ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags16d16 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 107 bits (54), Expect = 4e-20 Identities = 168/202 (83%), Gaps = 8/202 (3%) Strand = Plus / Minus Query: 71 actataacaattttacaatcttacaacagggcgaggtctccaggttcctggt-----ctt 125 |||||| |||||||||||| |||||| |||| | || ||||||||||||||| ||| Sbjct: 6252261 actatagcaattttacaatattacaatagggtggggcctccaggttcctggtctggtctt 6252202 Query: 126 caccggctgtctttacttgcccaatttgcaggtgtcttctatcgaattgtcagataactt 185 |||||| |||||| | |||||| ||||||| ||||||||| || ||| |||||| || Sbjct: 6252201 caccggttgtcttgcttcccccaatgtgcaggtttcttctatccaa-tgttagataattt 6252143 Query: 186 cc-gacggatgactaag-taaacgcagcgctctacaataggtacataactgcaaataatg 243 || | |||| || | |||||||||| |||||||||| ||||||||||||||| |||| Sbjct: 6252142 ccagctcaatgattagggtaaacgcagcactctacaataagtacataactgcaaacaatg 6252083 Query: 244 gtacagacgcatgaaatgcatg 265 |||||||||||||||||||||| Sbjct: 6252082 gtacagacgcatgaaatgcatg 6252061 Score = 105 bits (53), Expect = 2e-19 Identities = 62/65 (95%) Strand = Plus / Minus Query: 451 ctggcctatagatgttacgatttgggtgactgtgcagcatcagatccatctgctgatgaa 510 ||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||| Sbjct: 6248129 ctggcctatagatgttacgttctgggtgactgtgcagcatcagagccatctgctgatgaa 6248070 Query: 511 ctatc 515 ||||| Sbjct: 6248069 ctatc 6248065
>dbj|AP003104.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0038J17 Length = 180186 Score = 107 bits (54), Expect = 4e-20 Identities = 168/202 (83%), Gaps = 8/202 (3%) Strand = Plus / Minus Query: 71 actataacaattttacaatcttacaacagggcgaggtctccaggttcctg-----gtctt 125 |||||| |||||||||||| |||||| |||| | || ||||||||||||| ||||| Sbjct: 114459 actatagcaattttacaatattacaatagggtggggcctccaggttcctggtctggtctt 114400 Query: 126 caccggctgtctttacttgcccaatttgcaggtgtcttctatcgaattgtcagataactt 185 |||||| |||||| | |||||| ||||||| ||||||||| || ||| |||||| || Sbjct: 114399 caccggttgtcttgcttcccccaatgtgcaggtttcttctatccaa-tgttagataattt 114341 Query: 186 cc-gacggatgactaag-taaacgcagcgctctacaataggtacataactgcaaataatg 243 || | |||| || | |||||||||| |||||||||| ||||||||||||||| |||| Sbjct: 114340 ccagctcaatgattagggtaaacgcagcactctacaataagtacataactgcaaacaatg 114281 Query: 244 gtacagacgcatgaaatgcatg 265 |||||||||||||||||||||| Sbjct: 114280 gtacagacgcatgaaatgcatg 114259 Score = 105 bits (53), Expect = 2e-19 Identities = 62/65 (95%) Strand = Plus / Minus Query: 451 ctggcctatagatgttacgatttgggtgactgtgcagcatcagatccatctgctgatgaa 510 ||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||| Sbjct: 110327 ctggcctatagatgttacgttctgggtgactgtgcagcatcagagccatctgctgatgaa 110268 Query: 511 ctatc 515 ||||| Sbjct: 110267 ctatc 110263
>dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0515G01 Length = 175072 Score = 107 bits (54), Expect = 4e-20 Identities = 168/202 (83%), Gaps = 8/202 (3%) Strand = Plus / Minus Query: 71 actataacaattttacaatcttacaacagggcgaggtctccaggttcctg-----gtctt 125 |||||| |||||||||||| |||||| |||| | || ||||||||||||| ||||| Sbjct: 23327 actatagcaattttacaatattacaatagggtggggcctccaggttcctggtctggtctt 23268 Query: 126 caccggctgtctttacttgcccaatttgcaggtgtcttctatcgaattgtcagataactt 185 |||||| |||||| | |||||| ||||||| ||||||||| || ||| |||||| || Sbjct: 23267 caccggttgtcttgcttcccccaatgtgcaggtttcttctatccaa-tgttagataattt 23209 Query: 186 cc-gacggatgactaag-taaacgcagcgctctacaataggtacataactgcaaataatg 243 || | |||| || | |||||||||| |||||||||| ||||||||||||||| |||| Sbjct: 23208 ccagctcaatgattagggtaaacgcagcactctacaataagtacataactgcaaacaatg 23149 Query: 244 gtacagacgcatgaaatgcatg 265 |||||||||||||||||||||| Sbjct: 23148 gtacagacgcatgaaatgcatg 23127 Score = 105 bits (53), Expect = 2e-19 Identities = 62/65 (95%) Strand = Plus / Minus Query: 451 ctggcctatagatgttacgatttgggtgactgtgcagcatcagatccatctgctgatgaa 510 ||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||| Sbjct: 19195 ctggcctatagatgttacgttctgggtgactgtgcagcatcagagccatctgctgatgaa 19136 Query: 511 ctatc 515 ||||| Sbjct: 19135 ctatc 19131
>dbj|AK060604.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-B01, full insert sequence Length = 987 Score = 107 bits (54), Expect = 4e-20 Identities = 66/70 (94%) Strand = Plus / Minus Query: 446 aagatctggcctatagatgttacgatttgggtgactgtgcagcatcagatccatctgctg 505 ||||||||||||||||||| |||| | |||||||||||||||||||||| |||||||||| Sbjct: 520 aagatctggcctatagatgctacgttctgggtgactgtgcagcatcagagccatctgctg 461 Query: 506 atgaactatc 515 |||||||||| Sbjct: 460 atgaactatc 451 Score = 105 bits (53), Expect = 2e-19 Identities = 62/65 (95%) Strand = Plus / Minus Query: 201 gtaaacgcagcgctctacaataggtacataactgcaaataatggtacagacgcatgaaat 260 ||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||| Sbjct: 739 gtaaacgcagcactctacaataagtacataactgcaaacaatggtacagacgcatgaaat 680 Query: 261 gcatg 265 ||||| Sbjct: 679 gcatg 675 Score = 60.0 bits (30), Expect = 8e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 71 actataacaattttacaatcttacaacagggcgaggtctccaggttcctggtct 124 |||||| |||||||||||| |||||| |||| | || ||||||||||||||||| Sbjct: 875 actatagcaattttacaatattacaatagggtggggcctccaggttcctggtct 822
>ref|NM_188433.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1524 Score = 105 bits (53), Expect = 2e-19 Identities = 62/65 (95%) Strand = Plus / Minus Query: 451 ctggcctatagatgttacgatttgggtgactgtgcagcatcagatccatctgctgatgaa 510 ||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||| Sbjct: 1495 ctggcctatagatgttacgttctgggtgactgtgcagcatcagagccatctgctgatgaa 1436 Query: 511 ctatc 515 ||||| Sbjct: 1435 ctatc 1431
>gb|AY111267.1| Zea mays CL44621_1 mRNA sequence Length = 634 Score = 91.7 bits (46), Expect = 2e-15 Identities = 55/58 (94%) Strand = Plus / Plus Query: 72 ctataacaattttacaatcttacaacagggcgaggtctccaggttcctggtcttcacc 129 ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 29 ctatagcaattgtacaatcttacaacagggcgaggcctccaggttcctggtcttcacc 86 Score = 87.7 bits (44), Expect = 4e-14 Identities = 92/108 (85%) Strand = Plus / Plus Query: 449 atctggcctatagatgttacgatttgggtgactgtgcagcatcagatccatctgctgatg 508 ||||||| |||||||| |||| | ||||||| || |||||||||| ||||||||||||| Sbjct: 400 atctggcttatagatgctacgttctgggtgattgcccagcatcagaaccatctgctgatg 459 Query: 509 aactatcagaatccgtatcactggaggaagaccctgattcactgctag 556 ||||||| | ||||||||||| ||||| || || || |||||||||| Sbjct: 460 aactatctgtgtccgtatcactagaggatgaacccgagtcactgctag 507
>gb|AC004822.1|AC004822 Homo sapiens PAC clone RP1-170D19 from Xq23, complete sequence Length = 127824 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 509 aactatcagaatccgtatcact 530 |||||||||||||||||||||| Sbjct: 78308 aactatcagaatccgtatcact 78329
>gb|AC079273.5| Mus musculus strain C57BL/6J chromosome 12 clone RP23-373N04, complete sequence Length = 175987 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 43 ttccaaaataaacaaaagaaa 63 ||||||||||||||||||||| Sbjct: 66427 ttccaaaataaacaaaagaaa 66447
>tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy chain variable region locus, strain C57BL/6 Length = 2500000 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 43 ttccaaaataaacaaaagaaa 63 ||||||||||||||||||||| Sbjct: 2191393 ttccaaaataaacaaaagaaa 2191373
>emb|AJ851868.2| Mus musculus immunoglobulin heavy chain locus constant region and partial variable region, strain 129/Sv Length = 1382053 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 43 ttccaaaataaacaaaagaaa 63 ||||||||||||||||||||| Sbjct: 405136 ttccaaaataaacaaaagaaa 405116
>gb|AC112800.6| Rattus norvegicus X BAC CH230-275F1 (Children's Hospital Oakland Research Institute) complete sequence Length = 147560 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 ccaaaataaacaaaagaaat 64 |||||||||||||||||||| Sbjct: 118150 ccaaaataaacaaaagaaat 118131
>gb|AC092246.1|AC092246 Drosophila melanogaster, chromosome 2L, region 36X-36X, BAC clone BACR33C24, complete sequence Length = 202495 Score = 40.1 bits (20), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 47 aaaataaacaaaagaaatnaacc 69 |||||||||||||||||| |||| Sbjct: 118547 aaaataaacaaaagaaataaacc 118525
>gb|AC152942.2| Ornithorhynchus anatinus chromosome UNK clone OABb-193A1, complete sequence Length = 139887 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 caattttacaatcttacaac 97 |||||||||||||||||||| Sbjct: 114428 caattttacaatcttacaac 114447
>gb|AE003645.4| Drosophila melanogaster chromosome 2L, section 54 of 83 of the complete sequence Length = 262207 Score = 40.1 bits (20), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 47 aaaataaacaaaagaaatnaacc 69 |||||||||||||||||| |||| Sbjct: 149101 aaaataaacaaaagaaataaacc 149079
>dbj|AP003087.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-594014, complete sequences Length = 100403 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 530 tggaggaagaccctgattca 549 |||||||||||||||||||| Sbjct: 23256 tggaggaagaccctgattca 23275
>dbj|AP001132.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-712D22, complete sequences Length = 170371 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 530 tggaggaagaccctgattca 549 |||||||||||||||||||| Sbjct: 156921 tggaggaagaccctgattca 156940 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,442,477 Number of Sequences: 3902068 Number of extensions: 4442477 Number of successful extensions: 86096 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86003 Number of HSP's gapped (non-prelim): 93 length of query: 556 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 533 effective length of database: 17,143,297,704 effective search space: 9137377676232 effective search space used: 9137377676232 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
