ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15o01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP003570.3| Oryza sativa (japonica cultivar-group) genomic D... 107 4e-20
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 107 4e-20
3dbj|AP004331.3| Oryza sativa (japonica cultivar-group) genomic D... 107 4e-20
4dbj|AK104661.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 4e-20
5dbj|AK069730.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 4e-20
6dbj|AK061117.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 4e-20
7gb|AC102287.16| Mus musculus chromosome 8, clone RP24-345M16, co... 42 2.2
8emb|AJ224683.1|NPAJ4683 Narcissus pseudonarcissus mRNA for zeta-... 42 2.2
9ref|XM_640037.1| Dictyostelium discoideum hypothetical protein (... 40 8.6
10gb|AC166817.3| Mus musculus BAC clone RP24-530C16 from chromosom... 40 8.6
11ref|XM_414691.1| PREDICTED: Gallus gallus similar to SET-binding... 40 8.6
12gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 8.6
13gb|AC140240.2| Mus musculus BAC clone RP24-281M12 from chromosom... 40 8.6
14gb|AC115680.3| Dictyostelium discoideum chromosome 2 map 4915084... 40 8.6
15ref|XM_993394.1| PREDICTED: Mus musculus hypothetical protein LO... 40 8.6
16gb|AC135963.3| Mus musculus BAC clone RP23-346N11 from chromosom... 40 8.6
17gb|AC092729.3| Canis familiaris clone RP81-60B6, complete sequence 40 8.6
18gb|AC137837.3| Medicago truncatula clone mth2-30e7, complete seq... 40 8.6
19gb|AC153460.22| Medicago truncatula clone mth2-76i7, complete se... 40 8.6
20gb|AC093810.4| Homo sapiens BAC clone RP11-354O24 from 4, comple... 40 8.6
21gb|AC093675.4| Homo sapiens BAC clone RP11-592G13 from 2, comple... 40 8.6
22gb|AC017002.4| Homo sapiens BAC clone RP11-68E19 from 2, complet... 40 8.6
23gb|AC034099.16| Mus Musculus Strain C57BL6/J Chromosome 7 BAC, R... 40 8.6
24emb|X95964.1|ATCER1L A.thaliana CER1-like gene (4200bp) 40 8.6
25gb|AY104696.1| Zea mays PCO105438 mRNA sequence 40 8.6
26emb|CT485797.2| Medicago truncatula chromosome 5 clone mth4-11a3... 40 8.6
27gb|AC131120.4| Mus musculus BAC clone RP24-547N4 from 10, comple... 40 8.6
28emb|AL731864.25| Mouse DNA sequence from clone RP23-342F20 on ch... 40 8.6 
>dbj|AP003570.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0432B10
          Length = 131918

 Score =  107 bits (54), Expect = 4e-20
 Identities = 108/126 (85%)
 Strand = Plus / Plus

                                                                          
Query: 271    aagaagcaagttggttctgactcaagaaagagaacatccctttgtacttggcagccacaa 330
              ||||||| || ||||| |||||| | |  ||||||||||| |||||||| ||||||||||
Sbjct: 130607 aagaagctagctggttgtgactccatagtgagaacatccccttgtactttgcagccacaa 130666

                                                                          
Query: 331    attggcgtgatagcatgcttatcggcggctccttgcagcagctggagctgcgtttgatcg 390
              | |||||||| || | ||| |  ||| |||||||||||||||||||||||||||||||||
Sbjct: 130667 actggcgtgacagaaagctcaaaggctgctccttgcagcagctggagctgcgtttgatcg 130726

                    
Query: 391    gttcca 396
              | ||||
Sbjct: 130727 gctcca 130732
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  107 bits (54), Expect = 4e-20
 Identities = 108/126 (85%)
 Strand = Plus / Plus

                                                                            
Query: 271      aagaagcaagttggttctgactcaagaaagagaacatccctttgtacttggcagccacaa 330
                ||||||| || ||||| |||||| | |  ||||||||||| |||||||| ||||||||||
Sbjct: 34633313 aagaagctagctggttgtgactccatagtgagaacatccccttgtactttgcagccacaa 34633372

                                                                            
Query: 331      attggcgtgatagcatgcttatcggcggctccttgcagcagctggagctgcgtttgatcg 390
                | |||||||| || | ||| |  ||| |||||||||||||||||||||||||||||||||
Sbjct: 34633373 actggcgtgacagaaagctcaaaggctgctccttgcagcagctggagctgcgtttgatcg 34633432

                      
Query: 391      gttcca 396
                | ||||
Sbjct: 34633433 gctcca 34633438
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>dbj|AP004331.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0085D07
          Length = 172483

 Score =  107 bits (54), Expect = 4e-20
 Identities = 108/126 (85%)
 Strand = Plus / Plus

                                                                         
Query: 271   aagaagcaagttggttctgactcaagaaagagaacatccctttgtacttggcagccacaa 330
             ||||||| || ||||| |||||| | |  ||||||||||| |||||||| ||||||||||
Sbjct: 85330 aagaagctagctggttgtgactccatagtgagaacatccccttgtactttgcagccacaa 85389

                                                                         
Query: 331   attggcgtgatagcatgcttatcggcggctccttgcagcagctggagctgcgtttgatcg 390
             | |||||||| || | ||| |  ||| |||||||||||||||||||||||||||||||||
Sbjct: 85390 actggcgtgacagaaagctcaaaggctgctccttgcagcagctggagctgcgtttgatcg 85449

                   
Query: 391   gttcca 396
             | ||||
Sbjct: 85450 gctcca 85455
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>dbj|AK104661.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-E03, full
           insert sequence
          Length = 1158

 Score =  107 bits (54), Expect = 4e-20
 Identities = 108/126 (85%)
 Strand = Plus / Minus

                                                                       
Query: 271 aagaagcaagttggttctgactcaagaaagagaacatccctttgtacttggcagccacaa 330
           ||||||| || ||||| |||||| | |  ||||||||||| |||||||| ||||||||||
Sbjct: 935 aagaagctagctggttgtgactccatagtgagaacatccccttgtactttgcagccacaa 876

                                                                       
Query: 331 attggcgtgatagcatgcttatcggcggctccttgcagcagctggagctgcgtttgatcg 390
           | |||||||| || | ||| |  ||| |||||||||||||||||||||||||||||||||
Sbjct: 875 actggcgtgacagaaagctcaaaggctgctccttgcagcagctggagctgcgtttgatcg 816

                 
Query: 391 gttcca 396
           | ||||
Sbjct: 815 gctcca 810
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>dbj|AK069730.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026G14, full
            insert sequence
          Length = 2162

 Score =  107 bits (54), Expect = 4e-20
 Identities = 108/126 (85%)
 Strand = Plus / Minus

                                                                        
Query: 271  aagaagcaagttggttctgactcaagaaagagaacatccctttgtacttggcagccacaa 330
            ||||||| || ||||| |||||| | |  ||||||||||| |||||||| ||||||||||
Sbjct: 1894 aagaagctagctggttgtgactccatagtgagaacatccccttgtactttgcagccacaa 1835

                                                                        
Query: 331  attggcgtgatagcatgcttatcggcggctccttgcagcagctggagctgcgtttgatcg 390
            | |||||||| || | ||| |  ||| |||||||||||||||||||||||||||||||||
Sbjct: 1834 actggcgtgacagaaagctcaaaggctgctccttgcagcagctggagctgcgtttgatcg 1775

                  
Query: 391  gttcca 396
            | ||||
Sbjct: 1774 gctcca 1769
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>dbj|AK061117.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-F03, full
           insert sequence
          Length = 1180

 Score =  107 bits (54), Expect = 4e-20
 Identities = 108/126 (85%)
 Strand = Plus / Minus

                                                                       
Query: 271 aagaagcaagttggttctgactcaagaaagagaacatccctttgtacttggcagccacaa 330
           ||||||| || ||||| |||||| | |  ||||||||||| |||||||| ||||||||||
Sbjct: 912 aagaagctagctggttgtgactccatagtgagaacatccccttgtactttgcagccacaa 853

                                                                       
Query: 331 attggcgtgatagcatgcttatcggcggctccttgcagcagctggagctgcgtttgatcg 390
           | |||||||| || | ||| |  ||| |||||||||||||||||||||||||||||||||
Sbjct: 852 actggcgtgacagaaagctcaaaggctgctccttgcagcagctggagctgcgtttgatcg 793

                 
Query: 391 gttcca 396
           | ||||
Sbjct: 792 gctcca 787
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>gb|AC102287.16| Mus musculus chromosome 8, clone RP24-345M16, complete sequence
          Length = 179888

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 131   aaccaaagaattttcaaaaccatgt 155
             ||||||||||||||||||| |||||
Sbjct: 59870 aaccaaagaattttcaaaaacatgt 59894
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>emb|AJ224683.1|NPAJ4683 Narcissus pseudonarcissus mRNA for zeta-carotene desaturase
          Length = 2133

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 477 gggggcatggcttcttccact 497
           |||||||||||||||||||||
Sbjct: 8   gggggcatggcttcttccact 28
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>ref|XM_640037.1| Dictyostelium discoideum hypothetical protein (DDB0217043), partial
            mRNA
          Length = 3241

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 130  caaccaaagaattttcaaaa 149
            ||||||||||||||||||||
Sbjct: 1054 caaccaaagaattttcaaaa 1073
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>gb|AC166817.3| Mus musculus BAC clone RP24-530C16 from chromosome 10, complete
             sequence
          Length = 155876

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 362   cttgcagcagctggagctgc 381
             ||||||||||||||||||||
Sbjct: 31710 cttgcagcagctggagctgc 31691
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>ref|XM_414691.1| PREDICTED: Gallus gallus similar to SET-binding protein (SEB)
            (LOC416377), mRNA
          Length = 4047

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 310  ctttgtacttggcagccaca 329
            ||||||||||||||||||||
Sbjct: 3335 ctttgtacttggcagccaca 3354
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 593     atgttgaggatcactagcat 612
               ||||||||||||||||||||
Sbjct: 4768197 atgttgaggatcactagcat 4768178
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>gb|AC140240.2| Mus musculus BAC clone RP24-281M12 from chromosome 18, complete
             sequence
          Length = 166476

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 129   tcaaccaaagaattttcaaaacca 152
             |||||||||||||||| |||||||
Sbjct: 99375 tcaaccaaagaatttttaaaacca 99352
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>gb|AC115680.3| Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4,
             complete sequence
          Length = 90373

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 130   caaccaaagaattttcaaaa 149
             ||||||||||||||||||||
Sbjct: 88662 caaccaaagaattttcaaaa 88681
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>ref|XM_993394.1| PREDICTED: Mus musculus hypothetical protein LOC672428 (LOC672428),
           mRNA
          Length = 666

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 362 cttgcagcagctggagctgc 381
           ||||||||||||||||||||
Sbjct: 180 cttgcagcagctggagctgc 161
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>gb|AC135963.3| Mus musculus BAC clone RP23-346N11 from chromosome 7, complete
            sequence
          Length = 202404

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 362  cttgcagcagctggagctgc 381
            ||||||||||||||||||||
Sbjct: 1901 cttgcagcagctggagctgc 1882
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>gb|AC092729.3| Canis familiaris clone RP81-60B6, complete sequence
          Length = 165116

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 170   ccaaaagtccacagatcaaa 189
             ||||||||||||||||||||
Sbjct: 75165 ccaaaagtccacagatcaaa 75146
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>gb|AC137837.3| Medicago truncatula clone mth2-30e7, complete sequence
          Length = 79015

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 564   ctgctagtgatgatgccata 583
             ||||||||||||||||||||
Sbjct: 25226 ctgctagtgatgatgccata 25245
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>gb|AC153460.22| Medicago truncatula clone mth2-76i7, complete sequence
          Length = 127094

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 564   ctgctagtgatgatgccata 583
             ||||||||||||||||||||
Sbjct: 93849 ctgctagtgatgatgccata 93830
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>gb|AC093810.4| Homo sapiens BAC clone RP11-354O24 from 4, complete sequence
          Length = 146671

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 86    ataatgagcaaagatacttgacaa 109
             ||||||||||||||||||| ||||
Sbjct: 94968 ataatgagcaaagatactttacaa 94945
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>gb|AC093675.4| Homo sapiens BAC clone RP11-592G13 from 2, complete sequence
          Length = 123182

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 537   tattcaggaacactagtgtc 556
             ||||||||||||||||||||
Sbjct: 14407 tattcaggaacactagtgtc 14388
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>gb|AC017002.4| Homo sapiens BAC clone RP11-68E19 from 2, complete sequence
          Length = 205662

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 170    ccaaaagtccacagatcaaa 189
              ||||||||||||||||||||
Sbjct: 125146 ccaaaagtccacagatcaaa 125127
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>gb|AC034099.16| Mus Musculus Strain C57BL6/J Chromosome 7 BAC, RP23-145I16, complete
              sequence
          Length = 229553

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 362    cttgcagcagctggagctgc 381
              ||||||||||||||||||||
Sbjct: 155831 cttgcagcagctggagctgc 155812
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>emb|X95964.1|ATCER1L A.thaliana CER1-like gene (4200bp)
          Length = 4200

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 282 tggttctgactcaagaaagagaac 305
           ||||||||||| ||||||||||||
Sbjct: 410 tggttctgactaaagaaagagaac 433
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>gb|AY104696.1| Zea mays PCO105438 mRNA sequence
          Length = 1009

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                           
Query: 269 tcaagaagcaagttggttctgactcaagaaagagaacatccctttgta 316
           ||||||||| || ||||| || ||| |||| ||||||||||| |||||
Sbjct: 735 tcaagaagccagctggttttggctccagaaggagaacatccccttgta 688
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>emb|CT485797.2| Medicago truncatula chromosome 5 clone mth4-11a3, COMPLETE SEQUENCE
          Length = 211224

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 184    atcaaaacaccgtccaacatgaag 207
              |||||||||||||||| |||||||
Sbjct: 142508 atcaaaacaccgtccagcatgaag 142485
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>gb|AC131120.4| Mus musculus BAC clone RP24-547N4 from 10, complete sequence
          Length = 228657

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 362    cttgcagcagctggagctgc 381
              ||||||||||||||||||||
Sbjct: 164085 cttgcagcagctggagctgc 164066
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>emb|AL731864.25| Mouse DNA sequence from clone RP23-342F20 on chromosome 7, complete
             sequence
          Length = 148047

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 362   cttgcagcagctggagctgc 381
             ||||||||||||||||||||
Sbjct: 75469 cttgcagcagctggagctgc 75488


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,993,231
Number of Sequences: 3902068
Number of extensions: 4993231
Number of successful extensions: 108568
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108297
Number of HSP's gapped (non-prelim): 271
length of query: 628
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 605
effective length of database: 17,143,297,704
effective search space: 10371695110920
effective search space used: 10371695110920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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