ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags16e08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M19048.1|BLYTHNC Barley leaf specific thionin mRNA, complete ... 280 2e-72
2gb|M19047.1|BLYTHNB Barley leaf specific thionin mRNA, complete ... 280 2e-72
3emb|X05590.1|HVTHIOR5 Barley mRNA for leaf-specific thionin (clo... 272 4e-70
4emb|X05589.1|HVTHIOR4 Barley mRNA for leaf-specific thionin (clo... 264 1e-67
5gb|M19046.1|BLYTHNA Barley leaf specific thionin mRNA, complete ... 236 2e-59
6gb|L36883.1|BLYBTH7T Hordeum vulgare thionin (BTH7) gene, comple... 226 2e-56
7gb|L36882.1|BLYBTH6T Hordeum vulgare thionin (bth6) gene, comple... 167 2e-38
8emb|X05587.1|HVTHIOR2 Barley mRNA for leaf-specific thionin (clo... 165 7e-38
9emb|X05576.1|HVTHIOR1 Barley mRNA for leaf-specific thionin (clo... 159 4e-36
10emb|X05588.1|HVTHIOR3 Barley mRNA for leaf-specific thionin (clo... 153 3e-34
11emb|AJ508712.1|HVU508712 Hordeum vulgare mRNA for putative thionin 121 1e-24
12emb|BX248402.13| Zebrafish DNA sequence from clone CH211-226P14 ... 42 0.72
13emb|BX004990.12| Zebrafish DNA sequence from clone DKEY-12H12, c... 42 0.72
14dbj|AB072342.1| Avena sativa mRNA for thionin Asthi5, complete cds 42 0.72
15dbj|AB072341.1| Avena sativa mRNA for thionin Asthi4, complete cds 42 0.72
16gb|AC101677.8| Mus musculus chromosome 10, clone RP23-138N1, com... 40 2.8
17gb|AC150418.2| Branchiostoma floridae clone CH302-67G11, complet... 40 2.8
18gb|AC022395.4| Homo sapiens chromosome 10 clone RP11-354M20, com... 40 2.8
19gb|AC158631.6| Mus musculus 10 BAC RP23-424I1 (Roswell Park Canc... 40 2.8
20gb|AC133435.2| Homo sapiens 3 BAC RP11-343B5 (Roswell Park Cance... 40 2.8
21gb|AC155325.5| Mus musculus 10 BAC RP24-86C24 (Roswell Park Canc... 40 2.8
22gb|AC005879.3|AC005879 citb_287_c_20, complete sequence 40 2.8
23gb|AY487430.1| Uncultured organism clone 2A15 nitrilase (BD5338)... 40 2.8 
>gb|M19048.1|BLYTHNC Barley leaf specific thionin mRNA, complete cds, clone pKG1940
          Length = 663

 Score =  280 bits (141), Expect = 2e-72
 Identities = 190/207 (91%), Gaps = 1/207 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactaagatgatacatttgcttcgatctggtgatggtttcaagattgnggnacagaaaat 60
           ||||||||||||||||||||||||||||||||||||| |||||||||  | |||||||||
Sbjct: 562 aactaagatgatacatttgcttcgatctggtgatggtatcaagattgttgaacagaaaat 503

                                                                       
Query: 61  nccaaaacgaccttggccatagaaatcatgcccaagaaggcatgattaggcttcaacaga 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gacaaaacgaccttggccatagaaatcatgcccaagaaggcatgattaggcttcaacaga 443

                                                                       
Query: 121 ctgaatgacatcaccatcattacagaaacgggcncntgcgttgctgnttttttccatgtc 180
           ||||||||| ||||||||||||||||||||||| | ||||||||||     | |||||||
Sbjct: 442 ctgaatgacttcaccatcattacagaaacgggcacatgcgttgctgcagagtcccatgtc 383

                                      
Query: 181 gaa-tccatctcttggccacgggaaac 206
           ||| | |||||||||||||||||||||
Sbjct: 382 gaatttcatctcttggccacgggaaac 356
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>gb|M19047.1|BLYTHNB Barley leaf specific thionin mRNA, complete cds, clone pKG1348
          Length = 608

 Score =  280 bits (141), Expect = 2e-72
 Identities = 190/207 (91%), Gaps = 1/207 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactaagatgatacatttgcttcgatctggtgatggtttcaagattgnggnacagaaaat 60
           ||||||||||||||||||||||||||||||||||||| |||||||||  | |||||||||
Sbjct: 562 aactaagatgatacatttgcttcgatctggtgatggtatcaagattgttgaacagaaaat 503

                                                                       
Query: 61  nccaaaacgaccttggccatagaaatcatgcccaagaaggcatgattaggcttcaacaga 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gacaaaacgaccttggccatagaaatcatgcccaagaaggcatgattaggcttcaacaga 443

                                                                       
Query: 121 ctgaatgacatcaccatcattacagaaacgggcncntgcgttgctgnttttttccatgtc 180
           ||||||||| ||||||||||||||||||||||| | ||||||||||     | |||||||
Sbjct: 442 ctgaatgacttcaccatcattacagaaacgggcacatgcgttgctgcagagtcccatgtc 383

                                      
Query: 181 gaa-tccatctcttggccacgggaaac 206
           ||| | |||||||||||||||||||||
Sbjct: 382 gaatttcatctcttggccacgggaaac 356
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>emb|X05590.1|HVTHIOR5 Barley mRNA for leaf-specific thionin (clone DD3)
          Length = 491

 Score =  272 bits (137), Expect = 4e-70
 Identities = 189/207 (91%), Gaps = 1/207 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactaagatgatacatttgcttcgatctggtgatggtttcaagattgnggnacagaaaat 60
           ||||||||||||||||||||||||||||||||||||| |||||||||  | |||||||||
Sbjct: 403 aactaagatgatacatttgcttcgatctggtgatggtatcaagattgttgaacagaaaat 344

                                                                       
Query: 61  nccaaaacgaccttggccatagaaatcatgcccaagaaggcatgattaggcttcaacaga 120
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gaaaaaacgaccttggccatagaaatcatgcccaagaaggcatgattaggcttcaacaga 284

                                                                       
Query: 121 ctgaatgacatcaccatcattacagaaacgggcncntgcgttgctgnttttttccatgtc 180
           ||||||||| ||||||||||||||||||||||| | ||||||||||     | |||||||
Sbjct: 283 ctgaatgacttcaccatcattacagaaacgggcacatgcgttgctgcagagtcccatgtc 224

                                      
Query: 181 gaa-tccatctcttggccacgggaaac 206
           ||| | |||||||||||||||||||||
Sbjct: 223 gaatttcatctcttggccacgggaaac 197
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>emb|X05589.1|HVTHIOR4 Barley mRNA for leaf-specific thionin (clone DG3)
          Length = 544

 Score =  264 bits (133), Expect = 1e-67
 Identities = 188/207 (90%), Gaps = 1/207 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactaagatgatacatttgcttcgatctggtgatggtttcaagattgnggnacagaaaat 60
           |||||||||||||||||||||||||| |||||||||| |||||||||  | |||||||||
Sbjct: 489 aactaagatgatacatttgcttcgatgtggtgatggtatcaagattgttgaacagaaaat 430

                                                                       
Query: 61  nccaaaacgaccttggccatagaaatcatgcccaagaaggcatgattaggcttcaacaga 120
             |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 429 gacaaaacgaccttggccatagaaatcatgcccaagaaggcatgattaggcttcaagaga 370

                                                                       
Query: 121 ctgaatgacatcaccatcattacagaaacgggcncntgcgttgctgnttttttccatgtc 180
           ||||||||| ||||||||||||||||||||||| | ||||||||||     | |||||||
Sbjct: 369 ctgaatgacttcaccatcattacagaaacgggcacatgcgttgctgcagagtcccatgtc 310

                                      
Query: 181 gaa-tccatctcttggccacgggaaac 206
           ||| | |||||||||||||||||||||
Sbjct: 309 gaatttcatctcttggccacgggaaac 283
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>gb|M19046.1|BLYTHNA Barley leaf specific thionin mRNA, complete cds, clone pKG2872
          Length = 540

 Score =  236 bits (119), Expect = 2e-59
 Identities = 168/185 (90%), Gaps = 1/185 (0%)
 Strand = Plus / Minus

                                                                       
Query: 23  cgatctggtgatggtttcaagattgnggnacagaaaatnccaaaacgaccttggccatag 82
           ||||||||||||||| |||||||||  | |||||||||  ||||||||||||||||||||
Sbjct: 540 cgatctggtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatag 481

                                                                       
Query: 83  aaatcatgcccaagaaggcatgattaggcttcaacagactgaatgacatcaccatcatta 142
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 480 aaatcatgcccaagaaggcatgattaggcttcaacagactgaatgacttcaccatcatta 421

                                                                       
Query: 143 cagaaacgggcncntgcgttgctgnttttttccatgtcgaa-tccatctcttggccacgg 201
           ||||||||||| | ||||||||||     | |||||||||| | ||||||||||||||||
Sbjct: 420 cagaaacgggcacatgcgttgctgcagagtcccatgtcgaatttcatctcttggccacgg 361

                
Query: 202 gaaac 206
           |||||
Sbjct: 360 gaaac 356
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>gb|L36883.1|BLYBTH7T Hordeum vulgare thionin (BTH7) gene, complete cds
          Length = 2259

 Score =  226 bits (114), Expect = 2e-56
 Identities = 166/184 (90%), Gaps = 1/184 (0%)
 Strand = Plus / Minus

                                                                        
Query: 24   gatctggtgatggtttcaagattgnggnacagaaaatnccaaaacgaccttggccataga 83
            |||||||||||||| |||||||||  | |||||||||  |||||||||||||||||||||
Sbjct: 2237 gatctggtgatggtatcaagattgttgaacagaaaatgacaaaacgaccttggccataga 2178

                                                                        
Query: 84   aatcatgcccaagaaggcatgattaggcttcaacagactgaatgacatcaccatcattac 143
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2177 aatcatgcccaagaaggcatgattaggcttcaacagactgaatgacttcaccatcattac 2118

                                                                        
Query: 144  agaaacgggcncntgcgttgctgnttttttccatgtcgaa-tccatctcttggccacggg 202
            |||||||||| | ||||||||||     | ||||||| || | |||||||||||||||||
Sbjct: 2117 agaaacgggcacatgcgttgctgcagagtcccatgtcaaatttcatctcttggccacggg 2058

                
Query: 203  aaac 206
            ||||
Sbjct: 2057 aaac 2054
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>gb|L36882.1|BLYBTH6T Hordeum vulgare thionin (bth6) gene, complete cds
          Length = 2406

 Score =  167 bits (84), Expect = 2e-38
 Identities = 127/141 (90%), Gaps = 1/141 (0%)
 Strand = Plus / Minus

                                                                        
Query: 67   acgaccttggccatagaaatcatgcccaagaaggcatgattaggcttcaacagactgaat 126
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2171 acgaccttggccatagaaatcatgcacaagaaggcatgattaggcttcaacagactgaat 2112

                                                                        
Query: 127  gacatcaccatcattacagaaacgggcncntgcgttgctgnttttttccatgtcgaa-tc 185
            |||  |||||||||||||||||||||| | ||||||||||     | |||||||||| | 
Sbjct: 2111 gactgcaccatcattacagaaacgggcacatgcgttgctgcagagtcccatgtcgaattt 2052

                                 
Query: 186  catctcttggccacgggaaac 206
            |||||||||||||||| ||||
Sbjct: 2051 catctcttggccacggaaaac 2031
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>emb|X05587.1|HVTHIOR2 Barley mRNA for leaf-specific thionin (clone DC4)
          Length = 658

 Score =  165 bits (83), Expect = 7e-38
 Identities = 175/205 (85%), Gaps = 2/205 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   taagatgatacatttgcttcgat-ctggtgatggtttcaagattgnggnacagaaaatnc 62
           ||||||||||||||| ||||||| | | ||||||| ||||||||     | | |||||  
Sbjct: 542 taagatgatacatttccttcgatacagctgatggtatcaagattattcaagacaaaatga 483

                                                                       
Query: 63  caaaacgaccttggccatagaaatcatgcccaagaaggcatgattaggcttcaacagact 122
           ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 482 caatacgaccttggccatagaaatcatgcacaagaaggcatgattaggcttcaacagact 423

                                                                       
Query: 123 gaatgacatcaccatcattacagaaacgggcncntgcgttgctgnttttttccatgtcga 182
           |||||||  ||||||||||||| |||||||| | ||||||||||     | |||||||||
Sbjct: 422 gaatgactgcaccatcattacaaaaacgggcacatgcgttgctgcagagtcccatgtcga 363

                                    
Query: 183 a-tccatctcttggccacgggaaac 206
           | | |||||||||||||||| ||||
Sbjct: 362 atttcatctcttggccacggaaaac 338
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>emb|X05576.1|HVTHIOR1 Barley mRNA for leaf-specific thionin (clone DB4)
          Length = 637

 Score =  159 bits (80), Expect = 4e-36
 Identities = 126/141 (89%), Gaps = 1/141 (0%)
 Strand = Plus / Minus

                                                                       
Query: 67  acgaccttggccatagaaatcatgcccaagaaggcatgattaggcttcaacagactgaat 126
           |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 471 acgaccatggccatagaaatcatgcacaagaaggcatgattaggcttcaacagactgaat 412

                                                                       
Query: 127 gacatcaccatcattacagaaacgggcncntgcgttgctgnttttttccatgtcgaa-tc 185
           |||  |||||||||||||||||||||| | ||||||||||     | |||||||||| | 
Sbjct: 411 gactgcaccatcattacagaaacgggcacatgcgttgctgcagagtcccatgtcgaattt 352

                                
Query: 186 catctcttggccacgggaaac 206
           |||||||||||||||| ||||
Sbjct: 351 catctcttggccacggaaaac 331
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>emb|X05588.1|HVTHIOR3 Barley mRNA for leaf-specific thionin (clone DF2)
          Length = 453

 Score =  153 bits (77), Expect = 3e-34
 Identities = 142/164 (86%), Gaps = 1/164 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   taagatgatacatttgcttcgat-ctggtgatggtttcaagattgnggnacagaaaatnc 62
           ||||||||||||||| ||||||| | | ||||||| ||||||||     | | |||||  
Sbjct: 362 taagatgatacatttccttcgatacagctgatggtatcaagattattcaagacaaaatga 303

                                                                       
Query: 63  caaaacgaccttggccatagaaatcatgcccaagaaggcatgattaggcttcaacagact 122
           ||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 302 caatacgaccttggccatagaaatcatgcacaagaaggcatgattaggattcaacagact 243

                                                       
Query: 123 gaatgacatcaccatcattacagaaacgggcncntgcgttgctg 166
           |||||||  ||||||||||||| |||||||| | ||||||||||
Sbjct: 242 gaatgactgcaccatcattacaaaaacgggcacatgcgttgctg 199
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>emb|AJ508712.1|HVU508712 Hordeum vulgare mRNA for putative thionin
          Length = 414

 Score =  121 bits (61), Expect = 1e-24
 Identities = 92/102 (90%), Gaps = 1/102 (0%)
 Strand = Plus / Minus

                                                                       
Query: 106 ttaggcttcaacagactgaatgacatcaccatcattacagaaacgggcncntgcgttgct 165
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 414 ttaggcttcaacagactgaatgacatcaccatcattacagaaacgggcacatgcgttgct 355

                                                     
Query: 166 gnttttttccatgtcgaa-tccatctcttggccacgggaaac 206
           |     | |||||||||| | |||||||||||||||||||||
Sbjct: 354 gcagagtcccatgtcgaatttcatctcttggccacgggaaac 313
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>emb|BX248402.13| Zebrafish DNA sequence from clone CH211-226P14 in linkage group 14,
             complete sequence
          Length = 137130

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 125   atgacatcaccatcattacagaaac 149
             |||||||||||||||||||| ||||
Sbjct: 27486 atgacatcaccatcattacataaac 27462
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>emb|BX004990.12| Zebrafish DNA sequence from clone DKEY-12H12, complete sequence
          Length = 201461

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 125    atgacatcaccatcattacagaaac 149
              |||||||||||||||||||| ||||
Sbjct: 188699 atgacatcaccatcattacataaac 188723
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>dbj|AB072342.1| Avena sativa mRNA for thionin Asthi5, complete cds
          Length = 641

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                        
Query: 69  gaccttggccatagaaatcatgcccaagaaggcatgattaggctt 113
           ||||| ||||| ||||||||||| |||||  ||||||||| ||||
Sbjct: 496 gacctcggccaaagaaatcatgcacaagagtgcatgattaagctt 452
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>dbj|AB072341.1| Avena sativa mRNA for thionin Asthi4, complete cds
          Length = 678

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                            
Query: 63  caaaacgaccttggccatagaaatcatgcccaagaaggcatgattaggc 111
           |||||||||| ||||||||||||| | || | |||  ||||||||||||
Sbjct: 553 caaaacgaccatggccatagaaataaggcacgagagtgcatgattaggc 505
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>gb|AC101677.8| Mus musculus chromosome 10, clone RP23-138N1, complete sequence
          Length = 206087

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 125   atgacatcaccatcattaca 144
             ||||||||||||||||||||
Sbjct: 32100 atgacatcaccatcattaca 32119
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>gb|AC150418.2| Branchiostoma floridae clone CH302-67G11, complete sequence
          Length = 154273

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 172    ttccatgtcgaatccatctcttgg 195
              |||||||||||||||| |||||||
Sbjct: 145157 ttccatgtcgaatccaactcttgg 145134
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>gb|AC022395.4| Homo sapiens chromosome 10 clone RP11-354M20, complete sequence
          Length = 193669

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     aactaagatgatacatttgc 20
             ||||||||||||||||||||
Sbjct: 96493 aactaagatgatacatttgc 96512
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>gb|AC158631.6| Mus musculus 10 BAC RP23-424I1 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 206425

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 125   atgacatcaccatcattaca 144
             ||||||||||||||||||||
Sbjct: 52069 atgacatcaccatcattaca 52050
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>gb|AC133435.2| Homo sapiens 3 BAC RP11-343B5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 116556

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 117   cagactgaatgacatcacca 136
             ||||||||||||||||||||
Sbjct: 64821 cagactgaatgacatcacca 64802
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>gb|AC155325.5| Mus musculus 10 BAC RP24-86C24 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 171402

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 125   atgacatcaccatcattaca 144
             ||||||||||||||||||||
Sbjct: 34723 atgacatcaccatcattaca 34704
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>gb|AC005879.3|AC005879 citb_287_c_20, complete sequence
          Length = 190982

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     aactaagatgatacatttgc 20
             ||||||||||||||||||||
Sbjct: 32396 aactaagatgatacatttgc 32377
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>gb|AY487430.1| Uncultured organism clone 2A15 nitrilase (BD5338) gene, complete
           cds
          Length = 1047

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 71  ccttggccatagaaatcatgccca 94
           |||||||||| |||||||||||||
Sbjct: 862 ccttggccattgaaatcatgccca 839


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,392,955
Number of Sequences: 3902068
Number of extensions: 1392955
Number of successful extensions: 94767
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94717
Number of HSP's gapped (non-prelim): 50
length of query: 222
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 200
effective length of database: 17,147,199,772
effective search space: 3429439954400
effective search space used: 3429439954400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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