ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15o14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC130600.3| Oryza sativa (japonica cultivar-group) chromosome... 50 0.009
2ref|XM_475270.1| Oryza sativa (japonica cultivar-group), predic... 50 0.009
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.009
4dbj|AK071740.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.009
5dbj|AK059420.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.009
6emb|AL034561.5|HS692C8 Human DNA sequence from clone RP4-692C8 o... 44 0.54
7ref|XM_474175.1| Oryza sativa (japonica cultivar-group), predic... 42 2.2
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 2.2
9emb|AJ440218.1|OSA440218 Oryza sativa a7 gene for plasma membran... 42 2.2
10gb|AC092390.3| Oryza sativa chromosome 3 BAC OSJNBb0013K08 genom... 42 2.2
11gb|AC159232.2| Mus musculus BAC clone RP24-392E16 from chromosom... 42 2.2
12dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
13dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
14emb|AL442117.1|H0421H08 Oryza sativa genomic DNA, chromosome X, ... 42 2.2
15dbj|AK100435.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.2
16dbj|AK073066.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.2
17gb|AC121504.14| Mus musculus chromosome 13, clone RP24-140A15, c... 42 2.2
18emb|AL606685.3|OSJN00090 Oryza sativa genomic DNA, chromosome 4,... 42 2.2
19ref|NM_001033512.1| Canis familiaris FUN14 domain containing 2 (... 40 8.5
20gb|AC136216.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.5
21gb|AC097112.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.5
22gb|AC097111.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.5
23gb|AC136921.8| Mus musculus chromosome 17, clone RP23-210D4, com... 40 8.5
24gb|AC129095.12| Mus musculus strain C57BL/6J clone rp23-360g16 m... 40 8.5
25emb|Z93403.1|HS308O1 Human DNA sequence from clone RP1-308O1 on ... 40 8.5
26gb|AF163863.1| Mustela vison tyrosine aminotransferase gene, com... 40 8.5
27emb|AL731594.5|OSJN00234 Oryza sativa genomic DNA, chromosome 4,... 40 8.5
28emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromosome 4,... 40 8.5
29gb|AC118653.6| Homo sapiens chromosome 17, clone CTD-2319F6, com... 40 8.5
30gb|AC112911.3| Homo sapiens 3 BAC RP11-694D5 (Roswell Park Cance... 40 8.5
31gb|AY118939.1| Drosophila melanogaster LD24778 full insert cDNA 40 8.5
32ref|NM_170033.1| Drosophila melanogaster locomotion defects CG52... 40 8.5
33ref|NM_170032.2| Drosophila melanogaster locomotion defects CG52... 40 8.5
34ref|NM_170031.1| Drosophila melanogaster locomotion defects CG52... 40 8.5
35ref|NM_170030.1| Drosophila melanogaster locomotion defects CG52... 40 8.5
36dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026 40 8.5
37ref|NM_142193.2| Drosophila melanogaster CG6196-RA (CG6196), mRNA 40 8.5
38gb|AC104428.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.5
39gb|AC084364.20| Homo sapiens 12q BAC RP11-626I20 (Roswell Park C... 40 8.5
40gb|AY071721.1| Drosophila melanogaster RH37427 full length cDNA 40 8.5
41gb|AC183287.1| Pan troglodytes chromosome X clone CH251-59K17 ma... 40 8.5
42gb|AY060657.1| Drosophila melanogaster GH08607 full length cDNA 40 8.5
43dbj|AK084509.1| Mus musculus 13 days embryo heart cDNA, RIKEN fu... 40 8.5
44dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
45gb|AC008197.3|AC008197 Drosophila melanogaster, chromosome 3R, r... 40 8.5
46gb|AC007648.6|AC007648 Drosophila melanogaster, chromosome 3R, r... 40 8.5
47gb|AC007769.3|AC007769 Drosophila melanogaster, chromosome 3R, r... 40 8.5
48gb|AC007037.4| Homo sapiens BAC clone RP11-119H15 from 2, comple... 40 8.5
49dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
50gb|AF245455.1|AF245455 Drosophila melanogaster regulator of G-pr... 40 8.5
51gb|AF130745.1|AF130745 Drosophila melanogaster regulator of G-pr... 40 8.5
52gb|AF130744.1|AF130744 Drosophila melanogaster regulator of G-pr... 40 8.5
53gb|AE003739.3| Drosophila melanogaster chromosome 3R, section 77... 40 8.5
54gb|AE003708.3| Drosophila melanogaster chromosome 3R, section 46... 40 8.5
55gb|AC102602.9| Mus musculus chromosome 9, clone RP23-381L11, com... 40 8.5
56gb|AC087901.20| Mus musculus strain C57BL/6J chromosome 17 clone... 40 8.5
57gb|M15981.1|APHOVP1H Foot and mouth disease virus (serotype O) v... 40 8.5
58gb|M15980.1|APHOVP1G Foot and mouth disease virus (serotype O) v... 40 8.5
59gb|M15979.1|APHOVP1F Foot and mouth disease virus (serotype O) v... 40 8.5
60gb|M15975.1|APHOVP1B Foot and mouth disease virus (serotype O) v... 40 8.5
61gb|M15974.1|APHOVP1A Foot and mouth disease virus (serotype O) v... 40 8.5 
>gb|AC130600.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0048I21, complete sequence
          Length = 137650

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                          
Query: 577   gagatatgaagacatggcccttctgaaatccagattcattgcaga 621
             |||||| ||||||||||| |||||||| | ||||||||| |||||
Sbjct: 99572 gagataggaagacatggctcttctgaagttcagattcatagcaga 99528
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>ref|XM_475270.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1095

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 577  gagatatgaagacatggcccttctgaaatccagattcattgcaga 621
            |||||| ||||||||||| |||||||| | ||||||||| |||||
Sbjct: 1086 gagataggaagacatggctcttctgaagttcagattcatagcaga 1042
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                             
Query: 577      gagatatgaagacatggcccttctgaaatccagattcattgcaga 621
                |||||| ||||||||||| |||||||| | ||||||||| |||||
Sbjct: 20972794 gagataggaagacatggctcttctgaagttcagattcatagcaga 20972750



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 432      agctcagcatgccacacttgtggc 455
                |||| |||||||||||||||||||
Sbjct: 29187026 agctaagcatgccacacttgtggc 29187049



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 432      agctcagcatgccacacttgtggc 455
                |||| |||||||||||||||||||
Sbjct: 26366001 agctaagcatgccacacttgtggc 26366024
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>dbj|AK071740.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108J12, full
            insert sequence
          Length = 1741

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 577  gagatatgaagacatggcccttctgaaatccagattcattgcaga 621
            |||||| ||||||||||| |||||||| | ||||||||| |||||
Sbjct: 1422 gagataggaagacatggctcttctgaagttcagattcatagcaga 1378
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>dbj|AK059420.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-D11, full
           insert sequence
          Length = 1235

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                        
Query: 577 gagatatgaagacatggcccttctgaaatccagattcattgcaga 621
           |||||| ||||||||||| |||||||| | ||||||||| |||||
Sbjct: 877 gagataggaagacatggctcttctgaagttcagattcatagcaga 833
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>emb|AL034561.5|HS692C8 Human DNA sequence from clone RP4-692C8 on chromosome 20p11.22-12.2
            Contains GSSs and STSs, complete sequence
          Length = 125698

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 445  acacttgtggctctttcttttctccc 470
            ||||| ||||||||||||||||||||
Sbjct: 6937 acactggtggctctttcttttctccc 6962
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>ref|XM_474175.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2856

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 148  tgcagccagcaacaaaacatg 168
            |||||||||||||||||||||
Sbjct: 1089 tgcagccagcaacaaaacatg 1069
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 432      agctcagcatgccacacttgtggct 456
                |||| ||||||||||||||||||||
Sbjct: 23739305 agctaagcatgccacacttgtggct 23739329



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 432     agctcagcatgccacacttgtggc 455
               |||| |||||||||||||||||||
Sbjct: 3441225 agctaagcatgccacacttgtggc 3441202
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>emb|AJ440218.1|OSA440218 Oryza sativa a7 gene for plasma membrane H+-ATPase
          Length = 5004

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 148  tgcagccagcaacaaaacatg 168
            |||||||||||||||||||||
Sbjct: 2195 tgcagccagcaacaaaacatg 2175
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>gb|AC092390.3| Oryza sativa chromosome 3 BAC OSJNBb0013K08 genomic sequence, complete
             sequence
          Length = 120116

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 432   agctcagcatgccacacttgtggct 456
             |||| ||||||||||||||||||||
Sbjct: 71359 agctaagcatgccacacttgtggct 71383
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>gb|AC159232.2| Mus musculus BAC clone RP24-392E16 from chromosome 13, complete sequence
          Length = 169281

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 119    tgtaacagttctgaaacctccgaacagaa 147
              |||||||||||| |||||||||| |||||
Sbjct: 139967 tgtaacagttctaaaacctccgagcagaa 139995
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 148      tgcagccagcaacaaaacatg 168
                |||||||||||||||||||||
Sbjct: 33495443 tgcagccagcaacaaaacatg 33495423



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 432      agctcagcatgccacacttgtggc 455
                |||| |||||||||||||||||||
Sbjct: 26558577 agctaagcatgccacacttgtggc 26558554



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 435     tcagcatgccacacttgtgg 454
               ||||||||||||||||||||
Sbjct: 4147625 tcagcatgccacacttgtgg 4147644
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 432      agctcagcatgccacacttgtggct 456
                |||| ||||||||||||||||||||
Sbjct: 23732333 agctaagcatgccacacttgtggct 23732357



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 432     agctcagcatgccacacttgtggc 455
               |||| |||||||||||||||||||
Sbjct: 3441336 agctaagcatgccacacttgtggc 3441313
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>emb|AL442117.1|H0421H08 Oryza sativa genomic DNA, chromosome X, BAC clone: H0421H08, complete
            sequence
          Length = 55574

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 148  tgcagccagcaacaaaacatg 168
            |||||||||||||||||||||
Sbjct: 8999 tgcagccagcaacaaaacatg 8979
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>dbj|AK100435.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088J16, full
            insert sequence
          Length = 3560

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 148  tgcagccagcaacaaaacatg 168
            |||||||||||||||||||||
Sbjct: 1395 tgcagccagcaacaaaacatg 1375
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>dbj|AK073066.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023L01, full
           insert sequence
          Length = 2444

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 148 tgcagccagcaacaaaacatg 168
           |||||||||||||||||||||
Sbjct: 324 tgcagccagcaacaaaacatg 304
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>gb|AC121504.14| Mus musculus chromosome 13, clone RP24-140A15, complete sequence
          Length = 156791

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 119    tgtaacagttctgaaacctccgaacagaa 147
              |||||||||||| |||||||||| |||||
Sbjct: 127945 tgtaacagttctaaaacctccgagcagaa 127917
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>emb|AL606685.3|OSJN00090 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0071I13,
             complete sequence
          Length = 152264

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 148   tgcagccagcaacaaaacatg 168
             |||||||||||||||||||||
Sbjct: 71732 tgcagccagcaacaaaacatg 71712
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>ref|NM_001033512.1| Canis familiaris FUN14 domain containing 2 (FUNDC2), mRNA
          Length = 1428

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 349  tgagctgagggtcttgtgtttggt 372
            |||||||||||| |||||||||||
Sbjct: 1206 tgagctgagggtattgtgtttggt 1229
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>gb|AC136216.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0022J22, complete sequence
          Length = 142854

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 432   agctcagcatgccacacttgtggc 455
             |||| |||||||||||||||||||
Sbjct: 70485 agctaagcatgccacacttgtggc 70508
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>gb|AC097112.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1741_B01,
             complete sequence
          Length = 147704

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 432   agctcagcatgccacacttgtggc 455
             |||| |||||||||||||||||||
Sbjct: 10692 agctaagcatgccacacttgtggc 10715
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>gb|AC097111.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1014_C08,
             complete sequence
          Length = 95638

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 432   agctcagcatgccacacttgtggc 455
             |||| |||||||||||||||||||
Sbjct: 63357 agctaagcatgccacacttgtggc 63380
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>gb|AC136921.8| Mus musculus chromosome 17, clone RP23-210D4, complete sequence
          Length = 244237

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 595  ccttctgaaatccagattca 614
            ||||||||||||||||||||
Sbjct: 3113 ccttctgaaatccagattca 3094
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>gb|AC129095.12| Mus musculus strain C57BL/6J clone rp23-360g16 map 17, complete
             sequence
          Length = 209946

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 595   ccttctgaaatccagattca 614
             ||||||||||||||||||||
Sbjct: 64125 ccttctgaaatccagattca 64106
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>emb|Z93403.1|HS308O1 Human DNA sequence from clone RP1-308O1 on chromosome Xp11.3-11.4
             Contains part of a novel gene, complete sequence
          Length = 166715

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 457   ctttcttttctcccttggcc 476
             ||||||||||||||||||||
Sbjct: 83899 ctttcttttctcccttggcc 83918
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>gb|AF163863.1| Mustela vison tyrosine aminotransferase gene, complete cds
          Length = 12379

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 451  gtggctctttcttttctccc 470
            ||||||||||||||||||||
Sbjct: 1432 gtggctctttcttttctccc 1451
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>emb|AL731594.5|OSJN00234 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0032N05,
              complete sequence
          Length = 159486

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 435    tcagcatgccacacttgtgg 454
              ||||||||||||||||||||
Sbjct: 133630 tcagcatgccacacttgtgg 133649
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>emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081C01,
             complete sequence
          Length = 140454

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 432   agctcagcatgccacacttgtggc 455
             |||| |||||||||||||||||||
Sbjct: 95463 agctaagcatgccacacttgtggc 95440
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>gb|AC118653.6| Homo sapiens chromosome 17, clone CTD-2319F6, complete sequence
          Length = 112268

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 449   ttgtggctctttcttttctc 468
             ||||||||||||||||||||
Sbjct: 50144 ttgtggctctttcttttctc 50125
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>gb|AC112911.3| Homo sapiens 3 BAC RP11-694D5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 101467

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 452   tggctctttcttttctccct 471
             ||||||||||||||||||||
Sbjct: 29150 tggctctttcttttctccct 29131
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>gb|AY118939.1| Drosophila melanogaster LD24778 full insert cDNA
          Length = 5224

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 174  caccaccatagtgcagacaa 193
            ||||||||||||||||||||
Sbjct: 3598 caccaccatagtgcagacaa 3617
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>ref|NM_170033.1| Drosophila melanogaster locomotion defects CG5248-RC, transcript
            variant C (loco), mRNA
          Length = 3139

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 174  caccaccatagtgcagacaa 193
            ||||||||||||||||||||
Sbjct: 1434 caccaccatagtgcagacaa 1453
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>ref|NM_170032.2| Drosophila melanogaster locomotion defects CG5248-RB, transcript
            variant B (loco), mRNA
          Length = 4000

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 174  caccaccatagtgcagacaa 193
            ||||||||||||||||||||
Sbjct: 2295 caccaccatagtgcagacaa 2314
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>ref|NM_170031.1| Drosophila melanogaster locomotion defects CG5248-RA, transcript
            variant A (loco), mRNA
          Length = 3601

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 174  caccaccatagtgcagacaa 193
            ||||||||||||||||||||
Sbjct: 1896 caccaccatagtgcagacaa 1915
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>ref|NM_170030.1| Drosophila melanogaster locomotion defects CG5248-RD, transcript
            variant D (loco), mRNA
          Length = 5303

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 174  caccaccatagtgcagacaa 193
            ||||||||||||||||||||
Sbjct: 3598 caccaccatagtgcagacaa 3617
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>dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026
          Length = 2324132

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 353    ctgagggtcttgtgtttggt 372
              ||||||||||||||||||||
Sbjct: 170447 ctgagggtcttgtgtttggt 170466
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>ref|NM_142193.2| Drosophila melanogaster CG6196-RA (CG6196), mRNA
          Length = 613

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 81  acaagaagcaagtggacaac 100
           ||||||||||||||||||||
Sbjct: 311 acaagaagcaagtggacaac 330
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>gb|AC104428.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1123F12,
             complete sequence
          Length = 103330

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 432   agctcagcatgccacacttgtggc 455
             |||| |||||||||||||||||||
Sbjct: 69150 agctaagcatgccacacttgtggc 69173
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>gb|AC084364.20| Homo sapiens 12q BAC RP11-626I20 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 104791

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 594   cccttctgaaatccagattc 613
             ||||||||||||||||||||
Sbjct: 28026 cccttctgaaatccagattc 28045
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>gb|AY071721.1| Drosophila melanogaster RH37427 full length cDNA
          Length = 628

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 81  acaagaagcaagtggacaac 100
           ||||||||||||||||||||
Sbjct: 312 acaagaagcaagtggacaac 331
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>gb|AC183287.1| Pan troglodytes chromosome X clone CH251-59K17 map human ortholog p11.4,
              complete sequence
          Length = 225601

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 457    ctttcttttctcccttggcc 476
              ||||||||||||||||||||
Sbjct: 187121 ctttcttttctcccttggcc 187102
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>gb|AY060657.1| Drosophila melanogaster GH08607 full length cDNA
          Length = 3073

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 174  caccaccatagtgcagacaa 193
            ||||||||||||||||||||
Sbjct: 1433 caccaccatagtgcagacaa 1452
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>dbj|AK084509.1| Mus musculus 13 days embryo heart cDNA, RIKEN full-length enriched
           library, clone:D330010B20 product:unclassifiable, full
           insert sequence
          Length = 3326

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 496 aaaaaagttagcatgattatgact 519
           ||||||||||| ||||||||||||
Sbjct: 251 aaaaaagttaggatgattatgact 274
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 432     agctcagcatgccacacttgtggc 455
               |||| |||||||||||||||||||
Sbjct: 4245117 agctaagcatgccacacttgtggc 4245094
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>gb|AC008197.3|AC008197 Drosophila melanogaster, chromosome 3R, region 94B-94C, BAC clone
             BACR02L12, complete sequence
          Length = 178931

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 174   caccaccatagtgcagacaa 193
             ||||||||||||||||||||
Sbjct: 67162 caccaccatagtgcagacaa 67143
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>gb|AC007648.6|AC007648 Drosophila melanogaster, chromosome 3R, region 88E-88F, BAC clone
              BACR13A02, complete sequence
          Length = 166141

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 81     acaagaagcaagtggacaac 100
              ||||||||||||||||||||
Sbjct: 109698 acaagaagcaagtggacaac 109679
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>gb|AC007769.3|AC007769 Drosophila melanogaster, chromosome 3R, region 88F-88F, BAC clone
            BACR17K19, complete sequence
          Length = 167918

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 81   acaagaagcaagtggacaac 100
            ||||||||||||||||||||
Sbjct: 9792 acaagaagcaagtggacaac 9773
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>gb|AC007037.4| Homo sapiens BAC clone RP11-119H15 from 2, complete sequence
          Length = 168084

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 571   agttgggagatatgaagaca 590
             ||||||||||||||||||||
Sbjct: 35775 agttgggagatatgaagaca 35794
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>dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0554A06
          Length = 165311

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 432   agctcagcatgccacacttgtggc 455
             |||| |||||||||||||||||||
Sbjct: 90338 agctaagcatgccacacttgtggc 90315
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>gb|AF245455.1|AF245455 Drosophila melanogaster regulator of G-protein signalling LOCO III
            mRNA, complete cds
          Length = 3507

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 174  caccaccatagtgcagacaa 193
            ||||||||||||||||||||
Sbjct: 1895 caccaccatagtgcagacaa 1914
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>gb|AF130745.1|AF130745 Drosophila melanogaster regulator of G-protein signalling LOCO C1
            (loco) mRNA, complete cds
          Length = 2912

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 174  caccaccatagtgcagacaa 193
            ||||||||||||||||||||
Sbjct: 1317 caccaccatagtgcagacaa 1336
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>gb|AF130744.1|AF130744 Drosophila melanogaster regulator of G-protein signalling LOCO C2
            (loco) mRNA, complete cds
          Length = 4002

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 174  caccaccatagtgcagacaa 193
            ||||||||||||||||||||
Sbjct: 2297 caccaccatagtgcagacaa 2316
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>gb|AE003739.3| Drosophila melanogaster chromosome 3R, section 77 of 118 of the complete
              sequence
          Length = 224856

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 174    caccaccatagtgcagacaa 193
              ||||||||||||||||||||
Sbjct: 200672 caccaccatagtgcagacaa 200653
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>gb|AE003708.3| Drosophila melanogaster chromosome 3R, section 46 of 118 of the complete
              sequence
          Length = 236375

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 81     acaagaagcaagtggacaac 100
              ||||||||||||||||||||
Sbjct: 154130 acaagaagcaagtggacaac 154111
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>gb|AC102602.9| Mus musculus chromosome 9, clone RP23-381L11, complete sequence
          Length = 253504

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 496    aaaaaagttagcatgattatgact 519
              ||||||||||| ||||||||||||
Sbjct: 106076 aaaaaagttaggatgattatgact 106099
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>gb|AC087901.20| Mus musculus strain C57BL/6J chromosome 17 clone rp23-22l23, complete
              sequence
          Length = 214372

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 595    ccttctgaaatccagattca 614
              ||||||||||||||||||||
Sbjct: 108246 ccttctgaaatccagattca 108227
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>gb|M15981.1|APHOVP1H Foot and mouth disease virus (serotype O) variant VP1 capsid
           protein gene, partial cds
          Length = 333

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 560 ctgaagtctcaagttgggag 579
           ||||||||||||||||||||
Sbjct: 234 ctgaagtctcaagttgggag 215
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>gb|M15980.1|APHOVP1G Foot and mouth disease virus (serotype O) variant VP1 capsid
           protein gene, partial cds
          Length = 375

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 560 ctgaagtctcaagttgggag 579
           ||||||||||||||||||||
Sbjct: 276 ctgaagtctcaagttgggag 257
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>gb|M15979.1|APHOVP1F Foot and mouth disease virus (serotype O) variant VP1 capsid
           protein gene, partial cds
          Length = 375

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 560 ctgaagtctcaagttgggag 579
           ||||||||||||||||||||
Sbjct: 276 ctgaagtctcaagttgggag 257
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>gb|M15975.1|APHOVP1B Foot and mouth disease virus (serotype O) variant VP1 capsid
           protein gene, partial cds
          Length = 372

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 560 ctgaagtctcaagttgggag 579
           ||||||||||||||||||||
Sbjct: 273 ctgaagtctcaagttgggag 254
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>gb|M15974.1|APHOVP1A Foot and mouth disease virus (serotype O) variant VP1 capsid
           protein gene, partial cds
          Length = 375

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 560 ctgaagtctcaagttgggag 579
           ||||||||||||||||||||
Sbjct: 276 ctgaagtctcaagttgggag 257


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,237,390
Number of Sequences: 3902068
Number of extensions: 5237390
Number of successful extensions: 85480
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85034
Number of HSP's gapped (non-prelim): 446
length of query: 624
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 601
effective length of database: 17,143,297,704
effective search space: 10303121920104
effective search space used: 10303121920104
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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