ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags16e03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GLPQ1_ARATH (Q9FJ62) Probable glycerophosphoryl diester phosphod... 105 1e-22
2GLPQ2_ARATH (Q9SZ11) Probable glycerophosphoryl diester phosphod... 102 8e-22
3MOSA_MAIZE (P15268) Autonomous transposable element EN-1 mosaic ... 36 0.12
4CAPS1_MOUSE (Q80TJ1) Calcium-dependent secretion activator 1 (Ca... 32 1.7
5MECT1_HUMAN (Q6UUV9) Mucoepidermoid carcinoma translocated prote... 31 2.9
6MAF_AVIS4 (P23091) Transforming protein Maf 31 2.9
7CAPS1_RAT (Q62717) Calcium-dependent secretion activator 1 (Calc... 31 3.8
8CTF1_RAT (Q63086) Cardiotrophin-1 (CT-1) 30 5.0
9CTF1_MOUSE (Q60753) Cardiotrophin-1 (CT-1) 30 5.0
10MRG15_DROME (Q9Y0I1) Protein MRG15 30 5.0
11MECT1_MOUSE (Q68ED7) Mucoepidermoid carcinoma translocated prote... 30 5.0
12QUEA_BACHD (Q9KDI6) S-adenosylmethionine:tRNA ribosyltransferase... 30 5.0
13PO4F2_MOUSE (Q63934) POU domain, class 4, transcription factor 2... 30 6.5
14IRS1_HUMAN (P35568) Insulin receptor substrate 1 (IRS-1) 30 8.5
15CY551_CHLVI (P42426) Photosynthetic reaction center cytochrome c... 30 8.5

>GLPQ1_ARATH (Q9FJ62) Probable glycerophosphoryl diester phosphodiesterase 1|
           precursor (EC 3.1.4.46)
          Length = 766

 Score =  105 bits (262), Expect = 1e-22
 Identities = 62/128 (48%), Positives = 76/128 (59%), Gaps = 3/128 (2%)
 Frame = -3

Query: 664 LPVYVYLLMNEFLSQPYDFFSDATAQINALVHKGVEGGGVDGLITDFPGTAHRYKLNSCR 485
           LPVYV +  NEF+SQP+DFF+DAT +IN+     V G G++G IT+FP TA RYK NSC 
Sbjct: 618 LPVYVEVFRNEFVSQPWDFFADATVEINS----HVTGAGINGTITEFPLTAARYKRNSCL 673

Query: 484 KMGDKTPYYMLPPQRGGLLGVIPDKXXXXXXXXXXPVLTDSDVAEPPLPPVS---NTTGP 314
              D  P YM+P Q  GLL ++             PV TD+DV EPPLPPVS    TT P
Sbjct: 674 TRKD-VPPYMIPVQPAGLLTIV-SPASLPPAEAPSPVFTDADVTEPPLPPVSARAPTTTP 731

Query: 313 APSHAASR 290
            P     +
Sbjct: 732 GPQSTGEK 739



to top

>GLPQ2_ARATH (Q9SZ11) Probable glycerophosphoryl diester phosphodiesterase 2|
           precursor (EC 3.1.4.46)
          Length = 759

 Score =  102 bits (255), Expect = 8e-22
 Identities = 62/130 (47%), Positives = 76/130 (58%)
 Frame = -3

Query: 664 LPVYVYLLMNEFLSQPYDFFSDATAQINALVHKGVEGGGVDGLITDFPGTAHRYKLNSCR 485
           LPVYV L  NEFLSQPYDFF+DAT +IN+     + G G++G IT+FP TA RYK N C 
Sbjct: 611 LPVYVELFQNEFLSQPYDFFADATVEINSY----ITGAGINGTITEFPFTAARYKRNLCL 666

Query: 484 KMGDKTPYYMLPPQRGGLLGVIPDKXXXXXXXXXXPVLTDSDVAEPPLPPVSNTTGPAPS 305
              +  P YM P Q G LL ++             PV TD+DV EPPLPPV   T  AP+
Sbjct: 667 GRKETIP-YMAPAQPGALLTLV-SPTAFPPAEAPNPVFTDADVTEPPLPPV---TAKAPT 721

Query: 304 HAASRIRTDA 275
            +     T+A
Sbjct: 722 SSPGTPSTNA 731



to top

>MOSA_MAIZE (P15268) Autonomous transposable element EN-1 mosaic protein|
           (Suppressor-mutator system protein) (SPM)
          Length = 621

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = +3

Query: 141 HHPQILVQPNQKEK*IARYIEQVAEKNGPQS 233
           +HP+IL   N  EK +ARYI+ V EKNGP +
Sbjct: 363 NHPEILNDSNATEK-LARYIDNVREKNGPDT 392



to top

>CAPS1_MOUSE (Q80TJ1) Calcium-dependent secretion activator 1 (Calcium-dependent|
           activator protein for secretion 1) (CAPS-1)
          Length = 1355

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = -2

Query: 497 ELVQEDGGQDALLHAASPARRPP----WGHTG*SSIATSNGPNAGVDGLGRGGAAPSS 336
           E+++E+ G+D L  AAS AR  P     G  G + +  S G  AGV   G GG+  SS
Sbjct: 13  EILEEESGKDVLGSAASGARLSPSRTSEGSAGSAGMGGS-GAGAGVGAGGGGGSGASS 69



to top

>MECT1_HUMAN (Q6UUV9) Mucoepidermoid carcinoma translocated protein 1|
           (Transducer of regulated cAMP response element-binding
           protein 1) (Transducer of CREB protein 1)
          Length = 634

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -2

Query: 395 SNGPNAGVDGLGRGGAAPSSCEQHHRSGALPRRLQNTHGRRRDAA 261
           +N  + G+ G G+G + P S  QH  +G  P  L +T  RR+ A+
Sbjct: 283 ANLTHLGIGGAGQGMSTPGSSPQHRPAGVSPLSL-STEARRQQAS 326



to top

>MAF_AVIS4 (P23091) Transforming protein Maf|
          Length = 369

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 23/75 (30%), Positives = 27/75 (36%)
 Frame = -2

Query: 536 HHRFPRDGP*IQTELVQEDGGQDALLHAASPARRPPWGHTG*SSIATSNGPNAGVDGLGR 357
           HH  P  G           GG     H A+P   PP       S A+S+   +G  G G 
Sbjct: 177 HHHHPHHGG---------GGGGGGHPHGAAPGSAPP-------SSASSSAAGSGGGGGGG 220

Query: 356 GGAAPSSCEQHHRSG 312
           GG A      HH  G
Sbjct: 221 GGGAGGLHHPHHGGG 235



to top

>CAPS1_RAT (Q62717) Calcium-dependent secretion activator 1 (Calcium-dependent|
           activator protein for secretion 1) (CAPS-1) (rCAPS)
          Length = 1289

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -2

Query: 497 ELVQEDGGQDALLHAASPAR-RPPWGHTG*SSIATSNGPNAGVDGLGRGGAAPSSCEQHH 321
           E+++E+ G++ L  AAS AR  P   + G +  A   G  AG  G+G GG   S      
Sbjct: 13  EILEEESGKEVLGSAASGARLSPSRTNEGSAGSAGMGGSGAGA-GVGAGGGGGSGASSGG 71

Query: 320 RSGAL 306
            +G L
Sbjct: 72  GAGGL 76



to top

>CTF1_RAT (Q63086) Cardiotrophin-1 (CT-1)|
          Length = 203

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
 Frame = -3

Query: 349 PPLPPVSNTTGPAPSHA----ASRIRTDAGVM 266
           PP  P++  +GPAPSHA    + R+R DA  +
Sbjct: 63  PPRLPLAGLSGPAPSHAGLPVSERLRQDAAAL 94



to top

>CTF1_MOUSE (Q60753) Cardiotrophin-1 (CT-1)|
          Length = 203

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
 Frame = -3

Query: 349 PPLPPVSNTTGPAPSHA----ASRIRTDAGVM 266
           PP  P++  +GPAPSHA    + R+R DA  +
Sbjct: 63  PPRLPLAGLSGPAPSHAGLPVSERLRQDAAAL 94



to top

>MRG15_DROME (Q9Y0I1) Protein MRG15|
          Length = 424

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 16/26 (61%), Positives = 17/26 (65%), Gaps = 4/26 (15%)
 Frame = -3

Query: 373 LTDSDVAEPPLPPVSN----TTGPAP 308
           LT SDVAE PLPP +     TT PAP
Sbjct: 217 LTGSDVAEKPLPPTTTPSTPTTEPAP 242



to top

>MECT1_MOUSE (Q68ED7) Mucoepidermoid carcinoma translocated protein 1 homolog|
          Length = 630

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = -2

Query: 410 SSIATSNGPNAGVDGLGRGGAAPSSCEQHHRSGALPRRLQNTHGRRRDA 264
           SS +T +  + GV G G+G   PSS  QH  +   P  L +T  RR+ A
Sbjct: 274 SSSSTGSLAHLGVGGAGQGMNTPSSSPQHRPAVVSPLSL-STEARRQQA 321



to top

>QUEA_BACHD (Q9KDI6) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC|
           5.-.-.-) (Queuosine biosynthesis protein queA)
          Length = 347

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 634 EFLSQPYDFFSDATAQINALVHKGVEGGGVDGLITDF 524
           E + Q +D F + +   +  ++ G E  G+DGLIT+F
Sbjct: 261 ETIRQEHDEFVETSGWTSIFIYPGYEFKGIDGLITNF 297



to top

>PO4F2_MOUSE (Q63934) POU domain, class 4, transcription factor 2|
           (Brain-specific homeobox/POU domain protein 3B) (Brn-3B)
           (Brn-3.2)
          Length = 411

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = -2

Query: 461 LHAASPARRPPWGHTG*SSIATSNGPNAGVDGLGRGGAAPSSCEQHHRSG 312
           LH+ASP    P   +  S  ++SN    G  G G GG   SS      SG
Sbjct: 29  LHSASPGSSAPAAPSASSPSSSSNAGGGGGGGGGGGGGGRSSSSSSSGSG 78



to top

>IRS1_HUMAN (P35568) Insulin receptor substrate 1 (IRS-1)|
          Length = 1242

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +3

Query: 225  PQSQISREAHSTSSITPASVRILEAAWEGAGPVVLLTGGRGGSATSESV 371
            PQ    R +  T S TP++ R+      GAG  V   GG G S++SE V
Sbjct: 1092 PQGCRRRHSSETFSSTPSATRVGNTVPFGAGAAV--GGGGGSSSSSEDV 1138



to top

>CY551_CHLVI (P42426) Photosynthetic reaction center cytochrome c-551|
           (Cytochrome c551)
          Length = 206

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 4/37 (10%)
 Frame = -3

Query: 334 VSNTTG--PAPSHAA--SRIRTDAGVMLLVLCASLLI 236
           VS  TG  PAP+H+A  + +R+  G  LL+ CASL+I
Sbjct: 27  VSFLTGYSPAPNHSAILTPLRSFMGWFLLIFCASLII 63


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,266,247
Number of Sequences: 219361
Number of extensions: 1973617
Number of successful extensions: 6152
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6145
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6427774254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top