ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags16d15 |
|---|---|
| Clone Library Name | barley_pub |
>CCDC4_HUMAN (Q6ZU67) Coiled-coil domain-containing protein 4| Length = 530 Score = 32.7 bits (73), Expect = 0.83 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 10/123 (8%) Frame = +3 Query: 54 LQTAQKQSYYTSIESS*PKKQERRRTKHIEKGLYSQTQIN----------QQPYSIFTSL 203 L + QS + ++ ER+ HI KG++SQT N +Q S F + Sbjct: 185 LDSNHSQSMISCVKQEGSSYNERQEHCHIGKGVHSQTSDNVDIEMQYMQRKQQTSAFLRV 244 Query: 204 NHT*HLYIFLSSNTLPIKPNPRSKDSTGHRSLFNSSYSTPQQSSACYTGITSMSEVSSHL 383 T L +L S + P PNP S GH + + ++P + +T + SE H Sbjct: 245 -FTDSLQNYLLSGSFP-TPNPSSASEYGHLADVDPLSTSPVHTLGGWTS-PATSESHGHP 301 Query: 384 TTS 392 ++S Sbjct: 302 SSS 304
>COPA_HELPY (P55989) Copper-transporting ATPase (EC 3.6.3.4)| Length = 745 Score = 32.3 bits (72), Expect = 1.1 Identities = 31/123 (25%), Positives = 49/123 (39%) Frame = +1 Query: 103 NRKNRSEGGQNTLKKDYTAKHRLTSSHTPSLLALITPNICTFFSVLILYQSNPTRGQKIR 282 N+ N E + K Y+ K LT + + F++ ++Y S G + Sbjct: 48 NQTNLDEIFKLIEKLGYSPKKALTKEKKEFFSPNVKLALAVIFTLFVVYLS---MGAMLS 104 Query: 283 QAIVPSSTAAIPHHSNHQLAILVSHPCLKYLHISQPVHRGSLGRNKYPTGNQMRWALMEV 462 +++P S AI +HSN A L L +H LGR+ Y G + W Sbjct: 105 PSLLPESLLAIDNHSNFLNACLQLIGALIVMH---------LGRDFYIQGFKALWHRQPN 155 Query: 463 LSS 471 +SS Sbjct: 156 MSS 158
>COPA_HELPJ (Q9ZM69) Copper-transporting ATPase (EC 3.6.3.4)| Length = 745 Score = 30.8 bits (68), Expect = 3.2 Identities = 30/123 (24%), Positives = 46/123 (37%) Frame = +1 Query: 103 NRKNRSEGGQNTLKKDYTAKHRLTSSHTPSLLALITPNICTFFSVLILYQSNPTRGQKIR 282 N N E + K Y+ K L + + F++ ++Y S G + Sbjct: 48 NETNLDEIFKLIEKLGYSPKKTLAEEKKEFFSPNVKLALAVIFTLFVVYLS---MGAMLS 104 Query: 283 QAIVPSSTAAIPHHSNHQLAILVSHPCLKYLHISQPVHRGSLGRNKYPTGNQMRWALMEV 462 +++P S I HHSN A L L +H LGR+ Y G + W Sbjct: 105 PSLLPESLLTINHHSNFLNACLQLIGALIVMH---------LGRDFYIQGFKALWHRQPN 155 Query: 463 LSS 471 +SS Sbjct: 156 MSS 158
>ADA1A_RABIT (O02824) Alpha-1A adrenergic receptor (Alpha 1A-adrenoceptor)| (Alpha 1A-adrenoreceptor) (Alpha-1C adrenergic receptor) Length = 466 Score = 30.8 bits (68), Expect = 3.2 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Frame = -2 Query: 239 RTEKNVQMLGVIKASKDGVWLLVNLCLAV*SFFNVFCPPSLLF---FRL*ALNTCVI*LL 69 R +K + LG++ WL L + + SFF F PP +F F L LN+C+ ++ Sbjct: 266 REKKAAKTLGIVVGCFVLCWLPFFLVMPIGSFFPDFKPPETVFKIVFWLGYLNSCINPII 325 Query: 68 LGC 60 C Sbjct: 326 YPC 328
>ADA1A_MOUSE (P97718) Alpha-1A adrenergic receptor (Alpha 1A-adrenoceptor)| (Alpha 1A-adrenoreceptor) (Alpha-1C adrenergic receptor) Length = 466 Score = 30.8 bits (68), Expect = 3.2 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Frame = -2 Query: 239 RTEKNVQMLGVIKASKDGVWLLVNLCLAV*SFFNVFCPPSLLF---FRL*ALNTCVI*LL 69 R +K + LG++ WL L + + SFF F PP +F F L LN+C+ ++ Sbjct: 266 REKKAAKTLGIVVGCFVLCWLPFFLVMPIGSFFPNFKPPETVFKIVFWLGYLNSCINPII 325 Query: 68 LGC 60 C Sbjct: 326 YPC 328
>R13L1_ARATH (Q9LRR4) Putative disease resistance RPP13-like protein 1| Length = 1054 Score = 30.8 bits (68), Expect = 3.2 Identities = 18/48 (37%), Positives = 24/48 (50%) Frame = +1 Query: 358 PCLKYLHISQPVHRGSLGRNKYPTGNQMRWALMEVLSSTRSHSFEQHP 501 PCLK LHIS V S+GR Y + Q+R + S + F+ P Sbjct: 813 PCLKELHISGMVGLQSIGRKFYFSDQQLRDQDQQPFRSLETLRFDNLP 860
>ADCY7_HUMAN (P51828) Adenylate cyclase type 7 (EC 4.6.1.1) (Adenylate cyclase| type VII) (ATP pyrophosphate-lyase 7) (Adenylyl cyclase 7) Length = 1080 Score = 30.0 bits (66), Expect = 5.4 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Frame = +1 Query: 97 AHNRKNRSEGGQNTLKKDYTAKHRLTSSHTPSLLA--LITPNICTFFSVLILYQSNPTRG 270 A R +EG + + K++LTS H P LL L+ C ++ Q +P+R Sbjct: 3 AKGRYFLNEGEEGPDQDALYEKYQLTSQHGPLLLTLLLVAATACVALIIIAFSQGDPSRH 62 Query: 271 QKI 279 Q I Sbjct: 63 QAI 65
>COPA3_HELPY (O08462) Copper-transporting ATPase (EC 3.6.3.4)| Length = 745 Score = 29.6 bits (65), Expect = 7.0 Identities = 30/123 (24%), Positives = 47/123 (38%) Frame = +1 Query: 103 NRKNRSEGGQNTLKKDYTAKHRLTSSHTPSLLALITPNICTFFSVLILYQSNPTRGQKIR 282 N N E + K Y+ K L + + F++ ++Y S G + Sbjct: 48 NETNLDEIFKLIEKLGYSPKKTLAEEKKEFFSPNVKLALAVIFTLFVVYLS---MGAMLS 104 Query: 283 QAIVPSSTAAIPHHSNHQLAILVSHPCLKYLHISQPVHRGSLGRNKYPTGNQMRWALMEV 462 +++P S AI +HSN A L L +H LGR+ Y G + W Sbjct: 105 PSLLPESLLAINNHSNFLNACLQLIGALIVMH---------LGRDFYIQGFKALWHRQPN 155 Query: 463 LSS 471 +SS Sbjct: 156 MSS 158
>KCNQ1_SQUAC (O73925) Potassium voltage-gated channel subfamily KQT member 1| (Voltage-gated potassium channel subunit Kv7.1) (IKs producing slow voltage-gated potassium channel alpha subunit KvLQT1) (KQT-like 1) Length = 660 Score = 29.6 bits (65), Expect = 7.0 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 3/65 (4%) Frame = +3 Query: 108 KKQERRRTKHIEKGLYSQTQINQQPYSIFTSLNH---T*HLYIFLSSNTLPIKPNPRSKD 278 K Q+++R KH + + + + Q + + NH T +Y+ + P+P++K Sbjct: 347 KVQQKQRQKHFNRQIPAAASLIQTSWRCHAAENHESATWKMYVRQPTKFYVASPSPKTKK 406 Query: 279 STGHR 293 S G R Sbjct: 407 SVGKR 411
>YEY8_YEAST (P40095) Hypothetical 63.7 kDa protein in BEM2-NCB1 intergenic| region Length = 573 Score = 29.3 bits (64), Expect = 9.2 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 7/67 (10%) Frame = +3 Query: 240 NTLPIKPNPRSKDST----GHRSLFNSSYSTPQQSSACYTGITS---MSEVSSHLTTSPS 398 N LP+ + S ST + S NSS S+P SS+ + + S M +SS T +PS Sbjct: 417 NKLPLTASVPSSLSTTTDAANSSFINSSISSPAPSSSSSSSLVSRGPMQSISSSPTPAPS 476 Query: 399 RFAGKKQ 419 + K + Sbjct: 477 SGSSKSK 483
>PAXA_PASAE (Q9RCG8) Exotoxin paxA| Length = 1049 Score = 29.3 bits (64), Expect = 9.2 Identities = 20/73 (27%), Positives = 32/73 (43%) Frame = +1 Query: 34 INPIQQVFKQPKSNHITQVLRAHNRKNRSEGGQNTLKKDYTAKHRLTSSHTPSLLALITP 213 I+ I + KQP H+ L + + G+N + Y A+H+ + SLL+ Sbjct: 413 ISGILEFSKQPMLEHVASKLGTKIEEWERKYGKNYFENGYDARHKAFLEDSLSLLSSFNK 472 Query: 214 NICTFFSVLILYQ 252 T +VLI Q Sbjct: 473 QYETERAVLITQQ 485
>ENAM_MOUSE (O55196) Enamelin precursor| Length = 1274 Score = 29.3 bits (64), Expect = 9.2 Identities = 33/116 (28%), Positives = 43/116 (37%), Gaps = 1/116 (0%) Frame = +3 Query: 33 HKPDSTSLQTAQKQSYYTSIESS*PKKQERRRTKHIEKGLYSQTQINQQPYSIFTSLNHT 212 HK + +LQ YTS P+K + H E + N P SI S + Sbjct: 1014 HKDNVLALQD------YTSSYGLPPRKNQETSPVHTESSYIKYARPNVSPASILPSQRN- 1066 Query: 213 *HLYIFLSSNTLPIK-PNPRSKDSTGHRSLFNSSYSTPQQSSACYTGITSMSEVSS 377 +S N L + PNP N+ YS Q TGI + SE SS Sbjct: 1067 ------ISENKLTAESPNPSPFGDGVPTVRKNTPYSGKNQLE---TGIVAFSEASS 1113
>ADCY7_BOVIN (Q29450) Adenylate cyclase type 7 (EC 4.6.1.1) (Adenylate cyclase| type VII) (ATP pyrophosphate-lyase 7) (Adenylyl cyclase 7) Length = 1078 Score = 29.3 bits (64), Expect = 9.2 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Frame = +1 Query: 97 AHNRKNRSEGGQNTLKKDYTAKHRLTSSHTPSLLALITPNI--CTFFSVLILYQSNPTRG 270 A R +EG + + K+RLTS H P LL L+ I CT V+ +P+R Sbjct: 3 AKGRYFLNEGEEGPDQDALYEKYRLTSQHGPLLLMLLLVAIAACTTLIVITFSYGDPSRH 62 Query: 271 QKI 279 + + Sbjct: 63 RAV 65 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,268,175 Number of Sequences: 219361 Number of extensions: 2010839 Number of successful extensions: 6102 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 5530 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6096 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5310515667 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
