ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags16e12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_477219.1| Oryza sativa (japonica cultivar-group), mRNA 216 7e-53
2ref|XM_506238.1| PREDICTED Oryza sativa (japonica cultivar-group... 216 7e-53
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 216 7e-53
4dbj|AP004340.5| Oryza sativa (japonica cultivar-group) genomic D... 216 7e-53
5dbj|AK098977.1| Oryza sativa (japonica cultivar-group) cDNA clon... 216 7e-53
6dbj|AK072205.1| Oryza sativa (japonica cultivar-group) cDNA clon... 216 7e-53
7gb|AY110370.1| Zea mays CL6577_1 mRNA sequence 147 6e-32
8gb|BT024117.1| Zea mays clone EL01N0509C07 mRNA sequence 107 5e-20
9ref|NM_001036429.1| Arabidopsis thaliana LCD1 (LOWER CELL DENSIT... 64 7e-07
10ref|NM_179956.1| Arabidopsis thaliana LCD1 (LOWER CELL DENSITY 1... 64 7e-07
11ref|NM_179957.3| Arabidopsis thaliana LCD1 (LOWER CELL DENSITY 1... 64 7e-07
12gb|AY081345.1| Arabidopsis thaliana unknown protein (At2g37860) ... 64 7e-07
13gb|AC007661.2|AC007661 Arabidopsis thaliana chromosome II sectio... 64 7e-07
14emb|CR388185.10| Zebrafish DNA sequence from clone CH211-256G21 ... 44 0.62
15gb|AC093339.17| Mus musculus chromosome 19, clone RP23-5G6, comp... 42 2.4
16gb|AC165273.2| Mus musculus BAC clone RP24-267I1 from chromosome... 42 2.4
17gb|AC102440.12| Mus musculus chromosome 1, clone RP24-146C18, co... 42 2.4
18gb|AC123073.4| Mus musculus BAC clone RP23-111E4 from 6, complet... 42 2.4
19gb|AC119228.10| Mus musculus chromosome 19, clone RP24-209J17, c... 42 2.4
20emb|AL133286.9| Human DNA sequence from clone RP4-580N22 on chro... 42 2.4
21gb|AC163035.2| Mus musculus BAC clone RP23-301L2 from chromosome... 42 2.4
22gb|AC013402.9| Homo sapiens BAC clone RP11-134N15 from 2, comple... 42 2.4
23emb|CT030176.18| Mouse DNA sequence from clone RP23-142L17 on ch... 42 2.4
24gb|AC147235.3| Mus musculus BAC clone RP23-353B7 from 6, complet... 42 2.4
25emb|AL844590.3| Mouse DNA sequence from clone RP23-335P15 on chr... 42 2.4
26gb|AY791291.1| Homo sapiens ribosomal protein S3 (RPS3) gene, co... 40 9.6
27gb|AC112938.11| Mus musculus chromosome 5, clone RP24-72E12, com... 40 9.6
28gb|AC164553.2| Mus musculus BAC clone RP23-361L12 from chromosom... 40 9.6
29gb|AC124580.5| Mus musculus BAC clone RP23-114G7 from chromosome... 40 9.6
30emb|BX248358.1| Corynebacterium diphtheriae gravis NCTC13129, co... 40 9.6
31gb|AC122713.2| Homo sapiens chromosome 5 clone RP11-39H3, comple... 40 9.6
32emb|CR610850.1| full-length cDNA clone CS0DH003YE11 of T cells (... 40 9.6
33gb|AC018618.5|AC018618 Homo sapiens chromosome 15, clone RP11-16... 40 9.6
34gb|AC006461.2| Homo sapiens BAC clone RP11-343N14 from 2, comple... 40 9.6
35ref|XM_236578.3| PREDICTED: Rattus norvegicus similar to mKIAA02... 40 9.6
36dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.6
37emb|AL929084.11| Mouse DNA sequence from clone RP23-66M24 on chr... 40 9.6
38dbj|AK122014.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.6
39dbj|AK065412.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.6
40dbj|AP000744.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 9.6
41emb|CT573501.1| Medicago truncatula chromosome 5 clone mth2-60o2... 40 9.6
42gb|AC158142.19| Mus musculus chromosome 15, clone RP24-342H15, c... 40 9.6
43gb|L16016.1|HUMRPS3X Human ribosomal protein S3 (RPS3) gene exon... 40 9.6
44dbj|AB061838.1| Homo sapiens RPS3, U15a, U15b genes for ribosoma... 40 9.6 
>ref|XM_477219.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1864

 Score =  216 bits (109), Expect = 7e-53
 Identities = 163/181 (90%)
 Strand = Plus / Minus

                                                                        
Query: 521  cacctcattgacaaccactcattctggcccaatccacaaactgcattcctccatagacgt 580
            ||||||||||||||||  ||||||| ||||| ||||||||||||||||||||||| | ||
Sbjct: 1534 cacctcattgacaaccggtcattctagcccagtccacaaactgcattcctccataaatgt 1475

                                                                        
Query: 581  tatttgcaaagcgcacgctgacagtgaatgccaaagaagcagccgggacacgcttgccaa 640
            |||||||||||||||| | |||||||||||||| |||| |||| |||||||||||| |||
Sbjct: 1474 tatttgcaaagcgcacaccgacagtgaatgccagagaaacagctgggacacgcttggcaa 1415

                                                                        
Query: 641  gaggcgaagcctcaaccaagcgctcaagcccattaattacctgataacgggtgttggaag 700
             ||| |||||||||||||  ||||||||||||||||| | ||||||||||||||||||||
Sbjct: 1414 caggtgaagcctcaaccacacgctcaagcccattaataatctgataacgggtgttggaag 1355

             
Query: 701  a 701
            |
Sbjct: 1354 a 1354
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>ref|XM_506238.1| PREDICTED Oryza sativa (japonica cultivar-group), P0523A04.107 mRNA
          Length = 1880

 Score =  216 bits (109), Expect = 7e-53
 Identities = 163/181 (90%)
 Strand = Plus / Minus

                                                                        
Query: 521  cacctcattgacaaccactcattctggcccaatccacaaactgcattcctccatagacgt 580
            ||||||||||||||||  ||||||| ||||| ||||||||||||||||||||||| | ||
Sbjct: 1549 cacctcattgacaaccggtcattctagcccagtccacaaactgcattcctccataaatgt 1490

                                                                        
Query: 581  tatttgcaaagcgcacgctgacagtgaatgccaaagaagcagccgggacacgcttgccaa 640
            |||||||||||||||| | |||||||||||||| |||| |||| |||||||||||| |||
Sbjct: 1489 tatttgcaaagcgcacaccgacagtgaatgccagagaaacagctgggacacgcttggcaa 1430

                                                                        
Query: 641  gaggcgaagcctcaaccaagcgctcaagcccattaattacctgataacgggtgttggaag 700
             ||| |||||||||||||  ||||||||||||||||| | ||||||||||||||||||||
Sbjct: 1429 caggtgaagcctcaaccacacgctcaagcccattaataatctgataacgggtgttggaag 1370

             
Query: 701  a 701
            |
Sbjct: 1369 a 1369
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  216 bits (109), Expect = 7e-53
 Identities = 163/181 (90%)
 Strand = Plus / Minus

                                                                           
Query: 521     cacctcattgacaaccactcattctggcccaatccacaaactgcattcctccatagacgt 580
               ||||||||||||||||  ||||||| ||||| ||||||||||||||||||||||| | ||
Sbjct: 7826673 cacctcattgacaaccggtcattctagcccagtccacaaactgcattcctccataaatgt 7826614

                                                                           
Query: 581     tatttgcaaagcgcacgctgacagtgaatgccaaagaagcagccgggacacgcttgccaa 640
               |||||||||||||||| | |||||||||||||| |||| |||| |||||||||||| |||
Sbjct: 7826613 tatttgcaaagcgcacaccgacagtgaatgccagagaaacagctgggacacgcttggcaa 7826554

                                                                           
Query: 641     gaggcgaagcctcaaccaagcgctcaagcccattaattacctgataacgggtgttggaag 700
                ||| |||||||||||||  ||||||||||||||||| | ||||||||||||||||||||
Sbjct: 7826553 caggtgaagcctcaaccacacgctcaagcccattaataatctgataacgggtgttggaag 7826494

                
Query: 701     a 701
               |
Sbjct: 7826493 a 7826493



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 601      acagtgaatgccaaagaagc 620
                ||||||||||||||||||||
Sbjct: 28343011 acagtgaatgccaaagaagc 28342992
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>dbj|AP004340.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0523A04
          Length = 149049

 Score =  216 bits (109), Expect = 7e-53
 Identities = 163/181 (90%)
 Strand = Plus / Minus

                                                                         
Query: 521   cacctcattgacaaccactcattctggcccaatccacaaactgcattcctccatagacgt 580
             ||||||||||||||||  ||||||| ||||| ||||||||||||||||||||||| | ||
Sbjct: 75671 cacctcattgacaaccggtcattctagcccagtccacaaactgcattcctccataaatgt 75612

                                                                         
Query: 581   tatttgcaaagcgcacgctgacagtgaatgccaaagaagcagccgggacacgcttgccaa 640
             |||||||||||||||| | |||||||||||||| |||| |||| |||||||||||| |||
Sbjct: 75611 tatttgcaaagcgcacaccgacagtgaatgccagagaaacagctgggacacgcttggcaa 75552

                                                                         
Query: 641   gaggcgaagcctcaaccaagcgctcaagcccattaattacctgataacgggtgttggaag 700
              ||| |||||||||||||  ||||||||||||||||| | ||||||||||||||||||||
Sbjct: 75551 caggtgaagcctcaaccacacgctcaagcccattaataatctgataacgggtgttggaag 75492

              
Query: 701   a 701
             |
Sbjct: 75491 a 75491
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>dbj|AK098977.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093D20, full
            insert sequence
          Length = 1864

 Score =  216 bits (109), Expect = 7e-53
 Identities = 163/181 (90%)
 Strand = Plus / Minus

                                                                        
Query: 521  cacctcattgacaaccactcattctggcccaatccacaaactgcattcctccatagacgt 580
            ||||||||||||||||  ||||||| ||||| ||||||||||||||||||||||| | ||
Sbjct: 1534 cacctcattgacaaccggtcattctagcccagtccacaaactgcattcctccataaatgt 1475

                                                                        
Query: 581  tatttgcaaagcgcacgctgacagtgaatgccaaagaagcagccgggacacgcttgccaa 640
            |||||||||||||||| | |||||||||||||| |||| |||| |||||||||||| |||
Sbjct: 1474 tatttgcaaagcgcacaccgacagtgaatgccagagaaacagctgggacacgcttggcaa 1415

                                                                        
Query: 641  gaggcgaagcctcaaccaagcgctcaagcccattaattacctgataacgggtgttggaag 700
             ||| |||||||||||||  ||||||||||||||||| | ||||||||||||||||||||
Sbjct: 1414 caggtgaagcctcaaccacacgctcaagcccattaataatctgataacgggtgttggaag 1355

             
Query: 701  a 701
            |
Sbjct: 1354 a 1354
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>dbj|AK072205.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013168D12, full
            insert sequence
          Length = 1880

 Score =  216 bits (109), Expect = 7e-53
 Identities = 163/181 (90%)
 Strand = Plus / Minus

                                                                        
Query: 521  cacctcattgacaaccactcattctggcccaatccacaaactgcattcctccatagacgt 580
            ||||||||||||||||  ||||||| ||||| ||||||||||||||||||||||| | ||
Sbjct: 1549 cacctcattgacaaccggtcattctagcccagtccacaaactgcattcctccataaatgt 1490

                                                                        
Query: 581  tatttgcaaagcgcacgctgacagtgaatgccaaagaagcagccgggacacgcttgccaa 640
            |||||||||||||||| | |||||||||||||| |||| |||| |||||||||||| |||
Sbjct: 1489 tatttgcaaagcgcacaccgacagtgaatgccagagaaacagctgggacacgcttggcaa 1430

                                                                        
Query: 641  gaggcgaagcctcaaccaagcgctcaagcccattaattacctgataacgggtgttggaag 700
             ||| |||||||||||||  ||||||||||||||||| | ||||||||||||||||||||
Sbjct: 1429 caggtgaagcctcaaccacacgctcaagcccattaataatctgataacgggtgttggaag 1370

             
Query: 701  a 701
            |
Sbjct: 1369 a 1369
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>gb|AY110370.1| Zea mays CL6577_1 mRNA sequence
          Length = 879

 Score =  147 bits (74), Expect = 6e-32
 Identities = 152/178 (85%)
 Strand = Plus / Plus

                                                                       
Query: 524 ctcattgacaaccactcattctggcccaatccacaaactgcattcctccatagacgttat 583
           ||||||| || ||||||||||| ||||| || ||||||||||| ||||| || |||||||
Sbjct: 393 ctcattggcagccactcattcttgcccagtcaacaaactgcatccctccgtacacgttat 452

                                                                       
Query: 584 ttgcaaagcgcacgctgacagtgaatgccaaagaagcagccgggacacgcttgccaagag 643
           | ||||| | ||| |  ||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 453 tggcaaacctcacaccaacagtgaatgccaaagaagcagccgggacacgcttcccaacag 512

                                                                     
Query: 644 gcgaagcctcaaccaagcgctcaagcccattaattacctgataacgggtgttggaaga 701
           | ||||||||||||| |||||| |  |||||||| | ||| || || |||||||||||
Sbjct: 513 gtgaagcctcaaccaggcgctctaatccattaataatctggtaccgtgtgttggaaga 570
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>gb|BT024117.1| Zea mays clone EL01N0509C07 mRNA sequence
          Length = 1526

 Score =  107 bits (54), Expect = 5e-20
 Identities = 147/178 (82%)
 Strand = Plus / Minus

                                                                        
Query: 524  ctcattgacaaccactcattctggcccaatccacaaactgcattcctccatagacgttat 583
            ||||||| || ||||||||||| |||||  | ||||||||||| ||||| || |||||||
Sbjct: 1340 ctcattggcagccactcattcttgcccaggcaacaaactgcatccctccgtacacgttat 1281

                                                                        
Query: 584  ttgcaaagcgcacgctgacagtgaatgccaaagaagcagccgggacacgcttgccaagag 643
            | ||||| | ||| |  || |||||||||||| ||||||||||||||| |||  ||| ||
Sbjct: 1280 tggcaaacctcacaccaacggtgaatgccaaaaaagcagccgggacacccttcgcaacag 1221

                                                                      
Query: 644  gcgaagcctcaaccaagcgctcaagcccattaattacctgataacgggtgttggaaga 701
            | ||||||||||||| |||||| |  |||||||| | ||| || || |||||||||||
Sbjct: 1220 gtgaagcctcaaccaggcgctctaatccattaataatctggtaccgtgtgttggaaga 1163
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>ref|NM_001036429.1| Arabidopsis thaliana LCD1 (LOWER CELL DENSITY 1) AT2G37860 (LCD1)
            transcript variant AT2G37860.3 mRNA, complete cds
          Length = 1531

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                    
Query: 529  tgacaaccactcattctggcccaatccacaaactgcattcctccatagacgttatt 584
            |||||||| |||| ||| ||||||||||||||||||||||| || |||| ||||||
Sbjct: 1400 tgacaaccgctcaatcttgcccaatccacaaactgcattccgccgtagatgttatt 1345
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>ref|NM_179956.1| Arabidopsis thaliana LCD1 (LOWER CELL DENSITY 1) AT2G37860 (LCD1)
            transcript variant AT2G37860.1 mRNA, complete cds
          Length = 1625

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                    
Query: 529  tgacaaccactcattctggcccaatccacaaactgcattcctccatagacgttatt 584
            |||||||| |||| ||| ||||||||||||||||||||||| || |||| ||||||
Sbjct: 1494 tgacaaccgctcaatcttgcccaatccacaaactgcattccgccgtagatgttatt 1439
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>ref|NM_179957.3| Arabidopsis thaliana LCD1 (LOWER CELL DENSITY 1) AT2G37860 (LCD1)
            transcript variant AT2G37860.2 mRNA, complete cds
          Length = 1842

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                    
Query: 529  tgacaaccactcattctggcccaatccacaaactgcattcctccatagacgttatt 584
            |||||||| |||| ||| ||||||||||||||||||||||| || |||| ||||||
Sbjct: 1711 tgacaaccgctcaatcttgcccaatccacaaactgcattccgccgtagatgttatt 1656
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>gb|AY081345.1| Arabidopsis thaliana unknown protein (At2g37860) mRNA, complete cds
          Length = 1621

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                    
Query: 529  tgacaaccactcattctggcccaatccacaaactgcattcctccatagacgttatt 584
            |||||||| |||| ||| ||||||||||||||||||||||| || |||| ||||||
Sbjct: 1494 tgacaaccgctcaatcttgcccaatccacaaactgcattccgccgtagatgttatt 1439
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>gb|AC007661.2|AC007661 Arabidopsis thaliana chromosome II section 205 of 255 of the complete
             sequence. Sequence from clones F13M22, T8P21, F16M14
          Length = 95612

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                     
Query: 529   tgacaaccactcattctggcccaatccacaaactgcattcctccatagacgttatt 584
             |||||||| |||| ||| ||||||||||||||||||||||| || |||| ||||||
Sbjct: 21927 tgacaaccgctcaatcttgcccaatccacaaactgcattccgccgtagatgttatt 21872
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>emb|CR388185.10| Zebrafish DNA sequence from clone CH211-256G21 in linkage group 18,
             complete sequence
          Length = 178361

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 144   taacataatctaacatatcaag 165
             ||||||||||||||||||||||
Sbjct: 28297 taacataatctaacatatcaag 28318
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>gb|AC093339.17| Mus musculus chromosome 19, clone RP23-5G6, complete sequence
          Length = 218747

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 405    agcaaggttccttcccatcac 425
              |||||||||||||||||||||
Sbjct: 166020 agcaaggttccttcccatcac 166000
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>gb|AC165273.2| Mus musculus BAC clone RP24-267I1 from chromosome 13, complete sequence
          Length = 190600

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 288    atcaaacagcagatcacatac 308
              |||||||||||||||||||||
Sbjct: 129552 atcaaacagcagatcacatac 129572
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>gb|AC102440.12| Mus musculus chromosome 1, clone RP24-146C18, complete sequence
          Length = 144770

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 288    atcaaacagcagatcacatac 308
              |||||||||||||||||||||
Sbjct: 124535 atcaaacagcagatcacatac 124515
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>gb|AC123073.4| Mus musculus BAC clone RP23-111E4 from 6, complete sequence
          Length = 191693

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 288    atcaaacagcagatcacatac 308
              |||||||||||||||||||||
Sbjct: 157312 atcaaacagcagatcacatac 157292
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>gb|AC119228.10| Mus musculus chromosome 19, clone RP24-209J17, complete sequence
          Length = 168362

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 405    agcaaggttccttcccatcac 425
              |||||||||||||||||||||
Sbjct: 144623 agcaaggttccttcccatcac 144643
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>emb|AL133286.9| Human DNA sequence from clone RP4-580N22 on chromosome 1q42.2-44
             Contains the 3' end of the CHS1 gene for Chediak-Higashi
             syndrome 1 protein and a CpG island, complete sequence
          Length = 93354

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 53    tacaaatcactaagcacttgg 73
             |||||||||||||||||||||
Sbjct: 25630 tacaaatcactaagcacttgg 25650
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>gb|AC163035.2| Mus musculus BAC clone RP23-301L2 from chromosome 6, complete sequence
          Length = 196798

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 288   atcaaacagcagatcacatac 308
             |||||||||||||||||||||
Sbjct: 94916 atcaaacagcagatcacatac 94896
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>gb|AC013402.9| Homo sapiens BAC clone RP11-134N15 from 2, complete sequence
          Length = 177882

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                               
Query: 474    tgtgaacaaataaaactgaactcaccatgaaaa 506
              ||||||||||||||||| ||| || ||||||||
Sbjct: 105721 tgtgaacaaataaaacttaacccagcatgaaaa 105753
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>emb|CT030176.18| Mouse DNA sequence from clone RP23-142L17 on chromosome 13, complete
             sequence
          Length = 218075

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 288   atcaaacagcagatcacatac 308
             |||||||||||||||||||||
Sbjct: 51727 atcaaacagcagatcacatac 51747
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>gb|AC147235.3| Mus musculus BAC clone RP23-353B7 from 6, complete sequence
          Length = 193668

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 288    atcaaacagcagatcacatac 308
              |||||||||||||||||||||
Sbjct: 191498 atcaaacagcagatcacatac 191518
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>emb|AL844590.3| Mouse DNA sequence from clone RP23-335P15 on chromosome 2, complete
              sequence
          Length = 231459

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 101    aagcctcttcctgattcattt 121
              |||||||||||||||||||||
Sbjct: 177349 aagcctcttcctgattcattt 177329
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>gb|AY791291.1| Homo sapiens ribosomal protein S3 (RPS3) gene, complete cds
          Length = 9306

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 82   gaatttcaacagttatacca 101
            ||||||||||||||||||||
Sbjct: 4068 gaatttcaacagttatacca 4049
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>gb|AC112938.11| Mus musculus chromosome 5, clone RP24-72E12, complete sequence
          Length = 235924

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 498    ccatgaaaaacatggatgca 517
              ||||||||||||||||||||
Sbjct: 161616 ccatgaaaaacatggatgca 161597
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>gb|AC164553.2| Mus musculus BAC clone RP23-361L12 from chromosome 14, complete sequence
          Length = 217754

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 281    tttctatatcaaacagcaga 300
              ||||||||||||||||||||
Sbjct: 182153 tttctatatcaaacagcaga 182172
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>gb|AC124580.5| Mus musculus BAC clone RP23-114G7 from chromosome 12, complete sequence
          Length = 176245

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 404   aagcaaggttccttcccatc 423
             ||||||||||||||||||||
Sbjct: 31759 aagcaaggttccttcccatc 31778
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>emb|BX248358.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment
             5/8
          Length = 348408

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 224   gttgccaatatcggcatcaa 243
             ||||||||||||||||||||
Sbjct: 91014 gttgccaatatcggcatcaa 91033
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>gb|AC122713.2| Homo sapiens chromosome 5 clone RP11-39H3, complete sequence
          Length = 149006

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     acatggttgaatttcaacag 93
              ||||||||||||||||||||
Sbjct: 123589 acatggttgaatttcaacag 123608
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>emb|CR610850.1| full-length cDNA clone CS0DH003YE11 of T cells (Jurkat cell line)
           of Homo sapiens (human)
          Length = 1356

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 82  gaatttcaacagttatacca 101
           ||||||||||||||||||||
Sbjct: 393 gaatttcaacagttatacca 374
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>gb|AC018618.5|AC018618 Homo sapiens chromosome 15, clone RP11-162I7, complete sequence
          Length = 156542

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 499    catgaaaaacatggatgcaatgca 522
              |||||||||| |||||||||||||
Sbjct: 138666 catgaaaaacttggatgcaatgca 138689
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>gb|AC006461.2| Homo sapiens BAC clone RP11-343N14 from 2, complete sequence
          Length = 181215

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 28     tttaaactcttctgattgct 47
              ||||||||||||||||||||
Sbjct: 165761 tttaaactcttctgattgct 165742
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>ref|XM_236578.3| PREDICTED: Rattus norvegicus similar to mKIAA0259 protein
           (LOC315969), mRNA
          Length = 4959

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 207 aattctgcagccaagctgtt 226
           ||||||||||||||||||||
Sbjct: 459 aattctgcagccaagctgtt 440
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>dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0470D12
          Length = 157248

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 601   acagtgaatgccaaagaagc 620
             ||||||||||||||||||||
Sbjct: 68574 acagtgaatgccaaagaagc 68555
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>emb|AL929084.11| Mouse DNA sequence from clone RP23-66M24 on chromosome 2, complete
              sequence
          Length = 183632

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 291    aaacagcagatcacatacaa 310
              ||||||||||||||||||||
Sbjct: 101819 aaacagcagatcacatacaa 101800
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>dbj|AK122014.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111J15, full
            insert sequence
          Length = 1949

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 601  acagtgaatgccaaagaagc 620
            ||||||||||||||||||||
Sbjct: 1282 acagtgaatgccaaagaagc 1301
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>dbj|AK065412.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013021C10, full
            insert sequence
          Length = 3685

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 601  acagtgaatgccaaagaagc 620
            ||||||||||||||||||||
Sbjct: 3018 acagtgaatgccaaagaagc 3037
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>dbj|AP000744.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-691P24, complete
             sequence
          Length = 126000

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    gaatttcaacagttatacca 101
             ||||||||||||||||||||
Sbjct: 92464 gaatttcaacagttatacca 92445
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>emb|CT573501.1| Medicago truncatula chromosome 5 clone mth2-60o20, COMPLETE SEQUENCE
          Length = 114271

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 499   catgaaaaacatggatgcaa 518
             ||||||||||||||||||||
Sbjct: 44049 catgaaaaacatggatgcaa 44068
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>gb|AC158142.19| Mus musculus chromosome 15, clone RP24-342H15, complete sequence
          Length = 195319

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 191    tcatgtttatttttggaatt 210
              ||||||||||||||||||||
Sbjct: 184631 tcatgtttatttttggaatt 184612
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>gb|L16016.1|HUMRPS3X Human ribosomal protein S3 (RPS3) gene exons 1-4, partial cds
          Length = 2852

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 82   gaatttcaacagttatacca 101
            ||||||||||||||||||||
Sbjct: 2329 gaatttcaacagttatacca 2310
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>dbj|AB061838.1| Homo sapiens RPS3, U15a, U15b genes for ribosomal protein S3, U15a
            and U15b snoRNA, complete cds and sequence
          Length = 9166

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 82   gaatttcaacagttatacca 101
            ||||||||||||||||||||
Sbjct: 3633 gaatttcaacagttatacca 3614


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,499,297
Number of Sequences: 3902068
Number of extensions: 6499297
Number of successful extensions: 123363
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 123206
Number of HSP's gapped (non-prelim): 157
length of query: 703
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 680
effective length of database: 17,143,297,704
effective search space: 11657442438720
effective search space used: 11657442438720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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