64 2e-07
12emb|AL606650.5|OSJN00097 Oryza sativa genomic DNA, chromosome 4,... 64 2e-07
13dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 64 2e-07
14dbj|AK108022.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 2e-07
15emb|AL732334.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 64 2e-07
16emb|AL732336.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 64 2e-07
17emb|AL662988.4|OSJN00186 Oryza sativa genomic DNA, chromosome 4,... 64 2e-07
18gb|AC135568.3| Oryza sativa (japonica cultivar-group) chromosome... 56 5e-05
19dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 56 5e-05
20gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 56 5e-05
21gb|AC135924.2| Oryza sativa (japonica cultivar-group) chromosome... 54 2e-04
22dbj|AK109305.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 2e-04
23ref|NM_190413.1| Oryza sativa (japonica cultivar-group), predic... 46 0.046
24dbj|AP003315.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.046
25dbj|AK111090.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.046
26gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 44 0.18
27dbj|AP002861.2| Oryza sativa (japonica cultivar-group) genomic D... 42 0.72
28dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic D... 42 0.72
29ref|XM_482849.1| Oryza sativa (japonica cultivar-group), mRNA 40 2.8
30gb|AC148235.2| Oryza sativa (japonica cultivar-group) chromosome... 40 2.8
31gb|AC144743.4| Oryza sativa (japonica cultivar-group) chromosome... 40 2.8
32gb|AC145395.3| Oryza sativa (japonica cultivar-group) chromosome... 40 2.8
33gb|AC074196.14| Oryza sativa chromosome 10 BAC OSJNBa0040D23 gen... 40 2.8
34tpg|BK000940.1| TPA: TPA_inf: Oryza sativa transposon Rim2-M332,... 40 2.8
35gb|AC151987.4| Mus musculus BAC clone RP23-356C20 from chromosom... 40 2.8
36gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 2.8
37dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
38dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
39dbj|AP004232.4| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
40gb|AF497482.1| Micromonospora echinospora calicheamicin biosynth... 40 2.8
41dbj|AP006461.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
42dbj|AK073548.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.8
43dbj|AK068850.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.8
44gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 2.8 
>ref|XM_475657.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 513

 Score = 97.6 bits (49), Expect = 1e-17
 Identities = 67/73 (91%)
 Strand = Plus / Minus

                                                                       
Query: 49  ccggcaccgaggacgccgggatgaggaagtatatctggccgcgctccagctcggactccg 108
           ||||||| ||||| ||||||||||||||||| |||| |||||||||||||||||| ||||
Sbjct: 277 ccggcacggaggaggccgggatgaggaagtagatctcgccgcgctccagctcggagtccg 218

                        
Query: 109 gggagacgatgag 121
           | |||||||||||
Sbjct: 217 gcgagacgatgag 205



 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 69/79 (87%)
 Strand = Plus / Minus

                                                                       
Query: 145 agcacggcttgctcagcacgtggtttgngttancgganaggatctcgccggcggcgaccg 204
           ||||||||||||| || |||||||| | |||  |||  ||||||||||||||||||||||
Sbjct: 166 agcacggcttgctgaggacgtggttggggttggcggcgaggatctcgccggcggcgaccg 107

                              
Query: 205 gccggccgtactcctcgac 223
           | || ||||||||||||||
Sbjct: 106 ggcgcccgtactcctcgac 88
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>gb|AC134341.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0027N19, complete sequence
          Length = 141368

 Score = 97.6 bits (49), Expect = 1e-17
 Identities = 67/73 (91%)
 Strand = Plus / Minus

                                                                         
Query: 49    ccggcaccgaggacgccgggatgaggaagtatatctggccgcgctccagctcggactccg 108
             ||||||| ||||| ||||||||||||||||| |||| |||||||||||||||||| ||||
Sbjct: 93839 ccggcacggaggaggccgggatgaggaagtagatctcgccgcgctccagctcggagtccg 93780

                          
Query: 109   gggagacgatgag 121
             | |||||||||||
Sbjct: 93779 gcgagacgatgag 93767



 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 69/79 (87%)
 Strand = Plus / Minus

                                                                         
Query: 145   agcacggcttgctcagcacgtggtttgngttancgganaggatctcgccggcggcgaccg 204
             ||||||||||||| || |||||||| | |||  |||  ||||||||||||||||||||||
Sbjct: 93728 agcacggcttgctgaggacgtggttggggttggcggcgaggatctcgccggcggcgaccg 93669

                                
Query: 205   gccggccgtactcctcgac 223
             | || ||||||||||||||
Sbjct: 93668 ggcgcccgtactcctcgac 93650
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 97.6 bits (49), Expect = 1e-17
 Identities = 67/73 (91%)
 Strand = Plus / Minus

                                                                           
Query: 49      ccggcaccgaggacgccgggatgaggaagtatatctggccgcgctccagctcggactccg 108
               ||||||| ||||| ||||||||||||||||| |||| |||||||||||||||||| ||||
Sbjct: 3772909 ccggcacggaggaggccgggatgaggaagtagatctcgccgcgctccagctcggagtccg 3772850

                            
Query: 109     gggagacgatgag 121
               | |||||||||||
Sbjct: 3772849 gcgagacgatgag 3772837



 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 69/79 (87%)
 Strand = Plus / Minus

                                                                           
Query: 145     agcacggcttgctcagcacgtggtttgngttancgganaggatctcgccggcggcgaccg 204
               ||||||||||||| || |||||||| | |||  |||  ||||||||||||||||||||||
Sbjct: 3772798 agcacggcttgctgaggacgtggttggggttggcggcgaggatctcgccggcggcgaccg 3772739

                                  
Query: 205     gccggccgtactcctcgac 223
               | || ||||||||||||||
Sbjct: 3772738 ggcgcccgtactcctcgac 3772720



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                       
Query: 66       gggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatga 120
                |||||||||||||| ||  |||||||||  |||||||| |||||||| |||||||
Sbjct: 23162678 gggatgaggaagtagatgcggccgcgcttgagctcggagtccggggacacgatga 23162624



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 188      ctcgccggcggcgaccggcc 207
                ||||||||||||||||||||
Sbjct: 23264489 ctcgccggcggcgaccggcc 23264508
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>ref|NM_184511.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 513

 Score = 81.8 bits (41), Expect = 8e-13
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                       
Query: 66  gggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatgagtatc 125
           |||||||||||||| |||| ||||||||||||||| |||||||| || ||||||||||||
Sbjct: 251 gggatgaggaagtagatctcgccgcgctccagctccgactccggcgacacgatgagtatc 192

            
Query: 126 c 126
           |
Sbjct: 191 c 191
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 81.8 bits (41), Expect = 8e-13
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                           
Query: 66      gggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatgagtatc 125
               |||||||||||||| |||| ||||||||||||||| |||||||| || ||||||||||||
Sbjct: 3375843 gggatgaggaagtagatctcgccgcgctccagctccgactccggcgacacgatgagtatc 3375784

                
Query: 126     c 126
               |
Sbjct: 3375783 c 3375783



 Score = 46.1 bits (23), Expect = 0.046
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                       
Query: 66       gggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatga 120
                |||||||||||||| ||  |||||||||  |||||||| || || ||||||||||
Sbjct: 35372536 gggatgaggaagtagatgcggccgcgcttgagctcggagtcgggcgagacgatga 35372590



 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 189     tcgccggcggcgaccggccgg 209
               |||||||||||||||||||||
Sbjct: 6395837 tcgccggcggcgaccggccgg 6395817



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 187      tctcgccggcggcgaccggc 206
                ||||||||||||||||||||
Sbjct: 20208883 tctcgccggcggcgaccggc 20208902
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>dbj|AP003301.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0701D05
          Length = 172161

 Score = 81.8 bits (41), Expect = 8e-13
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                         
Query: 66    gggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatgagtatc 125
             |||||||||||||| |||| ||||||||||||||| |||||||| || ||||||||||||
Sbjct: 54213 gggatgaggaagtagatctcgccgcgctccagctccgactccggcgacacgatgagtatc 54154

              
Query: 126   c 126
             |
Sbjct: 54153 c 54153
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>ref|NM_184654.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 438

 Score = 71.9 bits (36), Expect = 8e-10
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                       
Query: 63  gccgggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatgagt 122
           ||||||||||||||||| |||| ||||||||||||||  |||||||| || |||||| ||
Sbjct: 233 gccgggatgaggaagtagatctcgccgcgctccagcttcgactccggcgacacgatgtgt 174

               
Query: 123 atcc 126
           ||||
Sbjct: 173 atcc 170
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 71.9 bits (36), Expect = 8e-10
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                            
Query: 63       gccgggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatgagt 122
                ||||||||||||||||| |||| ||||||||||||||  |||||||| || |||||| ||
Sbjct: 18460224 gccgggatgaggaagtagatctcgccgcgctccagcttcgactccggcgacacgatgtgt 18460165

                    
Query: 123      atcc 126
                ||||
Sbjct: 18460164 atcc 18460161
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 71.9 bits (36), Expect = 8e-10
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                            
Query: 63       gccgggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatgagt 122
                ||||||||||||||||| |||| ||||||||||||||  |||||||| || |||||| ||
Sbjct: 18454265 gccgggatgaggaagtagatctcgccgcgctccagcttcgactccggcgacacgatgtgt 18454206

                    
Query: 123      atcc 126
                ||||
Sbjct: 18454205 atcc 18454202
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>gb|AC097367.3| Oryza sativa chromosome 3 BAC OSJNBa0051C19 genomic sequence, complete
             sequence
          Length = 90673

 Score = 71.9 bits (36), Expect = 8e-10
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                         
Query: 63    gccgggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatgagt 122
             ||||||||||||||||| |||| ||||||||||||||  |||||||| || |||||| ||
Sbjct: 20991 gccgggatgaggaagtagatctcgccgcgctccagcttcgactccggcgacacgatgtgt 21050

                 
Query: 123   atcc 126
             ||||
Sbjct: 21051 atcc 21054
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>ref|XM_474003.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 480

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                       
Query: 63  gccgggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatgagt 122
           ||||||||||||||||| |||| ||||| ||||||||  |||||||| || |||||| ||
Sbjct: 209 gccgggatgaggaagtagatctcgccgcactccagcttcgactccggcgacacgatgtgt 268

               
Query: 123 atcc 126
           ||||
Sbjct: 269 atcc 272
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>emb|AL606650.5|OSJN00097 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0015D13,
             complete sequence
          Length = 127135

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                         
Query: 63    gccgggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatgagt 122
             ||||||||||||||||| |||| ||||| ||||||||  |||||||| || |||||| ||
Sbjct: 13271 gccgggatgaggaagtagatctcgccgcactccagcttcgactccggcgacacgatgtgt 13212

                 
Query: 123   atcc 126
             ||||
Sbjct: 13211 atcc 13208
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                            
Query: 63       gccgggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatgagt 122
                ||||||||||||||||| |||| ||||| ||||||||  |||||||| || |||||| ||
Sbjct: 32117582 gccgggatgaggaagtagatctcgccgcactccagcttcgactccggcgacacgatgtgt 32117523

                    
Query: 123      atcc 126
                ||||
Sbjct: 32117522 atcc 32117519
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>dbj|AK108022.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-136-A04, full
           insert sequence
          Length = 702

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                       
Query: 63  gccgggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatgagt 122
           ||||||||||||||||| |||| ||||| ||||||||  |||||||| || |||||| ||
Sbjct: 383 gccgggatgaggaagtagatctcgccgcactccagcttcgactccggcgacacgatgtgt 324

               
Query: 123 atcc 126
           ||||
Sbjct: 323 atcc 320
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>emb|AL732334.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0323C08, complete
             sequence
          Length = 94903

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                         
Query: 63    gccgggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatgagt 122
             ||||||||||||||||| |||| ||||| ||||||||  |||||||| || |||||| ||
Sbjct: 89218 gccgggatgaggaagtagatctcgccgcactccagcttcgactccggcgacacgatgtgt 89159

                 
Query: 123   atcc 126
             ||||
Sbjct: 89158 atcc 89155
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>emb|AL732336.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0105C05,
           complete sequence
          Length = 62215

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                       
Query: 63  gccgggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatgagt 122
           ||||||||||||||||| |||| ||||| ||||||||  |||||||| || |||||| ||
Sbjct: 979 gccgggatgaggaagtagatctcgccgcactccagcttcgactccggcgacacgatgtgt 920

               
Query: 123 atcc 126
           ||||
Sbjct: 919 atcc 916
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>emb|AL662988.4|OSJN00186 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089N06,
              complete sequence
          Length = 141752

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                          
Query: 63     gccgggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatgagt 122
              ||||||||||||||||| |||| ||||| ||||||||  |||||||| || |||||| ||
Sbjct: 138289 gccgggatgaggaagtagatctcgccgcactccagcttcgactccggcgacacgatgtgt 138230

                  
Query: 123    atcc 126
              ||||
Sbjct: 138229 atcc 138226
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>gb|AC135568.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0078F08, complete sequence
          Length = 165440

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 56/64 (87%), Gaps = 1/64 (1%)
 Strand = Plus / Minus

                                                                         
Query: 63    gccgggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatgagt 122
             ||||||||||||||||| |||| |||| |||||||||  |||||||| || |||||| ||
Sbjct: 70127 gccgggatgaggaagtagatctcgccg-gctccagcttcgactccggcgacacgatgtgt 70069

                 
Query: 123   atcc 126
             ||||
Sbjct: 70068 atcc 70065
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 56/64 (87%), Gaps = 1/64 (1%)
 Strand = Plus / Minus

                                                                            
Query: 63       gccgggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatgagt 122
                ||||||||||||||||| |||| |||| |||||||||  |||||||| || |||||| ||
Sbjct: 18490812 gccgggatgaggaagtagatctcgccg-gctccagcttcgactccggcgacacgatgtgt 18490754

                    
Query: 123      atcc 126
                ||||
Sbjct: 18490753 atcc 18490750



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 187      tctcgccggcggcgaccggc 206
                ||||||||||||||||||||
Sbjct: 27146909 tctcgccggcggcgaccggc 27146890



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 187      tctcgccggcggcgaccggc 206
                ||||||||||||||||||||
Sbjct: 12115025 tctcgccggcggcgaccggc 12115044
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 56/64 (87%), Gaps = 1/64 (1%)
 Strand = Plus / Minus

                                                                            
Query: 63       gccgggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatgagt 122
                ||||||||||||||||| |||| |||| |||||||||  |||||||| || |||||| ||
Sbjct: 18650213 gccgggatgaggaagtagatctcgccg-gctccagcttcgactccggcgacacgatgtgt 18650155

                    
Query: 123      atcc 126
                ||||
Sbjct: 18650154 atcc 18650151



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 187      tctcgccggcggcgaccggc 206
                ||||||||||||||||||||
Sbjct: 27473962 tctcgccggcggcgaccggc 27473943



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 187      tctcgccggcggcgaccggc 206
                ||||||||||||||||||||
Sbjct: 12194332 tctcgccggcggcgaccggc 12194351
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>gb|AC135924.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0486C01,
             complete sequence
          Length = 146432

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                    
Query: 66    gggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatga 120
             |||||||||||||| ||  |||||||||  |||||||| |||||||| |||||||
Sbjct: 94453 gggatgaggaagtagatgcggccgcgcttgagctcggagtccggggacacgatga 94399
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>dbj|AK109305.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-E04, full
           insert sequence
          Length = 744

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                  
Query: 66  gggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatga 120
           |||||||||||||| ||  |||||||||  |||||||| |||||||| |||||||
Sbjct: 378 gggatgaggaagtagatgcggccgcgcttgagctcggagtccggggacacgatga 324
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>ref|NM_190413.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 516

 Score = 46.1 bits (23), Expect = 0.046
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                  
Query: 66  gggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatga 120
           |||||||||||||| ||  |||||||||  |||||||| || || ||||||||||
Sbjct: 257 gggatgaggaagtagatgcggccgcgcttgagctcggagtcgggcgagacgatga 203
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>dbj|AP003315.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0439E11
          Length = 146083

 Score = 46.1 bits (23), Expect = 0.046
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                     
Query: 66     gggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatga 120
              |||||||||||||| ||  |||||||||  |||||||| || || ||||||||||
Sbjct: 136397 gggatgaggaagtagatgcggccgcgcttgagctcggagtcgggcgagacgatga 136451
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>dbj|AK111090.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-175-G01, full
           insert sequence
          Length = 894

 Score = 46.1 bits (23), Expect = 0.046
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                  
Query: 66  gggatgaggaagtatatctggccgcgctccagctcggactccggggagacgatga 120
           |||||||||||||| ||  |||||||||  |||||||| || || ||||||||||
Sbjct: 350 gggatgaggaagtagatgcggccgcgcttgagctcggagtcgggcgagacgatga 296
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 134     gacgccctgcgagcacggcttgctca 159
               |||||||| |||||||||||||||||
Sbjct: 3978650 gacgcccttcgagcacggcttgctca 3978625
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>dbj|AP002861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0665D10
          Length = 134967

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 189   tcgccggcggcgaccggccgg 209
             |||||||||||||||||||||
Sbjct: 18232 tcgccggcggcgaccggccgg 18212
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>dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0515G01
          Length = 175072

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 189    tcgccggcggcgaccggccgg 209
              |||||||||||||||||||||
Sbjct: 166903 tcgccggcggcgaccggccgg 166883
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>ref|XM_482849.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 888

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 191 gccggcggcgaccggccggc 210
           ||||||||||||||||||||
Sbjct: 784 gccggcggcgaccggccggc 803
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>gb|AC148235.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0036H01,
             complete sequence
          Length = 182504

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 187   tctcgccggcggcgaccggc 206
             ||||||||||||||||||||
Sbjct: 53047 tctcgccggcggcgaccggc 53028
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>gb|AC144743.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0009H09,
             complete sequence
          Length = 148740

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   ctcgccggcggcgaccggcc 207
             ||||||||||||||||||||
Sbjct: 88546 ctcgccggcggcgaccggcc 88565
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>gb|AC145395.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0047M04, complete sequence
          Length = 109523

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 187   tctcgccggcggcgaccggc 206
             ||||||||||||||||||||
Sbjct: 97962 tctcgccggcggcgaccggc 97943
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>gb|AC074196.14| Oryza sativa chromosome 10 BAC OSJNBa0040D23 genomic sequence, complete
             sequence
          Length = 134102

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 186   atctcgccggcggcgaccgg 205
             ||||||||||||||||||||
Sbjct: 55521 atctcgccggcggcgaccgg 55540
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>tpg|BK000940.1| TPA: TPA_inf: Oryza sativa transposon Rim2-M332, complete sequence
          Length = 14546

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 187  tctcgccggcggcgaccggc 206
            ||||||||||||||||||||
Sbjct: 8632 tctcgccggcggcgaccggc 8651
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>gb|AC151987.4| Mus musculus BAC clone RP23-356C20 from chromosome 17, complete sequence
          Length = 245262

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 26     gccggtcttcttcttcctct 45
              ||||||||||||||||||||
Sbjct: 104712 gccggtcttcttcttcctct 104693
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 190    cgccggcggcgaccggccgg 209
              ||||||||||||||||||||
Sbjct: 950649 cgccggcggcgaccggccgg 950668
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 186      atctcgccggcggcgaccgg 205
                ||||||||||||||||||||
Sbjct: 20415373 atctcgccggcggcgaccgg 20415392
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 191      gccggcggcgaccggccggc 210
                ||||||||||||||||||||
Sbjct: 22920467 gccggcggcgaccggccggc 22920448
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>dbj|AP004232.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0051H17
          Length = 187471

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 187    tctcgccggcggcgaccggc 206
              ||||||||||||||||||||
Sbjct: 115261 tctcgccggcggcgaccggc 115280
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>gb|AF497482.1| Micromonospora echinospora calicheamicin biosynthetic locus, complete
             sequence
          Length = 90348

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   cggcggcgaccggccggccg 212
             ||||||||||||||||||||
Sbjct: 21679 cggcggcgaccggccggccg 21660
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>dbj|AP006461.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0104B02
          Length = 169588

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 191   gccggcggcgaccggccggc 210
             ||||||||||||||||||||
Sbjct: 94305 gccggcggcgaccggccggc 94286
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>dbj|AK073548.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044C05, full
           insert sequence
          Length = 1078

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 188 ctcgccggcggcgaccggcc 207
           ||||||||||||||||||||
Sbjct: 796 ctcgccggcggcgaccggcc 777
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>dbj|AK068850.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169H09, full
           insert sequence
          Length = 3543

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 186 atctcgccggcggcgaccgg 205
           ||||||||||||||||||||
Sbjct: 37  atctcgccggcggcgaccgg 18
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 186      atctcgccggcggcgaccgg 205
                ||||||||||||||||||||
Sbjct: 20426645 atctcgccggcggcgaccgg 20426664


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,139,858
Number of Sequences: 3902068
Number of extensions: 2139858
Number of successful extensions: 151961
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 149477
Number of HSP's gapped (non-prelim): 2487
length of query: 223
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 201
effective length of database: 17,147,199,772
effective search space: 3446587154172
effective search space used: 3446587154172
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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