ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags16d13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X15691.1|HVLP60 Barley mRNA for chloroplast low molecular ma... 46 0.14
2emb|AL031658.11|HS310O13 Human DNA sequence from clone RP1-310O1... 44 0.54
3gb|AC122469.4| Mus musculus chromosome 6 clone RP24-318I5, compl... 42 2.2
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 2.2
5gb|AY387483.1| Oryza sativa (japonica cultivar-group) BAC OSJNBa... 42 2.2
6gb|AC107905.5| Homo sapiens chromosome 15, clone CTD-2026J24, co... 42 2.2
7gb|AC023850.10| Homo sapiens chromosome 11, clone RP11-48J22, co... 42 2.2
8gb|AC012404.9| Homo sapiens, clone RP11-39M21, complete sequence 42 2.2
9gb|AC104690.2| Homo sapiens BAC clone RP11-183P23 from 4, comple... 42 2.2
10gb|AC118133.4| Oryza sativa chromosome 3 BAC OSJNBb0016H12 genom... 42 2.2
11dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
12emb|X15692.1|HVLP90 Barley mRNA for chloroplast low molecular ma... 42 2.2
13dbj|AK105812.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.2
14dbj|AK069117.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.2
15dbj|AP002383.3| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 2.2
16gb|AC122240.4| Mus musculus BAC clone RP23-145L9 from 6, complet... 42 2.2
17ref|NM_170768.1| Homo sapiens zinc finger protein 91 homolog (mo... 40 8.5
18ref|NG_003104.1| Homo sapiens zinc finger protein 91 homolog (mo... 40 8.5
19gb|BC072345.1| Xenopus laevis hypothetical protein MGC83475, mRN... 40 8.5
20gb|BC069167.1| Homo sapiens ciliary neurotrophic factor, mRNA (c... 40 8.5
21gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 8.5
22emb|Z73899.1|CEZK829 Caenorhabditis elegans Cosmid ZK829, comple... 40 8.5
23gb|AC127575.4| Mus musculus BAC clone RP24-240L12 from chromosom... 40 8.5
24gb|AC127234.3| Mus musculus BAC clone RP24-566K14 from chromosom... 40 8.5
25emb|CR848708.12| Wallaby DNA sequence from clone MEKBa-201B9, co... 40 8.5
26emb|AL646093.9| Mouse DNA sequence from clone RP23-55I2 on chrom... 40 8.5
27gb|AC131053.2| Homo sapiens chromosome 18, clone RP11-348G23, co... 40 8.5
28gb|AC112778.7| Homo sapiens X BAC RP11-629O4 (Roswell Park Cance... 40 8.5
29gb|AC099848.2| Homo sapiens chromosome 18, clone RP11-856F24, co... 40 8.5
30dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 40 8.5
31gb|BC068030.1| Homo sapiens ciliary neurotrophic factor, mRNA (c... 40 8.5
32gb|AC025679.4|AC025679 Homo sapiens chromosome 18, clone RP11-38... 40 8.5
33dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
34gb|AY443319.1| Pitta sordida recombination activating protein 1 ... 40 8.5
35gb|AC025910.19|AC025910 Mus musculus 11 BAC RP23-40J4 (Roswell P... 40 8.5
36gb|AC016970.16| Homo sapiens 3 BAC RP11-40M23 (Roswell Park Canc... 40 8.5
37dbj|AP005172.4| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
38dbj|AP003797.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
39emb|X55890.1|HSCNTFG2 Human gene for ciliary neurotrophic factor... 40 8.5
40dbj|AP003557.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 8.5
41dbj|AP001350.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 8.5
42gb|AC134907.5| Mus musculus BAC clone RP23-362K17 from 8, comple... 40 8.5
43ref|NM_000614.2| Homo sapiens ciliary neurotrophic factor (CNTF)... 40 8.5
44gb|AY571658.1| Ptychadena mascareniensis recombination activatin... 40 8.5 
>emb|X15691.1|HVLP60 Barley mRNA for chloroplast low molecular mass early
           light-inducible protein (ELIP) (clone HV60)
          Length = 764

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 460 gtgccggtgatgatctcggtggc 482
           |||||||||||||||||||||||
Sbjct: 611 gtgccggtgatgatctcggtggc 589
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>emb|AL031658.11|HS310O13 Human DNA sequence from clone RP1-310O13 on chromosome 20q11.2 Contains
              the 3' end of the C20orf125 gene, the C20orf126 gene, the
              C20orf159 gene, the C20orf160 gene, a novel gene and four
              CpG islands, complete sequence
          Length = 162976

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 171    gaactcccctcccctctcctga 192
              ||||||||||||||||||||||
Sbjct: 138066 gaactcccctcccctctcctga 138045
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>gb|AC122469.4| Mus musculus chromosome 6 clone RP24-318I5, complete sequence
          Length = 181769

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 517    tcctcagagagagtactgatctgca 541
              |||||||||||||| ||||||||||
Sbjct: 129870 tcctcagagagagtcctgatctgca 129846
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 291      tggcttgatgctgatgccttg 311
                |||||||||||||||||||||
Sbjct: 29896116 tggcttgatgctgatgccttg 29896136
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>gb|AY387483.1| Oryza sativa (japonica cultivar-group) BAC OSJNBa0084L17, complete
              sequence
          Length = 159661

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 291    tggcttgatgctgatgccttg 311
              |||||||||||||||||||||
Sbjct: 114490 tggcttgatgctgatgccttg 114470
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>gb|AC107905.5| Homo sapiens chromosome 15, clone CTD-2026J24, complete sequence
          Length = 175627

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 578   tcctgcctttcttttttctct 598
             |||||||||||||||||||||
Sbjct: 27207 tcctgcctttcttttttctct 27227
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>gb|AC023850.10| Homo sapiens chromosome 11, clone RP11-48J22, complete sequence
          Length = 165031

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 170   tgaactcccctcccctctcct 190
             |||||||||||||||||||||
Sbjct: 78694 tgaactcccctcccctctcct 78674
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>gb|AC012404.9| Homo sapiens, clone RP11-39M21, complete sequence
          Length = 198857

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 578  tcctgcctttcttttttctct 598
            |||||||||||||||||||||
Sbjct: 1666 tcctgcctttcttttttctct 1646
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>gb|AC104690.2| Homo sapiens BAC clone RP11-183P23 from 4, complete sequence
          Length = 126700

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 578   tcctgcctttcttttttctct 598
             |||||||||||||||||||||
Sbjct: 51113 tcctgcctttcttttttctct 51093
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>gb|AC118133.4| Oryza sativa chromosome 3 BAC OSJNBb0016H12 genomic sequence, complete
             sequence
          Length = 139946

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 291   tggcttgatgctgatgccttg 311
             |||||||||||||||||||||
Sbjct: 62057 tggcttgatgctgatgccttg 62077
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 291      tggcttgatgctgatgccttg 311
                |||||||||||||||||||||
Sbjct: 29987538 tggcttgatgctgatgccttg 29987558
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>emb|X15692.1|HVLP90 Barley mRNA for chloroplast low molecular mass early
           light-inducible protein (ELIP) (clone HV90)
          Length = 660

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 462 gccggtgatgatctcggtggc 482
           |||||||||||||||||||||
Sbjct: 528 gccggtgatgatctcggtggc 508
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>dbj|AK105812.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-C03, full
            insert sequence
          Length = 1473

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 291  tggcttgatgctgatgccttg 311
            |||||||||||||||||||||
Sbjct: 1258 tggcttgatgctgatgccttg 1238
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>dbj|AK069117.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007E05, full
            insert sequence
          Length = 1461

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 291  tggcttgatgctgatgccttg 311
            |||||||||||||||||||||
Sbjct: 1246 tggcttgatgctgatgccttg 1226
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>dbj|AP002383.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-60C6, complete
             sequence
          Length = 170142

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 530   tactgatctgcaaaatgggta 550
             |||||||||||||||||||||
Sbjct: 71090 tactgatctgcaaaatgggta 71070
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>gb|AC122240.4| Mus musculus BAC clone RP23-145L9 from 6, complete sequence
          Length = 211740

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 517 tcctcagagagagtactgatctgca 541
           |||||||||||||| ||||||||||
Sbjct: 555 tcctcagagagagtcctgatctgca 531
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>ref|NM_170768.1| Homo sapiens zinc finger protein 91 homolog (mouse) (ZFP91),
            transcript variant 2, mRNA
          Length = 3478

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 584  ctttcttttttctctgacca 603
            ||||||||||||||||||||
Sbjct: 2386 ctttcttttttctctgacca 2405
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>ref|NG_003104.1| Homo sapiens zinc finger protein 91 homolog (mouse), ciliary
             neurotrophic factor transcription unit (ZFP91-CNTF) on
             chromosome 11
          Length = 47554

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 584   ctttcttttttctctgacca 603
             ||||||||||||||||||||
Sbjct: 45962 ctttcttttttctctgacca 45981
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>gb|BC072345.1| Xenopus laevis hypothetical protein MGC83475, mRNA (cDNA clone
            MGC:83475 IMAGE:3404163), complete cds
          Length = 2656

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 304  atgccttggaaaggagaggggcct 327
            ||||||||||||||| ||||||||
Sbjct: 1344 atgccttggaaaggataggggcct 1321
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>gb|BC069167.1| Homo sapiens ciliary neurotrophic factor, mRNA (cDNA clone
           MGC:95441 IMAGE:7217016), complete cds
          Length = 1886

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 584 ctttcttttttctctgacca 603
           ||||||||||||||||||||
Sbjct: 798 ctttcttttttctctgacca 817
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 463     ccggtgatgatctcggtggc 482
               ||||||||||||||||||||
Sbjct: 3187528 ccggtgatgatctcggtggc 3187547
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>emb|Z73899.1|CEZK829 Caenorhabditis elegans Cosmid ZK829, complete sequence
          Length = 32538

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 581  tgcctttcttttttctctga 600
            ||||||||||||||||||||
Sbjct: 6702 tgcctttcttttttctctga 6721
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>gb|AC127575.4| Mus musculus BAC clone RP24-240L12 from chromosome 8, complete sequence
          Length = 162564

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 308   cttggaaaggagaggggcct 327
             ||||||||||||||||||||
Sbjct: 28534 cttggaaaggagaggggcct 28553
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>gb|AC127234.3| Mus musculus BAC clone RP24-566K14 from chromosome 18, complete
             sequence
          Length = 181515

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    aagcccaactcatttccttc 70
             ||||||||||||||||||||
Sbjct: 67335 aagcccaactcatttccttc 67354
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>emb|CR848708.12| Wallaby DNA sequence from clone MEKBa-201B9, complete sequence
          Length = 194524

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 302    tgatgccttggaaaggagag 321
              ||||||||||||||||||||
Sbjct: 176547 tgatgccttggaaaggagag 176566
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>emb|AL646093.9| Mouse DNA sequence from clone RP23-55I2 on chromosome 11 Contains the
             Kcnj12 gene for potassium inwardly-rectifying channel
             subfamily J member 12, a ribosomal protein L27a (Rpl27a)
             pseudogene, the Tnfrsf13b gene for tumor necrosis factor
             receptor superfamily member 13b, the Usp22 gene for
             ubiquitin specific protease 22, a ribosomal protein S13
             (Rps13) pseudogene, the Aldh3a1 gene for aldehyde
             dehydrogenase family 3 subfamily A1, the 3' end of one
             variant of the Aldh3a2 gene for aldehyde dehydrogenase
             family 3 subfamily A2 and three CpG islands, complete
             sequence
          Length = 241400

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 579   cctgcctttcttttttctct 598
             ||||||||||||||||||||
Sbjct: 91530 cctgcctttcttttttctct 91549
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>gb|AC131053.2| Homo sapiens chromosome 18, clone RP11-348G23, complete sequence
          Length = 191115

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 581   tgcctttcttttttctctga 600
             ||||||||||||||||||||
Sbjct: 84676 tgcctttcttttttctctga 84657
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>gb|AC112778.7| Homo sapiens X BAC RP11-629O4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 83295

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 508   tatactgggtcctcagagag 527
             ||||||||||||||||||||
Sbjct: 43738 tatactgggtcctcagagag 43719
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>gb|AC099848.2| Homo sapiens chromosome 18, clone RP11-856F24, complete sequence
          Length = 132288

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 581   tgcctttcttttttctctga 600
             ||||||||||||||||||||
Sbjct: 18763 tgcctttcttttttctctga 18744
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>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 460     gtgccggtgatgatctcggt 479
               ||||||||||||||||||||
Sbjct: 2248467 gtgccggtgatgatctcggt 2248486
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>gb|BC068030.1| Homo sapiens ciliary neurotrophic factor, mRNA (cDNA clone
           MGC:75418 IMAGE:30407481), complete cds
          Length = 2002

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 584 ctttcttttttctctgacca 603
           ||||||||||||||||||||
Sbjct: 793 ctttcttttttctctgacca 812
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>gb|AC025679.4|AC025679 Homo sapiens chromosome 18, clone RP11-383C19, complete sequence
          Length = 166937

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 581   tgcctttcttttttctctga 600
             ||||||||||||||||||||
Sbjct: 75403 tgcctttcttttttctctga 75422
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 581      tgcctttcttttttctctga 600
                ||||||||||||||||||||
Sbjct: 10042634 tgcctttcttttttctctga 10042653
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>gb|AY443319.1| Pitta sordida recombination activating protein 1 (RAG1) gene, partial
            cds
          Length = 2872

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 58   actcatttccttcactggcc 77
            ||||||||||||||||||||
Sbjct: 2795 actcatttccttcactggcc 2776
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>gb|AC025910.19|AC025910 Mus musculus 11 BAC RP23-40J4 (Roswell Park Cancer Institute Mouse BAC)
              complete sequence
          Length = 240536

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 579    cctgcctttcttttttctct 598
              ||||||||||||||||||||
Sbjct: 228924 cctgcctttcttttttctct 228905
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>gb|AC016970.16| Homo sapiens 3 BAC RP11-40M23 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 166966

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 533    tgatctgcaaaatgggtact 552
              ||||||||||||||||||||
Sbjct: 162246 tgatctgcaaaatgggtact 162265
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>dbj|AP005172.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0002J01
          Length = 130152

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 581   tgcctttcttttttctctga 600
             ||||||||||||||||||||
Sbjct: 15310 tgcctttcttttttctctga 15329
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>dbj|AP003797.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1001_C01
          Length = 90750

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 581   tgcctttcttttttctctga 600
             ||||||||||||||||||||
Sbjct: 74283 tgcctttcttttttctctga 74302
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>emb|X55890.1|HSCNTFG2 Human gene for ciliary neurotrophic factor, exon 2
          Length = 1278

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 584 ctttcttttttctctgacca 603
           ||||||||||||||||||||
Sbjct: 712 ctttcttttttctctgacca 731
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>dbj|AP003557.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-655C2, complete
              sequences
          Length = 184280

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 584    ctttcttttttctctgacca 603
              ||||||||||||||||||||
Sbjct: 165136 ctttcttttttctctgacca 165155
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>dbj|AP001350.4| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-55A18, complete
             sequences
          Length = 142604

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 584   ctttcttttttctctgacca 603
             ||||||||||||||||||||
Sbjct: 60307 ctttcttttttctctgacca 60326
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>gb|AC134907.5| Mus musculus BAC clone RP23-362K17 from 8, complete sequence
          Length = 186341

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   cttggaaaggagaggggcct 327
             ||||||||||||||||||||
Sbjct: 72083 cttggaaaggagaggggcct 72064
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>ref|NM_000614.2| Homo sapiens ciliary neurotrophic factor (CNTF), mRNA
          Length = 1891

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 584 ctttcttttttctctgacca 603
           ||||||||||||||||||||
Sbjct: 799 ctttcttttttctctgacca 818
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>gb|AY571658.1| Ptychadena mascareniensis recombination activating protein 1 (RAG-1)
            gene, partial cds
          Length = 1491

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 58   actcatttccttcactggcc 77
            ||||||||||||||||||||
Sbjct: 1422 actcatttccttcactggcc 1403


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,902,839
Number of Sequences: 3902068
Number of extensions: 4902839
Number of successful extensions: 107732
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107483
Number of HSP's gapped (non-prelim): 249
length of query: 624
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 601
effective length of database: 17,143,297,704
effective search space: 10303121920104
effective search space used: 10303121920104
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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