ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15o20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IF2_NITWN (Q3SWP9) Translation initiation factor IF-2 30 4.0
2SPAG6_HUMAN (O75602) Sperm-associated antigen 6 (PF16 protein ho... 30 6.9

>IF2_NITWN (Q3SWP9) Translation initiation factor IF-2|
          Length = 871

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +2

Query: 53  VFVDDGYFPITNWNTSEMLAHGKTETVSKIIAGKVIREPQCK-ERNHVQVQVHDQAADSL 229
           V  DDG  P     T E + H K   V  IIA   I +P+ K ER   ++  H+   +S+
Sbjct: 449 VAADDGVMP----QTIEAINHAKAAKVPMIIAINKIDKPEAKPERVRTELLQHEVQVESM 504

Query: 230 *GE 238
            G+
Sbjct: 505 GGQ 507



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>SPAG6_HUMAN (O75602) Sperm-associated antigen 6 (PF16 protein homolog) (Sperm|
           flagellar protein) (Repro-SA-1)
          Length = 509

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 14/25 (56%), Positives = 20/25 (80%)
 Frame = -3

Query: 557 YVKSAASTVVKRPLAQHTPELTAMV 483
           YVK  AST++ R +A+HTPEL+ +V
Sbjct: 266 YVKKNASTLI-REIAKHTPELSQLV 289


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,158,904
Number of Sequences: 219361
Number of extensions: 1227704
Number of successful extensions: 2872
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2871
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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