ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags16e14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X67960.1|HVGRP94HO H.vulgare mRNA for GRP94 homologue 509 e-141
2gb|BT016887.1| Zea mays clone Contig720 mRNA sequence 246 6e-62
3gb|BT024056.1| Zea mays clone EL01N0440A11 mRNA sequence 238 1e-59
4gb|AY103537.1| Zea mays PCO098403 mRNA sequence 230 4e-57
5gb|BT018707.1| Zea mays clone EL01N0516A06.d mRNA sequence 226 6e-56
6gb|BT018144.1| Zea mays clone EL01N0555C04.c mRNA sequence 226 6e-56
7dbj|AK119605.1| Oryza sativa (japonica cultivar-group) cDNA clon... 214 2e-52
8dbj|AK102478.1| Oryza sativa (japonica cultivar-group) cDNA clon... 214 2e-52
9dbj|AK062023.1| Oryza sativa (japonica cultivar-group) cDNA clon... 214 2e-52
10dbj|AB037681.1| Oryza sativa HSP90 mRNA for heat shock protein 9... 206 5e-50
11gb|AC091774.7| Oryza sativa chromosome 6 BAC OJ1540_H01 genomic ... 170 3e-39
12dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 170 3e-39
13dbj|AP003769.3| Oryza sativa (japonica cultivar-group) genomic D... 170 3e-39
14dbj|AP003614.2| Oryza sativa (japonica cultivar-group) genomic D... 170 3e-39
15gb|AC165972.4| Mus musculus BAC clone RP23-87D12 from chromosome... 48 0.029
16dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, comple... 44 0.45
17ref|XM_689464.1| PREDICTED: Danio rerio similar to CG8779-PA (LO... 44 0.45
18gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 44 0.45
19emb|AL928800.5| Zebrafish DNA sequence from clone CH211-233G21 i... 44 0.45
20gb|CP000087.1| Rickettsia bellii RML369-C, complete genome 42 1.8
21emb|BX842647.1| Bdellovibrio bacteriovorus complete genome, stra... 42 1.8
22gb|AC159477.9| Mus musculus 10 BAC RP23-95I8 (Roswell Park Cance... 42 1.8
23ref|NR_002839.1| Mus musculus distal-less homeobox 6, antisense ... 42 1.8
24ref|XM_318677.2| Anopheles gambiae str. PEST ENSANGP00000004639 ... 42 1.8
25gb|AC147219.5| Mus musculus BAC clone RP23-37K18 from 18, comple... 42 1.8
26gb|AF022079.1|AF022079 Mus musculus antisense Dlx-6 mRNA, partia... 42 1.8
27gb|AC122240.4| Mus musculus BAC clone RP23-145L9 from 6, complet... 42 1.8
28gb|M60499.1|HUMPROFILC Human profilaggrin mRNA, 5' end 42 1.8
29ref|XM_598073.2| PREDICTED: Bos taurus similar to SLIT-ROBO Rho ... 40 7.0
30gb|AC146297.3| Mus musculus BAC clone RP23-260F15 from chromosom... 40 7.0
31gb|AC125049.3| Mus musculus BAC clone RP23-367C15 from chromosom... 40 7.0
32gb|AC115355.3| Mus musculus BAC clone RP23-14J16 from 9, complet... 40 7.0
33emb|AL713921.15| Mouse DNA sequence from clone RP23-475A8 on chr... 40 7.0
34gb|AC007656.2| Homo sapiens 12q22 BAC RPCI11-534P6 (Rowswell Par... 40 7.0
35gb|AC104820.4| Homo sapiens BAC clone RP11-739A13 from 2, comple... 40 7.0
36dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 7.0
37dbj|AP004735.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
38dbj|AP004734.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
39gb|AC002460.1|AC002460 Human BAC clone CTB-191D16, complete sequ... 40 7.0
40emb|BX255893.5| Zebrafish DNA sequence from clone CH211-272H10 i... 40 7.0
41dbj|AP000785.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 7.0
42gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 7.0
43emb|AL807382.8| Mouse DNA sequence from clone RP23-434B7 on chro... 40 7.0 
>emb|X67960.1|HVGRP94HO H.vulgare mRNA for GRP94 homologue
          Length = 2682

 Score =  509 bits (257), Expect = e-141
 Identities = 264/265 (99%), Gaps = 1/265 (0%)
 Strand = Plus / Minus

                                                                        
Query: 30   tgcacgctaattc-aactagctagggtatcgtcattaaacaagaaactaggtacagtagt 88
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2682 tgcacgctaattccaactagctagggtatcgtcattaaacaagaaactaggtacagtagt 2623

                                                                        
Query: 89   acattacacggacaaaaccccccgtatcacgatcgatgattaatcgtcttccgcgcggta 148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2622 acattacacggacaaaaccccccgtatcacgatcgatgattaatcgtcttccgcgcggta 2563

                                                                        
Query: 149  aaaatggacgtccctcaaaaccatcacatttccagtccaacatttctttctaatgaaatg 208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2562 aaaatggacgtccctcaaaaccatcacatttccagtccaacatttctttctaatgaaatg 2503

                                                                        
Query: 209  aaagctaaatgggcgatatgagcaactacagctcgtccttgtcgtactgctcgtgttccg 268
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2502 aaagctaaatgggcgatatgagcaactacagctcgtccttgtcgtactgctcgtgttccg 2443

                                     
Query: 269  gctcctccgcctcctgcttggccga 293
            |||||||||||||||||||||||||
Sbjct: 2442 gctcctccgcctcctgcttggccga 2418



 Score =  349 bits (176), Expect = 6e-93
 Identities = 176/176 (100%)
 Strand = Plus / Minus

                                                                        
Query: 340  acggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 399
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2371 acggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 2312

                                                                        
Query: 400  aagtccttggggtccggcaggttgaacccgctctccatcagcgccgtctggtacaccagc 459
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2311 aagtccttggggtccggcaggttgaacccgctctccatcagcgccgtctggtacaccagc 2252

                                                                    
Query: 460  ctcgccgtctgcttcaggccctcgctgtcgctgtcctgggcgaccttgtcgcggag 515
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2251 ctcgccgtctgcttcaggccctcgctgtcgctgtcctgggcgaccttgtcgcggag 2196
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>gb|BT016887.1| Zea mays clone Contig720 mRNA sequence
          Length = 719

 Score =  246 bits (124), Expect = 6e-62
 Identities = 163/176 (92%)
 Strand = Plus / Plus

                                                                       
Query: 340 acggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 399
           ||||| |||||||||||||||||||||||||| |||||||||  ||||||||| ||||| 
Sbjct: 339 acggccgcgtcggggctcaggtccaggctcttgtgcaccgacttgtagatgctggacgcg 398

                                                                       
Query: 400 aagtccttggggtccggcaggttgaacccgctctccatcagcgccgtctggtacaccagc 459
           || ||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 399 aactccttggggtcggggaggttgaacccgctctccatcagggccgtctggtacaccagc 458

                                                                   
Query: 460 ctcgccgtctgcttcaggccctcgctgtcgctgtcctgggcgaccttgtcgcggag 515
           |||||||||||||||||  ||||||| |||||||||||||||||||||||||||||
Sbjct: 459 ctcgccgtctgcttcagctcctcgctctcgctgtcctgggcgaccttgtcgcggag 514
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>gb|BT024056.1| Zea mays clone EL01N0440A11 mRNA sequence
          Length = 2511

 Score =  238 bits (120), Expect = 1e-59
 Identities = 162/176 (92%)
 Strand = Plus / Minus

                                                                        
Query: 340  acggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 399
            ||||| |||||||||||||||||||||||||| |||||||||  ||||||||| ||||| 
Sbjct: 2172 acggccgcgtcggggctcaggtccaggctcttgtgcaccgacttgtagatgctggacgcg 2113

                                                                        
Query: 400  aagtccttggggtccggcaggttgaacccgctctccatcagcgccgtctggtacaccagc 459
            || ||||||||||| || ||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 2112 aactccttggggtcggggagggtgaacccgctctccatcagggccgtctggtacaccagc 2053

                                                                    
Query: 460  ctcgccgtctgcttcaggccctcgctgtcgctgtcctgggcgaccttgtcgcggag 515
            |||||||||||||||||  ||||||| |||||||||||||||||||||||||||||
Sbjct: 2052 ctcgccgtctgcttcagctcctcgctctcgctgtcctgggcgaccttgtcgcggag 1997
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>gb|AY103537.1| Zea mays PCO098403 mRNA sequence
          Length = 2806

 Score =  230 bits (116), Expect = 4e-57
 Identities = 161/176 (91%)
 Strand = Plus / Minus

                                                                        
Query: 340  acggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 399
            ||||| |||||||||||||||||||||||||| |||||||||  ||||||||| ||||| 
Sbjct: 2402 acggccgcgtcggggctcaggtccaggctcttgtgcaccgacttgtagatgctggacgcg 2343

                                                                        
Query: 400  aagtccttggggtccggcaggttgaacccgctctccatcagcgccgtctggtacaccagc 459
            || ||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2342 aactccttggggtcggggaggttgaacccgctctccatcagggccgtctggtacaccagc 2283

                                                                    
Query: 460  ctcgccgtctgcttcaggccctcgctgtcgctgtcctgggcgaccttgtcgcggag 515
            |||||||||||||||||  ||||||| ||  |||||||||||||||||||||||||
Sbjct: 2282 ctcgccgtctgcttcagctcctcgctctcattgtcctgggcgaccttgtcgcggag 2227



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 233  actacagctcgtccttgtcg 252
            ||||||||||||||||||||
Sbjct: 2503 actacagctcgtccttgtcg 2484
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>gb|BT018707.1| Zea mays clone EL01N0516A06.d mRNA sequence
          Length = 1546

 Score =  226 bits (114), Expect = 6e-56
 Identities = 156/170 (91%)
 Strand = Plus / Minus

                                                                        
Query: 346  gcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgcaaagtcc 405
            |||||||||||||||||||||| |||||||||||||  ||||||||| ||||| || |||
Sbjct: 1240 gcgtcggggctcaggtccaggcccttctgcaccgacttgtagatgctggacgcgaactcc 1181

                                                                        
Query: 406  ttggggtccggcaggttgaacccgctctccatcagcgccgtctggtacaccagcctcgcc 465
            |||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1180 ttggggtcggggaggttgaacccgctctccatcagggccgtctggtacaccagcctcgcc 1121

                                                              
Query: 466  gtctgcttcaggccctcgctgtcgctgtcctgggcgaccttgtcgcggag 515
            || ||||||||  ||||||| ||| |||||||||||||||||||||||||
Sbjct: 1120 gtgtgcttcagctcctcgctctcgttgtcctgggcgaccttgtcgcggag 1071
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>gb|BT018144.1| Zea mays clone EL01N0555C04.c mRNA sequence
          Length = 1544

 Score =  226 bits (114), Expect = 6e-56
 Identities = 156/170 (91%)
 Strand = Plus / Minus

                                                                        
Query: 346  gcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgcaaagtcc 405
            |||||||||||||||||||||| |||||||||||||  ||||||||| ||||| || |||
Sbjct: 1226 gcgtcggggctcaggtccaggcccttctgcaccgacttgtagatgctggacgcgaactcc 1167

                                                                        
Query: 406  ttggggtccggcaggttgaacccgctctccatcagcgccgtctggtacaccagcctcgcc 465
            |||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1166 ttggggtcggggaggttgaacccgctctccatcagggccgtctggtacaccagcctcgcc 1107

                                                              
Query: 466  gtctgcttcaggccctcgctgtcgctgtcctgggcgaccttgtcgcggag 515
            || ||||||||  ||||||| ||| |||||||||||||||||||||||||
Sbjct: 1106 gtgtgcttcagctcctcgctctcgttgtcctgggcgaccttgtcgcggag 1057
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>dbj|AK119605.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-F01, full
            insert sequence
          Length = 1944

 Score =  214 bits (108), Expect = 2e-52
 Identities = 159/176 (90%)
 Strand = Plus / Minus

                                                                        
Query: 340  acggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 399
            ||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| || || 
Sbjct: 1656 acggccgcgtcggggctcaggtcaaggctcttctgcaccgacctgtagatgctggaggcg 1597

                                                                        
Query: 400  aagtccttggggtccggcaggttgaacccgctctccatcagcgccgtctggtacaccagc 459
            ||||||||||| || || |||||||| ||||||||||| || ||||||||||||||||||
Sbjct: 1596 aagtccttgggatcaggaaggttgaagccgctctccatgagggccgtctggtacaccagc 1537

                                                                    
Query: 460  ctcgccgtctgcttcaggccctcgctgtcgctgtcctgggcgaccttgtcgcggag 515
             ||||||||||||||| || |||||| ||||||||||||||||||||||| |||||
Sbjct: 1536 ttcgccgtctgcttcaagctctcgctctcgctgtcctgggcgaccttgtcacggag 1481



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 148  aaaaatggacgtccctcaaaaccatcacattt 179
            ||||||||||||||||| ||||||||||||||
Sbjct: 1848 aaaaatggacgtccctcgaaaccatcacattt 1817
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>dbj|AK102478.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094I10, full
            insert sequence
          Length = 2708

 Score =  214 bits (108), Expect = 2e-52
 Identities = 159/176 (90%)
 Strand = Plus / Minus

                                                                        
Query: 340  acggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 399
            ||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| || || 
Sbjct: 2416 acggccgcgtcggggctcaggtcaaggctcttctgcaccgacctgtagatgctggaggcg 2357

                                                                        
Query: 400  aagtccttggggtccggcaggttgaacccgctctccatcagcgccgtctggtacaccagc 459
            ||||||||||| || || |||||||| ||||||||||| || ||||||||||||||||||
Sbjct: 2356 aagtccttgggatcaggaaggttgaagccgctctccatgagggccgtctggtacaccagc 2297

                                                                    
Query: 460  ctcgccgtctgcttcaggccctcgctgtcgctgtcctgggcgaccttgtcgcggag 515
             ||||||||||||||| || |||||| ||||||||||||||||||||||| |||||
Sbjct: 2296 ttcgccgtctgcttcaagctctcgctctcgctgtcctgggcgaccttgtcacggag 2241



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 148  aaaaatggacgtccctcaaaaccatcacattt 179
            ||||||||||||||||| ||||||||||||||
Sbjct: 2608 aaaaatggacgtccctcgaaaccatcacattt 2577
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>dbj|AK062023.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-G02, full
            insert sequence
          Length = 2026

 Score =  214 bits (108), Expect = 2e-52
 Identities = 159/176 (90%)
 Strand = Plus / Minus

                                                                        
Query: 340  acggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 399
            ||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| || || 
Sbjct: 1738 acggccgcgtcggggctcaggtcaaggctcttctgcaccgacctgtagatgctggaggcg 1679

                                                                        
Query: 400  aagtccttggggtccggcaggttgaacccgctctccatcagcgccgtctggtacaccagc 459
            ||||||||||| || || |||||||| ||||||||||| || ||||||||||||||||||
Sbjct: 1678 aagtccttgggatcaggaaggttgaagccgctctccatgagggccgtctggtacaccagc 1619

                                                                    
Query: 460  ctcgccgtctgcttcaggccctcgctgtcgctgtcctgggcgaccttgtcgcggag 515
             ||||||||||||||| || |||||| ||||||||||||||||||||||| |||||
Sbjct: 1618 ttcgccgtctgcttcaagctctcgctctcgctgtcctgggcgaccttgtcacggag 1563



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 148  aaaaatggacgtccctcaaaaccatcacattt 179
            ||||||||||||||||| ||||||||||||||
Sbjct: 1930 aaaaatggacgtccctcgaaaccatcacattt 1899
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>dbj|AB037681.1| Oryza sativa HSP90 mRNA for heat shock protein 90, complete cds
          Length = 2731

 Score =  206 bits (104), Expect = 5e-50
 Identities = 158/176 (89%)
 Strand = Plus / Minus

                                                                        
Query: 340  acggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 399
            ||||| ||||||||||||||||| ||||||||||||||||||| |||||||||  | || 
Sbjct: 2410 acggccgcgtcggggctcaggtcaaggctcttctgcaccgacctgtagatgctgaaggcg 2351

                                                                        
Query: 400  aagtccttggggtccggcaggttgaacccgctctccatcagcgccgtctggtacaccagc 459
            ||||||||||| || || |||||||| ||||||||||| || ||||||||||||||||||
Sbjct: 2350 aagtccttgggatcagggaggttgaagccgctctccatgagggccgtctggtacaccagc 2291

                                                                    
Query: 460  ctcgccgtctgcttcaggccctcgctgtcgctgtcctgggcgaccttgtcgcggag 515
             ||||||||||||||| || |||||| ||||||||||||||||||||||| |||||
Sbjct: 2290 ttcgccgtctgcttcaagctctcgctctcgctgtcctgggcgaccttgtcacggag 2235



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 148  aaaaatggacgtccctcaaaaccatcacattt 179
            ||||||||||||||||| ||||||||||||||
Sbjct: 2602 aaaaatggacgtccctcgaaaccatcacattt 2571
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>gb|AC091774.7| Oryza sativa chromosome 6 BAC OJ1540_H01 genomic sequence, complete
            sequence
          Length = 143507

 Score =  170 bits (86), Expect = 3e-39
 Identities = 131/146 (89%)
 Strand = Plus / Plus

                                                                        
Query: 340  acggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 399
            ||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| || || 
Sbjct: 9601 acggccgcgtcggggctcaggtcaaggctcttctgcaccgacctgtagatgctggaggcg 9660

                                                                        
Query: 400  aagtccttggggtccggcaggttgaacccgctctccatcagcgccgtctggtacaccagc 459
            ||||||||||| || || |||||||| ||||||||||| || ||||||||||||||||||
Sbjct: 9661 aagtccttgggatcaggaaggttgaagccgctctccatgagggccgtctggtacaccagc 9720

                                      
Query: 460  ctcgccgtctgcttcaggccctcgct 485
             ||||||||||||||| || ||||||
Sbjct: 9721 ttcgccgtctgcttcaagctctcgct 9746



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                            
Query: 148  aaaaatggacgtccctcaaaaccatcacattt 179
            ||||||||||||||||| ||||||||||||||
Sbjct: 9409 aaaaatggacgtccctcgaaaccatcacattt 9440



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                         
Query: 487  tcgctgtcctgggcgaccttgtcgcggag 515
            ||||||||||||||||||||||| |||||
Sbjct: 9854 tcgctgtcctgggcgaccttgtcacggag 9882
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  170 bits (86), Expect = 3e-39
 Identities = 131/146 (89%)
 Strand = Plus / Plus

                                                                            
Query: 340      acggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 399
                ||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| || || 
Sbjct: 29928895 acggccgcgtcggggctcaggtcaaggctcttctgcaccgacctgtagatgctggaggcg 29928954

                                                                            
Query: 400      aagtccttggggtccggcaggttgaacccgctctccatcagcgccgtctggtacaccagc 459
                ||||||||||| || || |||||||| ||||||||||| || ||||||||||||||||||
Sbjct: 29928955 aagtccttgggatcaggaaggttgaagccgctctccatgagggccgtctggtacaccagc 29929014

                                          
Query: 460      ctcgccgtctgcttcaggccctcgct 485
                 ||||||||||||||| || ||||||
Sbjct: 29929015 ttcgccgtctgcttcaagctctcgct 29929040



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                                
Query: 148      aaaaatggacgtccctcaaaaccatcacattt 179
                ||||||||||||||||| ||||||||||||||
Sbjct: 29928703 aaaaatggacgtccctcgaaaccatcacattt 29928734



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                             
Query: 487      tcgctgtcctgggcgaccttgtcgcggag 515
                ||||||||||||||||||||||| |||||
Sbjct: 29929148 tcgctgtcctgggcgaccttgtcacggag 29929176



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 265      tccggctcctccgcctcctgcttggccg 292
                ||||||||||||||||||| ||| ||||
Sbjct: 15914667 tccggctcctccgcctcctccttcgccg 15914694
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>dbj|AP003769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0541C02
          Length = 150660

 Score =  170 bits (86), Expect = 3e-39
 Identities = 131/146 (89%)
 Strand = Plus / Plus

                                                                        
Query: 340  acggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 399
            ||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| || || 
Sbjct: 5043 acggccgcgtcggggctcaggtcaaggctcttctgcaccgacctgtagatgctggaggcg 5102

                                                                        
Query: 400  aagtccttggggtccggcaggttgaacccgctctccatcagcgccgtctggtacaccagc 459
            ||||||||||| || || |||||||| ||||||||||| || ||||||||||||||||||
Sbjct: 5103 aagtccttgggatcaggaaggttgaagccgctctccatgagggccgtctggtacaccagc 5162

                                      
Query: 460  ctcgccgtctgcttcaggccctcgct 485
             ||||||||||||||| || ||||||
Sbjct: 5163 ttcgccgtctgcttcaagctctcgct 5188



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                            
Query: 148  aaaaatggacgtccctcaaaaccatcacattt 179
            ||||||||||||||||| ||||||||||||||
Sbjct: 4851 aaaaatggacgtccctcgaaaccatcacattt 4882



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                         
Query: 487  tcgctgtcctgggcgaccttgtcgcggag 515
            ||||||||||||||||||||||| |||||
Sbjct: 5296 tcgctgtcctgggcgaccttgtcacggag 5324
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>dbj|AP003614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0481E08
          Length = 171965

 Score =  170 bits (86), Expect = 3e-39
 Identities = 131/146 (89%)
 Strand = Plus / Plus

                                                                          
Query: 340    acggcagcgtcggggctcaggtccaggctcttctgcaccgaccggtagatgctcgacgca 399
              ||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| || || 
Sbjct: 124408 acggccgcgtcggggctcaggtcaaggctcttctgcaccgacctgtagatgctggaggcg 124467

                                                                          
Query: 400    aagtccttggggtccggcaggttgaacccgctctccatcagcgccgtctggtacaccagc 459
              ||||||||||| || || |||||||| ||||||||||| || ||||||||||||||||||
Sbjct: 124468 aagtccttgggatcaggaaggttgaagccgctctccatgagggccgtctggtacaccagc 124527

                                        
Query: 460    ctcgccgtctgcttcaggccctcgct 485
               ||||||||||||||| || ||||||
Sbjct: 124528 ttcgccgtctgcttcaagctctcgct 124553



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                              
Query: 148    aaaaatggacgtccctcaaaaccatcacattt 179
              ||||||||||||||||| ||||||||||||||
Sbjct: 124216 aaaaatggacgtccctcgaaaccatcacattt 124247



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                           
Query: 487    tcgctgtcctgggcgaccttgtcgcggag 515
              ||||||||||||||||||||||| |||||
Sbjct: 124661 tcgctgtcctgggcgaccttgtcacggag 124689
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>gb|AC165972.4| Mus musculus BAC clone RP23-87D12 from chromosome 17, complete sequence
          Length = 199737

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                              
Query: 255    ctgctcgtgttccggctcctccgcctcctgct 286
              |||||| ||||||||||||||| |||||||||
Sbjct: 178788 ctgctcctgttccggctcctcctcctcctgct 178819
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>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome
          Length = 2685015

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 190     atttctttctaatgaaatgaaa 211
               ||||||||||||||||||||||
Sbjct: 1261169 atttctttctaatgaaatgaaa 1261148
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>ref|XM_689464.1| PREDICTED: Danio rerio similar to CG8779-PA (LOC566194), mRNA
          Length = 1213

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 3   ggcgcttctgactgaggaaacc 24
           ||||||||||||||||||||||
Sbjct: 83  ggcgcttctgactgaggaaacc 104
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 270     ctcctccgcctcctgcttggcc 291
               ||||||||||||||||||||||
Sbjct: 2035901 ctcctccgcctcctgcttggcc 2035922
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>emb|AL928800.5| Zebrafish DNA sequence from clone CH211-233G21 in linkage group 1,
             complete sequence
          Length = 153880

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 3     ggcgcttctgactgaggaaacc 24
             ||||||||||||||||||||||
Sbjct: 66918 ggcgcttctgactgaggaaacc 66939
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>gb|CP000087.1| Rickettsia bellii RML369-C, complete genome
          Length = 1522076

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 198     ctaatgaaatgaaagctaaat 218
               |||||||||||||||||||||
Sbjct: 1421262 ctaatgaaatgaaagctaaat 1421242
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>emb|BX842647.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 2/11
          Length = 346357

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 401    agtccttggggtccggcaggt 421
              |||||||||||||||||||||
Sbjct: 266763 agtccttggggtccggcaggt 266743
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>gb|AC159477.9| Mus musculus 10 BAC RP23-95I8 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 222553

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 196    ttctaatgaaatgaaagctaa 216
              |||||||||||||||||||||
Sbjct: 112594 ttctaatgaaatgaaagctaa 112614
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>ref|NR_002839.1| Mus musculus distal-less homeobox 6, antisense (Dlx6as) on chromosome
            6
          Length = 1351

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 268  ggctcctccgcctcctgcttg 288
            |||||||||||||||||||||
Sbjct: 1084 ggctcctccgcctcctgcttg 1064
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>ref|XM_318677.2| Anopheles gambiae str. PEST ENSANGP00000004639 (ENSANGG00000003636),
            partial mRNA
          Length = 3264

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 272  cctccgcctcctgcttggccg 292
            |||||||||||||||||||||
Sbjct: 1432 cctccgcctcctgcttggccg 1412
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>gb|AC147219.5| Mus musculus BAC clone RP23-37K18 from 18, complete sequence
          Length = 183177

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 167    aaccatcacatttccagtcca 187
              |||||||||||||||||||||
Sbjct: 132650 aaccatcacatttccagtcca 132630
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>gb|AF022079.1|AF022079 Mus musculus antisense Dlx-6 mRNA, partial sequence
          Length = 1351

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 268  ggctcctccgcctcctgcttg 288
            |||||||||||||||||||||
Sbjct: 1084 ggctcctccgcctcctgcttg 1064
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>gb|AC122240.4| Mus musculus BAC clone RP23-145L9 from 6, complete sequence
          Length = 211740

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 268    ggctcctccgcctcctgcttg 288
              |||||||||||||||||||||
Sbjct: 107299 ggctcctccgcctcctgcttg 107319
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>gb|M60499.1|HUMPROFILC Human profilaggrin mRNA, 5' end
          Length = 1496

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 478 ccctcgctgtcgctgtcctgg 498
           |||||||||||||||||||||
Sbjct: 349 ccctcgctgtcgctgtcctgg 329
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>ref|XM_598073.2| PREDICTED: Bos taurus similar to SLIT-ROBO Rho GTPase activating
            protein 2 (srGAP2) (Formin-binding protein 2)
            (LOC519843), partial mRNA
          Length = 2576

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 459  cctcgccgtctgcttcaggccctcgctg 486
            ||||||| |||||||| |||||||||||
Sbjct: 1086 cctcgccatctgcttcgggccctcgctg 1113
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>gb|AC146297.3| Mus musculus BAC clone RP23-260F15 from chromosome 9, complete sequence
          Length = 176549

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 73    aactaggtacagtagtacat 92
             ||||||||||||||||||||
Sbjct: 13547 aactaggtacagtagtacat 13528
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>gb|AC125049.3| Mus musculus BAC clone RP23-367C15 from chromosome 9, complete sequence
          Length = 211511

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    tcattaaacaagaaactagg 79
             ||||||||||||||||||||
Sbjct: 83603 tcattaaacaagaaactagg 83584
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>gb|AC115355.3| Mus musculus BAC clone RP23-14J16 from 9, complete sequence
          Length = 179362

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     aactaggtacagtagtacat 92
              ||||||||||||||||||||
Sbjct: 148078 aactaggtacagtagtacat 148059
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>emb|AL713921.15| Mouse DNA sequence from clone RP23-475A8 on chromosome 11 Contains a
              novel gene and a CpG island, complete sequence
          Length = 214065

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 468    ctgcttcaggccctcgctgt 487
              ||||||||||||||||||||
Sbjct: 175515 ctgcttcaggccctcgctgt 175534
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>gb|AC007656.2| Homo sapiens 12q22 BAC RPCI11-534P6 (Rowswell Park Cancer Institute
             Human BAC Library) complete sequence
          Length = 171236

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   aatgaaatgaaagctaaatg 219
             ||||||||||||||||||||
Sbjct: 60679 aatgaaatgaaagctaaatg 60698
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>gb|AC104820.4| Homo sapiens BAC clone RP11-739A13 from 2, complete sequence
          Length = 161786

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 198   ctaatgaaatgaaagctaaatggg 221
             ||||||||| ||||||||||||||
Sbjct: 22238 ctaatgaaaagaaagctaaatggg 22261
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 470     gcttcaggccctcgctgtcg 489
               ||||||||||||||||||||
Sbjct: 9004724 gcttcaggccctcgctgtcg 9004705



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 470     gcttcaggccctcgctgtcg 489
               ||||||||||||||||||||
Sbjct: 5172865 gcttcaggccctcgctgtcg 5172884
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>dbj|AP004735.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0031P18
          Length = 156535

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 265   tccggctcctccgcctcctgcttggccg 292
             ||||||||||||||||||| ||| ||||
Sbjct: 48116 tccggctcctccgcctcctccttcgccg 48143
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>dbj|AP004734.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0026P23
          Length = 180188

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 265    tccggctcctccgcctcctgcttggccg 292
              ||||||||||||||||||| ||| ||||
Sbjct: 127670 tccggctcctccgcctcctccttcgccg 127697
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>gb|AC002460.1|AC002460 Human BAC clone CTB-191D16, complete sequence
          Length = 174952

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 198   ctaatgaaatgaaagctaaa 217
             ||||||||||||||||||||
Sbjct: 56061 ctaatgaaatgaaagctaaa 56080
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>emb|BX255893.5| Zebrafish DNA sequence from clone CH211-272H10 in linkage group 4,
             complete sequence
          Length = 99176

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   catttccagtccaacatttc 194
             ||||||||||||||||||||
Sbjct: 21017 catttccagtccaacatttc 21036
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>dbj|AP000785.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-619A14, complete
             sequence
          Length = 126000

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 351   ggggctcaggtccaggctct 370
             ||||||||||||||||||||
Sbjct: 18841 ggggctcaggtccaggctct 18822
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 270     ctcctccgcctcctgcttgg 289
               ||||||||||||||||||||
Sbjct: 1682827 ctcctccgcctcctgcttgg 1682846
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>emb|AL807382.8| Mouse DNA sequence from clone RP23-434B7 on chromosome 4, complete
             sequence
          Length = 190179

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    aactaggtacagtagtacat 92
             ||||||||||||||||||||
Sbjct: 70193 aactaggtacagtagtacat 70212


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,386,712
Number of Sequences: 3902068
Number of extensions: 3386712
Number of successful extensions: 82780
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82514
Number of HSP's gapped (non-prelim): 266
length of query: 515
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 492
effective length of database: 17,143,297,704
effective search space: 8434502470368
effective search space used: 8434502470368
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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