ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags16e11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_483456.1| Oryza sativa (japonica cultivar-group), mRNA 335 1e-88
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 335 1e-88
3dbj|AP004015.3| Oryza sativa (japonica cultivar-group) genomic D... 335 1e-88
4dbj|AK122011.1| Oryza sativa (japonica cultivar-group) cDNA clon... 335 1e-88
5ref|NM_189949.1| Oryza sativa (japonica cultivar-group), predic... 58 4e-05
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 58 4e-05
7dbj|AP003451.4| Oryza sativa (japonica cultivar-group) genomic D... 58 4e-05
8gb|BC081080.1| Xenopus laevis MGC82122 protein, mRNA (cDNA clone... 44 0.56
9gb|AC122511.5| Mus musculus BAC clone RP24-446A8 from chromosome... 44 0.56
10gb|AC002044.1|HUAC002044 Human Chromosome 16 BAC clone CIT987SK-... 42 2.2
11gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete seq... 42 2.2
12emb|AL358790.22| Human DNA sequence from clone RP11-753C18 on ch... 42 2.2
13dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, compl... 42 2.2
14gb|AC009144.5|AC009144 Homo sapiens chromosome 16 clone RP11-551... 42 2.2
15gb|AC132068.2| Homo sapiens chromosome 16 clone CTD-2326C4, comp... 42 2.2
16gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome 40 8.7
17ref|XM_517389.1| PREDICTED: Pan troglodytes similar to collagen,... 40 8.7
18gb|AY331533.1| Human echovirus 13 strain USA-NY01-10277 capsid p... 40 8.7
19gb|AY331510.1| Human echovirus 13 strain USA-CA01-10295 capsid p... 40 8.7
20gb|AY331509.1| Human echovirus 13 strain USA-MT01-10294 capsid p... 40 8.7
21gb|AC158351.4| Mus musculus chromosome 8, clone RP24-274N3, comp... 40 8.7
22gb|AC095787.7| Rattus norvegicus 14 BAC CH230-9M3 (Children's Ho... 40 8.7
23gb|BC030649.1| Homo sapiens collagen, type XXV, alpha 1, mRNA (c... 40 8.7
24ref|NM_198721.1| Homo sapiens collagen, type XXV, alpha 1 (COL25... 40 8.7
25ref|NM_032518.2| Homo sapiens collagen, type XXV, alpha 1 (COL25... 40 8.7
26gb|AC117475.2| Homo sapiens 3 BAC RP11-742C10 (Roswell Park Canc... 40 8.7
27gb|AF293341.1| Homo sapiens collagen-like Alzheimer amyloid plaq... 40 8.7
28gb|AF293340.1| Homo sapiens collagen-like Alzheimer amyloid plaq... 40 8.7
29gb|AC116747.10| Mus musculus chromosome 8, clone RP23-80O20, com... 40 8.7
30emb|BX248100.9| Zebrafish DNA sequence from clone CH211-222O11 i... 40 8.7
31emb|BX649429.13| Zebrafish DNA sequence from clone DKEY-1H4 in l... 40 8.7
32gb|AC004051.1|AC004051 Homo sapiens chromosome 4 clone B208G5 ma... 40 8.7 
>ref|XM_483456.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1617

 Score =  335 bits (169), Expect = 1e-88
 Identities = 366/431 (84%), Gaps = 3/431 (0%)
 Strand = Plus / Minus

                                                                        
Query: 192  atccacttggaggtgacttgagcactttgacgaggtttcatgggaatctgagacaggttc 251
            |||||||||||||| |||||||||||||| ||||||||||||||||| || || |  |||
Sbjct: 1610 atccacttggaggtaacttgagcactttgccgaggtttcatgggaatttgtgataaattc 1551

                                                                        
Query: 252  ctctttttcatgttggaggagaccgtagggctgaaataaacctggcttttctgtgaaatt 311
            |||||||||||| | |||||||| ||||| |||||| || | ||||||||||| ||||| 
Sbjct: 1550 ctctttttcatgcttgaggagacagtaggactgaaaaaatcttggcttttctgcgaaatg 1491

                                                                        
Query: 312  gatgctgcttgcaagtgtggttttctcaaagggatgaatgcatgcgaccttgagggtggc 371
            | ||| || ||||| ||||||||||||||||| ||||| |  || ||| ||||||| | |
Sbjct: 1490 gctgcagcctgcaaatgtggttttctcaaaggaatgaaggtgtgtgactttgagggggcc 1431

                                                                        
Query: 372  cctttcgaagattcaacacttttaggcgaatcccatttgctatggtttgcaaaactctgt 431
            ||||||||||||||||||||||| || |||||||| |||||||| ||  |||||||||||
Sbjct: 1430 cctttcgaagattcaacactttttggggaatcccacttgctatgattcacaaaactctgt 1371

                                                                        
Query: 432  gaccggccaactatctggggcctcttgtcctttggactcggaatgtttctgctttccata 491
            || |  ||||| |||| |||  |||| |||||||| || || ||||||||||||||| ||
Sbjct: 1370 gatctcccaaccatcttgggattcttttcctttgggctagggatgtttctgctttcccta 1311

                                                                        
Query: 492  gtttccgcagagtacattgtctcctccccgctgctaaaaccgtccctcttgtccc---gt 548
            ||||| |||||||||||||||||||| || |||||||||||| ||||||  ||||     
Sbjct: 1310 gtttcagcagagtacattgtctcctctccactgctaaaaccgcccctctcatcccccaac 1251

                                                                        
Query: 549  tctgatattgctggtggtgaagaacttgactgcgcctcattccagcagttttcctggtaa 608
            ||||||||  ||||||| || ||||| ||||| |||||| ||||||| ||||||||||||
Sbjct: 1250 tctgatatatctggtggagaggaactggactgagcctcactccagcaattttcctggtaa 1191

                       
Query: 609  gcaacattgtg 619
            |||||||||||
Sbjct: 1190 gcaacattgtg 1180
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  335 bits (169), Expect = 1e-88
 Identities = 366/431 (84%), Gaps = 3/431 (0%)
 Strand = Plus / Plus

                                                                            
Query: 192      atccacttggaggtgacttgagcactttgacgaggtttcatgggaatctgagacaggttc 251
                |||||||||||||| |||||||||||||| ||||||||||||||||| || || |  |||
Sbjct: 26312282 atccacttggaggtaacttgagcactttgccgaggtttcatgggaatttgtgataaattc 26312341

                                                                            
Query: 252      ctctttttcatgttggaggagaccgtagggctgaaataaacctggcttttctgtgaaatt 311
                |||||||||||| | |||||||| ||||| |||||| || | ||||||||||| ||||| 
Sbjct: 26312342 ctctttttcatgcttgaggagacagtaggactgaaaaaatcttggcttttctgcgaaatg 26312401

                                                                            
Query: 312      gatgctgcttgcaagtgtggttttctcaaagggatgaatgcatgcgaccttgagggtggc 371
                | ||| || ||||| ||||||||||||||||| ||||| |  || ||| ||||||| | |
Sbjct: 26312402 gctgcagcctgcaaatgtggttttctcaaaggaatgaaggtgtgtgactttgagggggcc 26312461

                                                                            
Query: 372      cctttcgaagattcaacacttttaggcgaatcccatttgctatggtttgcaaaactctgt 431
                ||||||||||||||||||||||| || |||||||| |||||||| ||  |||||||||||
Sbjct: 26312462 cctttcgaagattcaacactttttggggaatcccacttgctatgattcacaaaactctgt 26312521

                                                                            
Query: 432      gaccggccaactatctggggcctcttgtcctttggactcggaatgtttctgctttccata 491
                || |  ||||| |||| |||  |||| |||||||| || || ||||||||||||||| ||
Sbjct: 26312522 gatctcccaaccatcttgggattcttttcctttgggctagggatgtttctgctttcccta 26312581

                                                                            
Query: 492      gtttccgcagagtacattgtctcctccccgctgctaaaaccgtccctcttgtccc---gt 548
                ||||| |||||||||||||||||||| || |||||||||||| ||||||  ||||     
Sbjct: 26312582 gtttcagcagagtacattgtctcctctccactgctaaaaccgcccctctcatcccccaac 26312641

                                                                            
Query: 549      tctgatattgctggtggtgaagaacttgactgcgcctcattccagcagttttcctggtaa 608
                ||||||||  ||||||| || ||||| ||||| |||||| ||||||| ||||||||||||
Sbjct: 26312642 tctgatatatctggtggagaggaactggactgagcctcactccagcaattttcctggtaa 26312701

                           
Query: 609      gcaacattgtg 619
                |||||||||||
Sbjct: 26312702 gcaacattgtg 26312712
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>dbj|AP004015.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1770_H02
          Length = 170648

 Score =  335 bits (169), Expect = 1e-88
 Identities = 366/431 (84%), Gaps = 3/431 (0%)
 Strand = Plus / Plus

                                                                         
Query: 192   atccacttggaggtgacttgagcactttgacgaggtttcatgggaatctgagacaggttc 251
             |||||||||||||| |||||||||||||| ||||||||||||||||| || || |  |||
Sbjct: 41863 atccacttggaggtaacttgagcactttgccgaggtttcatgggaatttgtgataaattc 41922

                                                                         
Query: 252   ctctttttcatgttggaggagaccgtagggctgaaataaacctggcttttctgtgaaatt 311
             |||||||||||| | |||||||| ||||| |||||| || | ||||||||||| ||||| 
Sbjct: 41923 ctctttttcatgcttgaggagacagtaggactgaaaaaatcttggcttttctgcgaaatg 41982

                                                                         
Query: 312   gatgctgcttgcaagtgtggttttctcaaagggatgaatgcatgcgaccttgagggtggc 371
             | ||| || ||||| ||||||||||||||||| ||||| |  || ||| ||||||| | |
Sbjct: 41983 gctgcagcctgcaaatgtggttttctcaaaggaatgaaggtgtgtgactttgagggggcc 42042

                                                                         
Query: 372   cctttcgaagattcaacacttttaggcgaatcccatttgctatggtttgcaaaactctgt 431
             ||||||||||||||||||||||| || |||||||| |||||||| ||  |||||||||||
Sbjct: 42043 cctttcgaagattcaacactttttggggaatcccacttgctatgattcacaaaactctgt 42102

                                                                         
Query: 432   gaccggccaactatctggggcctcttgtcctttggactcggaatgtttctgctttccata 491
             || |  ||||| |||| |||  |||| |||||||| || || ||||||||||||||| ||
Sbjct: 42103 gatctcccaaccatcttgggattcttttcctttgggctagggatgtttctgctttcccta 42162

                                                                         
Query: 492   gtttccgcagagtacattgtctcctccccgctgctaaaaccgtccctcttgtccc---gt 548
             ||||| |||||||||||||||||||| || |||||||||||| ||||||  ||||     
Sbjct: 42163 gtttcagcagagtacattgtctcctctccactgctaaaaccgcccctctcatcccccaac 42222

                                                                         
Query: 549   tctgatattgctggtggtgaagaacttgactgcgcctcattccagcagttttcctggtaa 608
             ||||||||  ||||||| || ||||| ||||| |||||| ||||||| ||||||||||||
Sbjct: 42223 tctgatatatctggtggagaggaactggactgagcctcactccagcaattttcctggtaa 42282

                        
Query: 609   gcaacattgtg 619
             |||||||||||
Sbjct: 42283 gcaacattgtg 42293
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>dbj|AK122011.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111I11, full
            insert sequence
          Length = 2036

 Score =  335 bits (169), Expect = 1e-88
 Identities = 366/431 (84%), Gaps = 3/431 (0%)
 Strand = Plus / Minus

                                                                        
Query: 192  atccacttggaggtgacttgagcactttgacgaggtttcatgggaatctgagacaggttc 251
            |||||||||||||| |||||||||||||| ||||||||||||||||| || || |  |||
Sbjct: 1784 atccacttggaggtaacttgagcactttgccgaggtttcatgggaatttgtgataaattc 1725

                                                                        
Query: 252  ctctttttcatgttggaggagaccgtagggctgaaataaacctggcttttctgtgaaatt 311
            |||||||||||| | |||||||| ||||| |||||| || | ||||||||||| ||||| 
Sbjct: 1724 ctctttttcatgcttgaggagacagtaggactgaaaaaatcttggcttttctgcgaaatg 1665

                                                                        
Query: 312  gatgctgcttgcaagtgtggttttctcaaagggatgaatgcatgcgaccttgagggtggc 371
            | ||| || ||||| ||||||||||||||||| ||||| |  || ||| ||||||| | |
Sbjct: 1664 gctgcagcctgcaaatgtggttttctcaaaggaatgaaggtgtgtgactttgagggggcc 1605

                                                                        
Query: 372  cctttcgaagattcaacacttttaggcgaatcccatttgctatggtttgcaaaactctgt 431
            ||||||||||||||||||||||| || |||||||| |||||||| ||  |||||||||||
Sbjct: 1604 cctttcgaagattcaacactttttggggaatcccacttgctatgattcacaaaactctgt 1545

                                                                        
Query: 432  gaccggccaactatctggggcctcttgtcctttggactcggaatgtttctgctttccata 491
            || |  ||||| |||| |||  |||| |||||||| || || ||||||||||||||| ||
Sbjct: 1544 gatctcccaaccatcttgggattcttttcctttgggctagggatgtttctgctttcccta 1485

                                                                        
Query: 492  gtttccgcagagtacattgtctcctccccgctgctaaaaccgtccctcttgtccc---gt 548
            ||||| |||||||||||||||||||| || |||||||||||| ||||||  ||||     
Sbjct: 1484 gtttcagcagagtacattgtctcctctccactgctaaaaccgcccctctcatcccccaac 1425

                                                                        
Query: 549  tctgatattgctggtggtgaagaacttgactgcgcctcattccagcagttttcctggtaa 608
            ||||||||  ||||||| || ||||| ||||| |||||| ||||||| ||||||||||||
Sbjct: 1424 tctgatatatctggtggagaggaactggactgagcctcactccagcaattttcctggtaa 1365

                       
Query: 609  gcaacattgtg 619
            |||||||||||
Sbjct: 1364 gcaacattgtg 1354
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>ref|NM_189949.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1779

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                 
Query: 471  ggaatgtttctgctttccatagtttccgcagagtacattgtctcctccccgct 523
            |||||||| ||||| ||||| |||||||| ||||||||||| |||||| ||||
Sbjct: 1493 ggaatgttcctgctctccatggtttccgctgagtacattgtttcctcctcgct 1441
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                     
Query: 471      ggaatgtttctgctttccatagtttccgcagagtacattgtctcctccccgct 523
                |||||||| ||||| ||||| |||||||| ||||||||||| |||||| ||||
Sbjct: 39987685 ggaatgttcctgctctccatggtttccgctgagtacattgtttcctcctcgct 39987633
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>dbj|AP003451.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0413C03
          Length = 162161

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                  
Query: 471   ggaatgtttctgctttccatagtttccgcagagtacattgtctcctccccgct 523
             |||||||| ||||| ||||| |||||||| ||||||||||| |||||| ||||
Sbjct: 79136 ggaatgttcctgctctccatggtttccgctgagtacattgtttcctcctcgct 79084
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>gb|BC081080.1| Xenopus laevis MGC82122 protein, mRNA (cDNA clone MGC:82122
           IMAGE:7012027), complete cds
          Length = 2855

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 470 cggaatgtttctgctttccata 491
           ||||||||||||||||||||||
Sbjct: 635 cggaatgtttctgctttccata 656
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>gb|AC122511.5| Mus musculus BAC clone RP24-446A8 from chromosome 6, complete sequence
          Length = 157847

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 326   gtgtggttttctcaaagggatg 347
             ||||||||||||||||||||||
Sbjct: 93985 gtgtggttttctcaaagggatg 93964
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>gb|AC002044.1|HUAC002044 Human Chromosome 16 BAC clone CIT987SK-A-418G10, complete sequence
          Length = 218074

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 254    ctttttcatgttggaggagac 274
              |||||||||||||||||||||
Sbjct: 146938 ctttttcatgttggaggagac 146958
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>gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete sequence
          Length = 3281944

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 325     agtgtggttttctcaaaggga 345
               |||||||||||||||||||||
Sbjct: 1329191 agtgtggttttctcaaaggga 1329211
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>emb|AL358790.22| Human DNA sequence from clone RP11-753C18 on chromosome 10 Contains
             three novel genes, the CYP17A1 gene for cytochrome P450
             17A1, a profilin 1 (PFN1) pseudogene, the gene for
             methyltransferase cyt19, an unactive progesterone receptor
             23 kD (TEBP) pseudogene, a ribosomal protein L22 (RPL22)
             pseudogene and a CpG island, complete sequence
          Length = 131753

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 285   aaataaacctggcttttctgtgaaa 309
             ||||||| |||||||||||||||||
Sbjct: 24356 aaataaaactggcttttctgtgaaa 24332
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>dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, complete sequence
          Length = 3354505

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 325     agtgtggttttctcaaaggga 345
               |||||||||||||||||||||
Sbjct: 3103705 agtgtggttttctcaaaggga 3103685
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>gb|AC009144.5|AC009144 Homo sapiens chromosome 16 clone RP11-551E2, complete sequence
          Length = 173758

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 285  aaataaacctggcttttctgtgaaa 309
            ||||||| |||||||||||||||||
Sbjct: 8391 aaataaaactggcttttctgtgaaa 8367
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>gb|AC132068.2| Homo sapiens chromosome 16 clone CTD-2326C4, complete sequence
          Length = 142641

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 254   ctttttcatgttggaggagac 274
             |||||||||||||||||||||
Sbjct: 55062 ctttttcatgttggaggagac 55082
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>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 450     ggcctcttgtcctttggactcgga 473
               |||||| |||||||||||||||||
Sbjct: 1117463 ggcctcatgtcctttggactcgga 1117440
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>ref|XM_517389.1| PREDICTED: Pan troglodytes similar to collagen, type XXV, alpha 1
           isoform 2; collagen-like Alzheimer amyloid plaque
           component precursor (LOC461429), mRNA
          Length = 735

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 161 ggagagaagaaagcggggat 180
           ||||||||||||||||||||
Sbjct: 141 ggagagaagaaagcggggat 160
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>gb|AY331533.1| Human echovirus 13 strain USA-NY01-10277 capsid protein VP1 (VP1)
           gene, partial cds
          Length = 263

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 199 tggaggtgacttgagcactt 218
           ||||||||||||||||||||
Sbjct: 241 tggaggtgacttgagcactt 222
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>gb|AY331510.1| Human echovirus 13 strain USA-CA01-10295 capsid protein VP1 (VP1)
           gene, partial cds
          Length = 263

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 199 tggaggtgacttgagcactt 218
           ||||||||||||||||||||
Sbjct: 241 tggaggtgacttgagcactt 222
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>gb|AY331509.1| Human echovirus 13 strain USA-MT01-10294 capsid protein VP1 (VP1)
           gene, partial cds
          Length = 263

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 199 tggaggtgacttgagcactt 218
           ||||||||||||||||||||
Sbjct: 241 tggaggtgacttgagcactt 222
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>gb|AC158351.4| Mus musculus chromosome 8, clone RP24-274N3, complete sequence
          Length = 167820

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 562    gtggtgaagaacttgactgc 581
              ||||||||||||||||||||
Sbjct: 142561 gtggtgaagaacttgactgc 142542
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>gb|AC095787.7| Rattus norvegicus 14 BAC CH230-9M3 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 242500

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 287    ataaacctggcttttctgtgaaattgat 314
              |||||| |||||||||||||||| ||||
Sbjct: 106871 ataaacttggcttttctgtgaaactgat 106844
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>gb|BC030649.1| Homo sapiens collagen, type XXV, alpha 1, mRNA (cDNA clone
           IMAGE:5269396), containing frame-shift errors
          Length = 2513

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 161 ggagagaagaaagcggggat 180
           ||||||||||||||||||||
Sbjct: 146 ggagagaagaaagcggggat 165
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>ref|NM_198721.1| Homo sapiens collagen, type XXV, alpha 1 (COL25A1), transcript
           variant 1, mRNA
          Length = 2607

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 161 ggagagaagaaagcggggat 180
           ||||||||||||||||||||
Sbjct: 417 ggagagaagaaagcggggat 436
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>ref|NM_032518.2| Homo sapiens collagen, type XXV, alpha 1 (COL25A1), transcript
           variant 2, mRNA
          Length = 2681

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 161 ggagagaagaaagcggggat 180
           ||||||||||||||||||||
Sbjct: 417 ggagagaagaaagcggggat 436
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>gb|AC117475.2| Homo sapiens 3 BAC RP11-742C10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 117000

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   atctggagagaagaaagcgg 176
             ||||||||||||||||||||
Sbjct: 62283 atctggagagaagaaagcgg 62302
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>gb|AF293341.1| Homo sapiens collagen-like Alzheimer amyloid plaque component
           precursor type II mRNA, complete cds
          Length = 2665

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 161 ggagagaagaaagcggggat 180
           ||||||||||||||||||||
Sbjct: 417 ggagagaagaaagcggggat 436
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>gb|AF293340.1| Homo sapiens collagen-like Alzheimer amyloid plaque component
           precursor type I mRNA, complete cds
          Length = 2607

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 161 ggagagaagaaagcggggat 180
           ||||||||||||||||||||
Sbjct: 417 ggagagaagaaagcggggat 436
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>gb|AC116747.10| Mus musculus chromosome 8, clone RP23-80O20, complete sequence
          Length = 201313

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 562    gtggtgaagaacttgactgc 581
              ||||||||||||||||||||
Sbjct: 124805 gtggtgaagaacttgactgc 124824
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>emb|BX248100.9| Zebrafish DNA sequence from clone CH211-222O11 in linkage group 7,
             complete sequence
          Length = 223489

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 584   ctcattccagcagttttcct 603
             ||||||||||||||||||||
Sbjct: 73508 ctcattccagcagttttcct 73489
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>emb|BX649429.13| Zebrafish DNA sequence from clone DKEY-1H4 in linkage group 7, complete
              sequence
          Length = 268480

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 584    ctcattccagcagttttcct 603
              ||||||||||||||||||||
Sbjct: 155212 ctcattccagcagttttcct 155231
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>gb|AC004051.1|AC004051 Homo sapiens chromosome 4 clone B208G5 map 4q25, complete sequence
          Length = 147665

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 161    ggagagaagaaagcggggat 180
              ||||||||||||||||||||
Sbjct: 109583 ggagagaagaaagcggggat 109602


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,687,579
Number of Sequences: 3902068
Number of extensions: 5687579
Number of successful extensions: 93301
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93174
Number of HSP's gapped (non-prelim): 127
length of query: 640
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 617
effective length of database: 17,143,297,704
effective search space: 10577414683368
effective search space used: 10577414683368
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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