ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags16e08 |
|---|---|
| Clone Library Name | barley_pub |
>THNX_HORVU (Q8H0Q5) Probable leaf thionin precursor [Contains: Probable leaf| thionin; Acidic protein] Length = 137 Score = 43.5 bits (101), Expect(2) = 1e-05 Identities = 21/25 (84%), Positives = 21/25 (84%) Frame = -1 Query: 183 FDMEKXSNAXARFCNDGDVIQSVEA 109 FDM SNA ARFCNDGDVIQSVEA Sbjct: 113 FDMGLCSNACARFCNDGDVIQSVEA 137 Score = 23.1 bits (48), Expect(2) = 1e-05 Identities = 10/12 (83%), Positives = 10/12 (83%) Frame = -2 Query: 221 DNMXPVSRGQEM 186 DNM VSRGQEM Sbjct: 100 DNMDNVSRGQEM 111
>THN7_HORVU (Q42838) Thionin BTH7 precursor [Contains: Thionin BTH7; Acidic| protein] Length = 137 Score = 42.0 bits (97), Expect(2) = 3e-05 Identities = 20/25 (80%), Positives = 21/25 (84%) Frame = -1 Query: 183 FDMEKXSNAXARFCNDGDVIQSVEA 109 FDM SNA ARFCNDG+VIQSVEA Sbjct: 113 FDMGLCSNACARFCNDGEVIQSVEA 137 Score = 23.1 bits (48), Expect(2) = 3e-05 Identities = 10/12 (83%), Positives = 10/12 (83%) Frame = -2 Query: 221 DNMXPVSRGQEM 186 DNM VSRGQEM Sbjct: 100 DNMDNVSRGQEM 111
>THN5_HORVU (P09617) Leaf-specific thionin precursor [Contains: Leaf-specific| thionin; Acidic protein] Length = 137 Score = 42.0 bits (97), Expect(2) = 3e-05 Identities = 20/25 (80%), Positives = 21/25 (84%) Frame = -1 Query: 183 FDMEKXSNAXARFCNDGDVIQSVEA 109 FDM SNA ARFCNDG+VIQSVEA Sbjct: 113 FDMGLCSNACARFCNDGEVIQSVEA 137 Score = 23.1 bits (48), Expect(2) = 3e-05 Identities = 10/12 (83%), Positives = 10/12 (83%) Frame = -2 Query: 221 DNMXPVSRGQEM 186 DNM VSRGQEM Sbjct: 100 DNMDNVSRGQEM 111
>THN6_HORVU (P09618) Leaf-specific thionin BTH6 precursor [Contains:| Leaf-specific thionin BTH6; Acidic protein] Length = 137 Score = 40.4 bits (93), Expect(2) = 5e-04 Identities = 20/25 (80%), Positives = 20/25 (80%) Frame = -1 Query: 183 FDMEKXSNAXARFCNDGDVIQSVEA 109 FDM SNA ARFCNDG VIQSVEA Sbjct: 113 FDMGLCSNACARFCNDGAVIQSVEA 137 Score = 20.8 bits (42), Expect(2) = 5e-04 Identities = 9/12 (75%), Positives = 9/12 (75%) Frame = -2 Query: 221 DNMXPVSRGQEM 186 DNM V RGQEM Sbjct: 100 DNMDNVFRGQEM 111
>THN3_HORVU (P08772) Leaf-specific thionin DB4 precursor [Contains:| Leaf-specific thionin DB4; Acidic protein] Length = 137 Score = 40.4 bits (93), Expect(2) = 5e-04 Identities = 20/25 (80%), Positives = 20/25 (80%) Frame = -1 Query: 183 FDMEKXSNAXARFCNDGDVIQSVEA 109 FDM SNA ARFCNDG VIQSVEA Sbjct: 113 FDMGLCSNACARFCNDGAVIQSVEA 137 Score = 20.8 bits (42), Expect(2) = 5e-04 Identities = 9/12 (75%), Positives = 9/12 (75%) Frame = -2 Query: 221 DNMXPVSRGQEM 186 DNM V RGQEM Sbjct: 100 DNMDNVFRGQEM 111
>LTBP2_RAT (O35806) Latent transforming growth factor beta-binding protein 2| precursor (LTBP-2) Length = 1764 Score = 32.0 bits (71), Expect = 0.45 Identities = 15/45 (33%), Positives = 21/45 (46%) Frame = -1 Query: 144 CNDGDVIQSVEA*SCLLGHDFYGQGRFGIFCXXILKPSPDRSKCI 10 C D D + E CL GH +G F C +P+PD +C+ Sbjct: 1206 CQDVDECATTEP--CLGGHCVNTEGSFNCLCETGFQPAPDSGECV 1248
>LTBP2_HUMAN (Q14767) Latent transforming growth factor beta-binding protein 2| precursor (LTBP-2) Length = 1821 Score = 29.3 bits (64), Expect = 2.9 Identities = 13/45 (28%), Positives = 21/45 (46%) Frame = -1 Query: 144 CNDGDVIQSVEA*SCLLGHDFYGQGRFGIFCXXILKPSPDRSKCI 10 C D D + + C+ GH +G F C +PSP+ +C+ Sbjct: 1216 CQDVDECATTDP--CVGGHCVNTEGSFNCLCETGFQPSPESGECV 1258 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 28,092,086 Number of Sequences: 219361 Number of extensions: 399710 Number of successful extensions: 644 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 606 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 634 length of database: 80,573,946 effective HSP length: 49 effective length of database: 69,825,257 effective search space used: 1675806168 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
