ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15o06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
2dbj|AP005406.3| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
3dbj|AK121153.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
4dbj|AP008224.2| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
5emb|AL929064.11| Mouse DNA sequence from clone RP23-442A7 on chr... 48 0.036
6ref|NM_100012.2| Arabidopsis thaliana aspartic-type endopeptidas... 46 0.14
7ref|XM_424534.1| PREDICTED: Gallus gallus vacuolar H-ATPase B su... 46 0.14
8gb|AY128344.1| Arabidopsis thaliana chloroplast nucleoid DNA bin... 46 0.14
9gb|BT006619.1| Arabidopsis thaliana At1g01300 mRNA, complete cds 46 0.14
10emb|BX816357.1|CNS0ABRF Arabidopsis thaliana Full-length cDNA Co... 46 0.14
11emb|BX815795.1|CNS0ACDD Arabidopsis thaliana Full-length cDNA Co... 46 0.14
12emb|BX813801.1|CNS0AC0L Arabidopsis thaliana Full-length cDNA Co... 46 0.14
13emb|BX816933.1|CNS0ABKG Arabidopsis thaliana Full-length cDNA Co... 46 0.14
14emb|BX815326.1|CNS0ABGW Arabidopsis thaliana Full-length cDNA Co... 46 0.14
15emb|BX815554.1|CNS0ABEQ Arabidopsis thaliana Full-length cDNA Co... 46 0.14
16emb|BX822920.1|CNS0A73C Arabidopsis thaliana Full-length cDNA Co... 46 0.14
17gb|AY088528.1| Arabidopsis thaliana clone 7567 mRNA, complete se... 46 0.14
18gb|AC023628.3|AC023628 Arabidopsis thaliana chromosome I BAC F6F... 46 0.14
19gb|U61724.1|GGU61724 Gallus gallus vacuolar H-ATPase B subunit o... 46 0.14
20gb|U20766.1|GGU20766 Gallus gallus vacuolar H+-ATPase B subunit ... 46 0.14
21gb|AC098613.2| Homo sapiens chromosome 3 clone RP11-24F11, compl... 44 0.56
22gb|AC104304.2| Homo sapiens chromosome 3 clone RP11-509I21, comp... 44 0.56
23gb|AC112686.10| Mus musculus chromosome 6, clone RP23-354N21, co... 42 2.2
24gb|AC124498.3| Mus musculus BAC clone RP24-66G5 from chromosome ... 42 2.2
25gb|AC144649.2| Mus musculus BAC clone RP24-347N19 from chromosom... 42 2.2
26gb|AC134989.2| Mus musculus BAC clone RP24-132K10 from chromosom... 42 2.2
27gb|AC134846.3| Mus musculus BAC clone RP24-435N3 from chromosome... 42 2.2
28gb|AC141472.4| Mus musculus BAC clone RP24-335E13 from chromosom... 42 2.2
29gb|AC182488.3| Mus musculus BAC clone RP24-65I16 from chromosome... 42 2.2
30gb|AC173706.4| Mus musculus BAC clone RP24-264J10 from chromosom... 42 2.2
31emb|AL132718.5|CNS01DTG Human chromosome 14 DNA sequence BAC R-6... 42 2.2
32emb|AL110292.4|CNS018P1 Human chromosome 14 DNA sequence BAC R-3... 42 2.2
33gb|AC144812.3| Mus musculus BAC clone RP24-370D12 from Y, comple... 42 2.2
34ref|XM_752350.1| Ustilago maydis 521 hypothetical protein (UM012... 40 8.8
35gb|AC125347.2| Mus musculus BAC clone RP24-136B2 from 5, complet... 40 8.8
36gb|AC112663.9| Mus musculus chromosome 5, clone RP23-465J5, comp... 40 8.8
37gb|AC126792.15| Medicago truncatula clone mth2-8o8, complete seq... 40 8.8
38emb|AJ012216.1|MFA012216 Macaca fascicularis mRNA for DAZ protein 40 8.8
39emb|AL353805.20| Human DNA sequence from clone RP11-190I13 on ch... 40 8.8
40emb|BX511184.11| Zebrafish DNA sequence from clone DKEY-103A3 in... 40 8.8
41emb|BX571695.8| Zebrafish DNA sequence from clone DKEY-49J15 in ... 40 8.8
42emb|BX005185.5| Zebrafish DNA sequence from clone CH211-132N11 i... 40 8.8
43gb|AC140945.1| Gallus gallus BAC clone TAM33-20E22 from chromoso... 40 8.8 
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
             complete sequence
          Length = 28434780

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                             
Query: 340   atagcggtcgtccctgatagaatcatggagtt 371
             |||||| |||||||||||||||||||||||||
Sbjct: 20250 atagcgctcgtccctgatagaatcatggagtt 20281
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>dbj|AP005406.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1147B12
          Length = 127902

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                             
Query: 340   atagcggtcgtccctgatagaatcatggagtt 371
             |||||| |||||||||||||||||||||||||
Sbjct: 20250 atagcgctcgtccctgatagaatcatggagtt 20281
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>dbj|AK121153.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078M01, full
            insert sequence
          Length = 5410

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 340  atagcggtcgtccctgatagaatcatggagtt 371
            |||||| |||||||||||||||||||||||||
Sbjct: 5086 atagcgctcgtccctgatagaatcatggagtt 5055
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>dbj|AP008224.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
             fosmid clone:OSJNOa162K02
          Length = 28981

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                             
Query: 340   atagcggtcgtccctgatagaatcatggagtt 371
             |||||| |||||||||||||||||||||||||
Sbjct: 25597 atagcgctcgtccctgatagaatcatggagtt 25628
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>emb|AL929064.11| Mouse DNA sequence from clone RP23-442A7 on chromosome 2, complete
              sequence
          Length = 121402

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 290    aagagtattcagctcccgtctcca 313
              ||||||||||||||||||||||||
Sbjct: 103968 aagagtattcagctcccgtctcca 103991
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>ref|NM_100012.2| Arabidopsis thaliana aspartic-type endopeptidase/ pepsin A
           AT1G01300 mRNA, complete cds
          Length = 1822

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 295 tattcagctcccgtctccaacgt 317
           |||||||||||||||||||||||
Sbjct: 394 tattcagctcccgtctccaacgt 416
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>ref|XM_424534.1| PREDICTED: Gallus gallus vacuolar H-ATPase B subunit osteoclast
            isozyme (VATB), mRNA
          Length = 3021

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 229  tgatattactcatcctatccctg 251
            |||||||||||||||||||||||
Sbjct: 1029 tgatattactcatcctatccctg 1051
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>gb|AY128344.1| Arabidopsis thaliana chloroplast nucleoid DNA binding protein,
           putative (At1g01300) mRNA, complete cds
          Length = 1690

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 295 tattcagctcccgtctccaacgt 317
           |||||||||||||||||||||||
Sbjct: 289 tattcagctcccgtctccaacgt 311
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>gb|BT006619.1| Arabidopsis thaliana At1g01300 mRNA, complete cds
          Length = 1458

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 295 tattcagctcccgtctccaacgt 317
           |||||||||||||||||||||||
Sbjct: 272 tattcagctcccgtctccaacgt 294
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>emb|BX816357.1|CNS0ABRF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH43ZD11 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1562

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 295 tattcagctcccgtctccaacgt 317
           |||||||||||||||||||||||
Sbjct: 293 tattcagctcccgtctccaacgt 315
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>emb|BX815795.1|CNS0ACDD Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS9ZA03 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1691

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 295 tattcagctcccgtctccaacgt 317
           |||||||||||||||||||||||
Sbjct: 284 tattcagctcccgtctccaacgt 306
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>emb|BX813801.1|CNS0AC0L Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB3ZG04 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1541

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 295 tattcagctcccgtctccaacgt 317
           |||||||||||||||||||||||
Sbjct: 291 tattcagctcccgtctccaacgt 313
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>emb|BX816933.1|CNS0ABKG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH77ZE09 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1655

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 295 tattcagctcccgtctccaacgt 317
           |||||||||||||||||||||||
Sbjct: 290 tattcagctcccgtctccaacgt 312
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>emb|BX815326.1|CNS0ABGW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS52ZB08 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1649

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 295 tattcagctcccgtctccaacgt 317
           |||||||||||||||||||||||
Sbjct: 291 tattcagctcccgtctccaacgt 313
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>emb|BX815554.1|CNS0ABEQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS71ZB03 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1472

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 295 tattcagctcccgtctccaacgt 317
           |||||||||||||||||||||||
Sbjct: 291 tattcagctcccgtctccaacgt 313
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>emb|BX822920.1|CNS0A73C Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB73ZC07 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1583

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 295  tattcagctcccgtctccaacgt 317
            |||||||||||||||||||||||
Sbjct: 1240 tattcagctcccgtctccaacgt 1218
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>gb|AY088528.1| Arabidopsis thaliana clone 7567 mRNA, complete sequence
          Length = 1598

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 295 tattcagctcccgtctccaacgt 317
           |||||||||||||||||||||||
Sbjct: 307 tattcagctcccgtctccaacgt 329
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>gb|AC023628.3|AC023628 Arabidopsis thaliana chromosome I BAC F6F3 genomic sequence, complete
             sequence
          Length = 104001

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 295   tattcagctcccgtctccaacgt 317
             |||||||||||||||||||||||
Sbjct: 58244 tattcagctcccgtctccaacgt 58266
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>gb|U61724.1|GGU61724 Gallus gallus vacuolar H-ATPase B subunit osteoclast isozyme (VATB)
            mRNA, partial cds
          Length = 3035

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 229  tgatattactcatcctatccctg 251
            |||||||||||||||||||||||
Sbjct: 1029 tgatattactcatcctatccctg 1051
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>gb|U20766.1|GGU20766 Gallus gallus vacuolar H+-ATPase B subunit gene, complete cds
          Length = 1645

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 229  tgatattactcatcctatccctg 251
            |||||||||||||||||||||||
Sbjct: 1068 tgatattactcatcctatccctg 1090
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>gb|AC098613.2| Homo sapiens chromosome 3 clone RP11-24F11, complete sequence
          Length = 185437

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 412    gccaaggctgcccaaccatgagaaac 437
              |||||||||||||| |||||||||||
Sbjct: 154043 gccaaggctgcccacccatgagaaac 154018
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>gb|AC104304.2| Homo sapiens chromosome 3 clone RP11-509I21, complete sequence
          Length = 202933

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 412   gccaaggctgcccaaccatgagaaac 437
             |||||||||||||| |||||||||||
Sbjct: 29844 gccaaggctgcccacccatgagaaac 29819
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>gb|AC112686.10| Mus musculus chromosome 6, clone RP23-354N21, complete sequence
          Length = 222603

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 265    agctgctacaaaaaagccctcagaa 289
              ||||||||||||| |||||||||||
Sbjct: 134921 agctgctacaaaacagccctcagaa 134945
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>gb|AC124498.3| Mus musculus BAC clone RP24-66G5 from chromosome Y, complete sequence
          Length = 172801

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 532  catggcgacaggaatgcacacatct 556
            |||||||||||| ||||||||||||
Sbjct: 5641 catggcgacaggcatgcacacatct 5617
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>gb|AC144649.2| Mus musculus BAC clone RP24-347N19 from chromosome Y, complete sequence
          Length = 150192

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 532    catggcgacaggaatgcacacatct 556
              |||||||||||| ||||||||||||
Sbjct: 134074 catggcgacaggcatgcacacatct 134098
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>gb|AC134989.2| Mus musculus BAC clone RP24-132K10 from chromosome Y, complete sequence
          Length = 185435

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 532   catggcgacaggaatgcacacatct 556
             |||||||||||| ||||||||||||
Sbjct: 86152 catggcgacaggcatgcacacatct 86176
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>gb|AC134846.3| Mus musculus BAC clone RP24-435N3 from chromosome Y, complete sequence
          Length = 153742

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 532    catggcgacaggaatgcacacatct 556
              |||||||||||| ||||||||||||
Sbjct: 113083 catggcgacaggcatgcacacatct 113107
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>gb|AC141472.4| Mus musculus BAC clone RP24-335E13 from chromosome Y, complete sequence
          Length = 185021

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 532    catggcgacaggaatgcacacatct 556
              |||||||||||| ||||||||||||
Sbjct: 165142 catggcgacaggcatgcacacatct 165118
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>gb|AC182488.3| Mus musculus BAC clone RP24-65I16 from chromosome y, complete sequence
          Length = 219054

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 532   catggcgacaggaatgcacacatct 556
             |||||||||||| ||||||||||||
Sbjct: 79660 catggcgacaggcatgcacacatct 79684
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>gb|AC173706.4| Mus musculus BAC clone RP24-264J10 from chromosome y, complete sequence
          Length = 160788

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 532   catggcgacaggaatgcacacatct 556
             |||||||||||| ||||||||||||
Sbjct: 52027 catggcgacaggcatgcacacatct 52051
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>emb|AL132718.5|CNS01DTG Human chromosome 14 DNA sequence BAC R-626P14 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 183009

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 162    tctcatttgcatccatcctat 182
              |||||||||||||||||||||
Sbjct: 131317 tctcatttgcatccatcctat 131297
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>emb|AL110292.4|CNS018P1 Human chromosome 14 DNA sequence BAC R-384J4 of library RPCI-11 from
            chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 177427

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 162  tctcatttgcatccatcctat 182
            |||||||||||||||||||||
Sbjct: 3325 tctcatttgcatccatcctat 3305
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>gb|AC144812.3| Mus musculus BAC clone RP24-370D12 from Y, complete sequence
          Length = 150661

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 532   catggcgacaggaatgcacacatct 556
             |||||||||||| ||||||||||||
Sbjct: 14254 catggcgacaggcatgcacacatct 14230
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>ref|XM_752350.1| Ustilago maydis 521 hypothetical protein (UM01296.1) partial mRNA
          Length = 2637

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 315  cgtcttccaacgtccgccca 334
            ||||||||||||||||||||
Sbjct: 1457 cgtcttccaacgtccgccca 1476
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>gb|AC125347.2| Mus musculus BAC clone RP24-136B2 from 5, complete sequence
          Length = 130354

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 61    gtttacatgttcacaaatgc 80
             ||||||||||||||||||||
Sbjct: 94114 gtttacatgttcacaaatgc 94095
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>gb|AC112663.9| Mus musculus chromosome 5, clone RP23-465J5, complete sequence
          Length = 228717

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 61    gtttacatgttcacaaatgc 80
             ||||||||||||||||||||
Sbjct: 24677 gtttacatgttcacaaatgc 24658
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>gb|AC126792.15| Medicago truncatula clone mth2-8o8, complete sequence
          Length = 105297

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    atcttgtcaagtttacatgt 70
             ||||||||||||||||||||
Sbjct: 84368 atcttgtcaagtttacatgt 84349
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>emb|AJ012216.1|MFA012216 Macaca fascicularis mRNA for DAZ protein
          Length = 4490

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 161 atctcatttgcatccatcctatca 184
           |||||| |||||||||||||||||
Sbjct: 855 atctcagttgcatccatcctatca 832



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 161 atctcatttgcatccatcctatca 184
           |||||| |||||||||||||||||
Sbjct: 180 atctcagttgcatccatcctatca 157
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>emb|AL353805.20| Human DNA sequence from clone RP11-190I13 on chromosome 9 Contains
            the 5' end of a novel gene (FLJ20287), a novel gene
            similar to RIKEN cDNA 5730528L13 gene (MGC17337), the 5'
            end of the TMEFF1 gene for transmembrane protein with
            EGF-like and two follistatin-like domains 1 (H7365,
            C9ORF2) and four CpG islands, complete sequence
          Length = 158606

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 588  cagaacaatcttcatttgcc 607
            ||||||||||||||||||||
Sbjct: 2448 cagaacaatcttcatttgcc 2429
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>emb|BX511184.11| Zebrafish DNA sequence from clone DKEY-103A3 in linkage group 24,
             complete sequence
          Length = 209735

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 354   tgatagaatcatggagttgc 373
             ||||||||||||||||||||
Sbjct: 96254 tgatagaatcatggagttgc 96235
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>emb|BX571695.8| Zebrafish DNA sequence from clone DKEY-49J15 in linkage group 3,
             complete sequence
          Length = 117582

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   ggaaccatctcatttgcatc 174
             ||||||||||||||||||||
Sbjct: 76167 ggaaccatctcatttgcatc 76148
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>emb|BX005185.5| Zebrafish DNA sequence from clone CH211-132N11 in linkage group 24,
              complete sequence
          Length = 164521

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 354    tgatagaatcatggagttgc 373
              ||||||||||||||||||||
Sbjct: 124026 tgatagaatcatggagttgc 124007
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>gb|AC140945.1| Gallus gallus BAC clone TAM33-20E22 from chromosome ul, complete
             sequence
          Length = 143278

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 566   caccacattgctctgagctc 585
             ||||||||||||||||||||
Sbjct: 21049 caccacattgctctgagctc 21068


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,106,384
Number of Sequences: 3902068
Number of extensions: 5106384
Number of successful extensions: 81120
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81029
Number of HSP's gapped (non-prelim): 91
length of query: 645
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 622
effective length of database: 17,143,297,704
effective search space: 10663131171888
effective search space used: 10663131171888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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