ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags16d16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SM3L3_ARATH (Q9FIY7) Putative SWI/SNF-related matrix-associated ... 30 4.6
2E310_ADE07 (P15134) Early E3B 10.4 kDa protein precursor 29 7.9
3E310_ADE03 (P11318) Early E3B 10.4 kDa protein precursor 29 7.9

>SM3L3_ARATH (Q9FIY7) Putative SWI/SNF-related matrix-associated actin-dependent|
            regulator of chromatin subfamily A member 3-like 3 (EC
            3.6.1.-) (SMARCA3-like protein 3)
          Length = 1277

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 116  SWSSPAVFTCPICRCLLSNCQITS 187
            SW SP+   CPICR +L   ++ S
Sbjct: 1067 SWRSPSCGLCPICRTILKRTELIS 1090



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>E310_ADE07 (P15134) Early E3B 10.4 kDa protein precursor|
          Length = 91

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = -3

Query: 377 FNVAVCKFWSCRQA*QPLLLSVLLFGPFSLIVDAGDLACISCVCTIICSYVPIVERCVYL 198
           F + +C F  C         S    GPF+       + CI CVC+I+C  +   +   ++
Sbjct: 8   FTILICAFNVCATFTAVATASPDCIGPFASYALFAFVTCI-CVCSIVCLVINFFQLVDWI 66

Query: 197 VIR 189
            +R
Sbjct: 67  FVR 69



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>E310_ADE03 (P11318) Early E3B 10.4 kDa protein precursor|
          Length = 91

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = -3

Query: 377 FNVAVCKFWSCRQA*QPLLLSVLLFGPFSLIVDAGDLACISCVCTIICSYVPIVERCVYL 198
           F + +C F  C         S    GPF+       + CI CVC+I+C  +   +   ++
Sbjct: 8   FTILICPFNVCATFTAVATASPDCIGPFASYALFAFVTCI-CVCSIVCLVINFFQLVDWI 66

Query: 197 VIR 189
            +R
Sbjct: 67  FVR 69


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,568,123
Number of Sequences: 219361
Number of extensions: 1222992
Number of successful extensions: 2599
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2599
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4545742239
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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