ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15n22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_196815.1| Oryza sativa (japonica cultivar-group) putative... 317 2e-83
2dbj|AK099701.1| Oryza sativa (japonica cultivar-group) cDNA clon... 309 6e-81
3gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome... 107 4e-20
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 107 4e-20
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 107 4e-20
6gb|AY111464.1| Zea mays CL9462_1 mRNA sequence 78 4e-11
7ref|NM_128565.2| Arabidopsis thaliana unknown protein AT2G30100 ... 42 2.2
8ref|XM_417499.1| PREDICTED: Gallus gallus similar to Cas/HEF-lik... 42 2.2
9gb|AC004165.3| Arabidopsis thaliana chromosome 2 clone T27E13 ma... 42 2.2
10gb|AF325196.1|AF325196 Triticum aestivum PST19 (Pst19), LRR19 (L... 42 2.2
11emb|BX819490.1|CNS0A8ZR Arabidopsis thaliana Full-length cDNA Co... 42 2.2
12emb|BX821459.1|CNS0A8CR Arabidopsis thaliana Full-length cDNA Co... 42 2.2
13gb|AC099627.10| Mus musculus chromosome 7, clone RP24-69E5, comp... 42 2.2
14ref|XM_520033.1| PREDICTED: Pan troglodytes hypothetical protein... 40 8.6
15gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, comp... 40 8.6
16gb|AY756173.1| Homo sapiens ficolin (collagen/fibrinogen domain ... 40 8.6
17gb|AC132461.3| Mus musculus chromosome 5 clone RP23-33C9, comple... 40 8.6
18gb|DQ160294.1| Feline coronavirus strain FCoV/NTU2/R/2003 spike ... 40 8.6
19gb|BC038534.1| Homo sapiens chromosome 8 open reading frame 74, ... 40 8.6
20gb|BC065837.1| Homo sapiens chromosome 8 open reading frame 74, ... 40 8.6
21emb|AL663123.1| Human DNA sequence from clone RP11-4K3 on chromo... 40 8.6
22ref|NM_001040032.1| Homo sapiens chromosome 8 open reading frame... 40 8.6
23gb|AC104390.6| Homo sapiens chromosome 15, clone CTD-2643K12, co... 40 8.6
24gb|AC161576.7| Mus musculus chromosome 8, clone RP24-315L4, comp... 40 8.6
25emb|BX247953.2| Mouse DNA sequence from clone RP23-289L21 on chr... 40 8.6
26dbj|AK131443.1| Homo sapiens cDNA FLJ16578 fis, clone TESTI2035981 40 8.6
27emb|CR604997.1| full-length cDNA clone CS0DJ003YB07 of T cells (... 40 8.6
28gb|AC105001.3| Homo sapiens chromosome 8, clone CTD-2135J3, comp... 40 8.6
29dbj|AB168433.1| Macaca fascicularis testis cDNA clone: QtsA-1212... 40 8.6
30emb|CR626858.1| Rice Cluster I (RC-I), uncultured archeon clone ... 40 8.6
31gb|U15802.1|PTU15802 Paramecium tetraurelia cell cycle control C... 40 8.6
32dbj|AB088223.1| Feline infectious peritonitis virus S gene for p... 40 8.6
33dbj|AB088222.1| Feline infectious peritonitis virus S gene for p... 40 8.6 
>ref|NM_196815.1| Oryza sativa (japonica cultivar-group) putative leucine-rich repeat
            protein (OSJNBa0018F16.2), mRNA
          Length = 1432

 Score =  317 bits (160), Expect = 2e-83
 Identities = 385/460 (83%)
 Strand = Plus / Minus

                                                                        
Query: 172  tcatccgcaccctcgtcgaaaacacctgatgatcctacacgaaaatccagctgcttttga 231
            ||||||||||| || ||||| ||| |||||||||| || || ||||| ||||||||||||
Sbjct: 1118 tcatccgcaccttcatcgaacacaactgatgatcccacccggaaatcgagctgcttttga 1059

                                                                        
Query: 232  tacttctgccgcctacgttcgtcaaactcctcccagccctccatctgtcgaagaatgtcg 291
            | ||||| ||  | ||||||||||||||||||||| || |||| ||| ||||||| ||||
Sbjct: 1058 tgcttcttccttcgacgttcgtcaaactcctcccaaccgtccacctgccgaagaacgtcg 999

                                                                        
Query: 292  tttgtgattccagtgccatggagatcaagtgtagtaagccgccagcacttcttgaataaa 351
            ||||||||| ||||||||||||||||||||||| | ||| || |||| ||  |||| |||
Sbjct: 998  tttgtgatttcagtgccatggagatcaagtgtaatgagctgcgagcattttatgaagaaa 939

                                                                        
Query: 352  ctcggcggtagggaattaagaccattgttccttagatgcagagtcttaagattgtgaagg 411
               |  ||||||||  ||||||||||||||| || |  || || ||| ||||  ||||||
Sbjct: 938  gctgaaggtagggatgtaagaccattgttccgtacactcaaagccttgagatgttgaagg 879

                                                                        
Query: 412  tttccacaagcctttggtagctcggctaaaagatttgatgataagtcaacctcaaagaga 471
            |||||| |||||| ||| || || || |||||||||||||| || |||||||||  ||||
Sbjct: 878  tttccaaaagcctctggcagttcagccaaaagatttgatgacaaatcaacctcattgaga 819

                                                                        
Query: 472  gattcacaatcgcctatagaggaaggcagcgaagttatcctattattatttgctataaga 531
            ||||||||| | |||||||| |||||||  |||||||||||||||||||||||||| |||
Sbjct: 818  gattcacaaccacctatagatgaaggcaatgaagttatcctattattatttgctatcaga 759

                                                                        
Query: 532  atctctagctgcttcagcaaacctatttcaacaggtaggctaccaagcatgttatttgca 591
            ||||| || |||||||| || |||||||||||||||| | |  ||||| |||||||||||
Sbjct: 758  atctcaagatgcttcagtaaccctatttcaacaggtaagttctcaagcctgttatttgca 699

                                                    
Query: 592  atgcgaagttcacgtagaaaagtcaatgtgcccaaacttg 631
            || ||||||||||||| |  ||| | || |||||||||||
Sbjct: 698  atacgaagttcacgtaaatgagttattgagcccaaacttg 659
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>dbj|AK099701.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075D06, full
            insert sequence
          Length = 3368

 Score =  309 bits (156), Expect = 6e-81
 Identities = 384/460 (83%)
 Strand = Plus / Minus

                                                                        
Query: 172  tcatccgcaccctcgtcgaaaacacctgatgatcctacacgaaaatccagctgcttttga 231
            ||||||||||| || ||||| ||| |||||||||| || || ||||| ||||||||||||
Sbjct: 3045 tcatccgcaccttcatcgaacacaactgatgatcccacccggaaatcgagctgcttttga 2986

                                                                        
Query: 232  tacttctgccgcctacgttcgtcaaactcctcccagccctccatctgtcgaagaatgtcg 291
            | ||||| ||  | |||| |||||||||||||||| || |||| ||| ||||||| ||||
Sbjct: 2985 tgcttcttccttcgacgtccgtcaaactcctcccaaccgtccacctgccgaagaacgtcg 2926

                                                                        
Query: 292  tttgtgattccagtgccatggagatcaagtgtagtaagccgccagcacttcttgaataaa 351
            ||||||||| ||||||||||||||||||||||| | ||| || |||| ||  |||| |||
Sbjct: 2925 tttgtgatttcagtgccatggagatcaagtgtaatgagctgcgagcattttatgaagaaa 2866

                                                                        
Query: 352  ctcggcggtagggaattaagaccattgttccttagatgcagagtcttaagattgtgaagg 411
               |  ||||||||  ||||||||||||||| || |  || || ||| ||||  ||||||
Sbjct: 2865 gctgaaggtagggatgtaagaccattgttccgtacactcaaagccttgagatgttgaagg 2806

                                                                        
Query: 412  tttccacaagcctttggtagctcggctaaaagatttgatgataagtcaacctcaaagaga 471
            |||||| |||||| ||| || || || |||||||||||||| || |||||||||  ||||
Sbjct: 2805 tttccaaaagcctctggcagttcagccaaaagatttgatgacaaatcaacctcattgaga 2746

                                                                        
Query: 472  gattcacaatcgcctatagaggaaggcagcgaagttatcctattattatttgctataaga 531
            ||||||||| | |||||||| |||||||  |||||||||||||||||||||||||| |||
Sbjct: 2745 gattcacaaccacctatagatgaaggcaatgaagttatcctattattatttgctatcaga 2686

                                                                        
Query: 532  atctctagctgcttcagcaaacctatttcaacaggtaggctaccaagcatgttatttgca 591
            ||||| || |||||||| || |||||||||||||||| | |  ||||| |||||||||||
Sbjct: 2685 atctcaagatgcttcagtaaccctatttcaacaggtaagttctcaagcctgttatttgca 2626

                                                    
Query: 592  atgcgaagttcacgtagaaaagtcaatgtgcccaaacttg 631
            || ||||||||||||| |  ||| | || |||||||||||
Sbjct: 2625 atacgaagttcacgtaaatgagttattgagcccaaacttg 2586
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>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16,
             complete sequence
          Length = 179157

 Score =  107 bits (54), Expect = 4e-20
 Identities = 87/98 (88%)
 Strand = Plus / Plus

                                                                         
Query: 510   cctattattatttgctataagaatctctagctgcttcagcaaacctatttcaacaggtag 569
             |||||||||||||||||| |||||||| || |||||||| || |||||||||||||||| 
Sbjct: 32936 cctattattatttgctatcagaatctcaagatgcttcagtaaccctatttcaacaggtaa 32995

                                                   
Query: 570   gctaccaagcatgttatttgcaatgcgaagttcacgta 607
             | |  ||||| ||||||||||||| |||||||||||||
Sbjct: 32996 gttctcaagcctgttatttgcaatacgaagttcacgta 33033



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 92/108 (85%)
 Strand = Plus / Plus

                                                                         
Query: 172   tcatccgcaccctcgtcgaaaacacctgatgatcctacacgaaaatccagctgcttttga 231
             ||||||||||| || ||||| ||| |||||||||| || || ||||| ||||||||||||
Sbjct: 30877 tcatccgcaccttcatcgaacacaactgatgatcccacccggaaatcgagctgcttttga 30936

                                                             
Query: 232   tacttctgccgcctacgttcgtcaaactcctcccagccctccatctgt 279
             | ||||| ||  | ||||||||||||||||||||| || |||| ||||
Sbjct: 30937 tgcttcttccttcgacgttcgtcaaactcctcccaaccgtccacctgt 30984



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                          
Query: 280   cgaagaatgtcgtttgtgattccagtgccatggagatcaagtgta 324
             ||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 31492 cgaagaacgtcgtttgtgatttcagtgccatggagatcaagtgta 31536



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                       
Query: 406   tgaaggtttccacaagcctttggtagctcggctaaaagatttgatgataagtcaacct 463
             |||||||||||| |||||| ||| || || || |||||||||||||| || |||||||
Sbjct: 32379 tgaaggtttccaaaagcctctggcagttcagccaaaagatttgatgacaaatcaacct 32436



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                          
Query: 468   gagagattcacaatcgcctatagaggaaggcagcgaagttatcct 512
             ||||||||||||| | |||||||| |||||||  |||||||||||
Sbjct: 32558 gagagattcacaaccacctatagatgaaggcaatgaagttatcct 32602
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  107 bits (54), Expect = 4e-20
 Identities = 105/122 (86%)
 Strand = Plus / Plus

                                                                            
Query: 510      cctattattatttgctataagaatctctagctgcttcagcaaacctatttcaacaggtag 569
                |||||||||||||||||| |||||||| || |||||||| || |||||||||||||||| 
Sbjct: 16154047 cctattattatttgctatcagaatctcaagatgcttcagtaaccctatttcaacaggtaa 16154106

                                                                            
Query: 570      gctaccaagcatgttatttgcaatgcgaagttcacgtagaaaagtcaatgtgcccaaact 629
                | |  ||||| ||||||||||||| ||||||||||||| |  ||| | || |||||||||
Sbjct: 16154107 gttctcaagcctgttatttgcaatacgaagttcacgtaaatgagttattgagcccaaact 16154166

                  
Query: 630      tg 631
                ||
Sbjct: 16154167 tg 16154168



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 92/108 (85%)
 Strand = Plus / Plus

                                                                            
Query: 172      tcatccgcaccctcgtcgaaaacacctgatgatcctacacgaaaatccagctgcttttga 231
                ||||||||||| || ||||| ||| |||||||||| || || ||||| ||||||||||||
Sbjct: 16151988 tcatccgcaccttcatcgaacacaactgatgatcccacccggaaatcgagctgcttttga 16152047

                                                                
Query: 232      tacttctgccgcctacgttcgtcaaactcctcccagccctccatctgt 279
                | ||||| ||  | ||||||||||||||||||||| || |||| ||||
Sbjct: 16152048 tgcttcttccttcgacgttcgtcaaactcctcccaaccgtccacctgt 16152095



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                             
Query: 280      cgaagaatgtcgtttgtgattccagtgccatggagatcaagtgta 324
                ||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 16152603 cgaagaacgtcgtttgtgatttcagtgccatggagatcaagtgta 16152647



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                          
Query: 406      tgaaggtttccacaagcctttggtagctcggctaaaagatttgatgataagtcaacct 463
                |||||||||||| |||||| ||| || || || |||||||||||||| || |||||||
Sbjct: 16153490 tgaaggtttccaaaagcctctggcagttcagccaaaagatttgatgacaaatcaacct 16153547



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                             
Query: 468      gagagattcacaatcgcctatagaggaaggcagcgaagttatcct 512
                ||||||||||||| | |||||||| |||||||  |||||||||||
Sbjct: 16153669 gagagattcacaaccacctatagatgaaggcaatgaagttatcct 16153713
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  107 bits (54), Expect = 4e-20
 Identities = 87/98 (88%)
 Strand = Plus / Plus

                                                                            
Query: 510      cctattattatttgctataagaatctctagctgcttcagcaaacctatttcaacaggtag 569
                |||||||||||||||||| |||||||| || |||||||| || |||||||||||||||| 
Sbjct: 16162288 cctattattatttgctatcagaatctcaagatgcttcagtaaccctatttcaacaggtaa 16162347

                                                      
Query: 570      gctaccaagcatgttatttgcaatgcgaagttcacgta 607
                | |  ||||| ||||||||||||| |||||||||||||
Sbjct: 16162348 gttctcaagcctgttatttgcaatacgaagttcacgta 16162385



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 92/108 (85%)
 Strand = Plus / Plus

                                                                            
Query: 172      tcatccgcaccctcgtcgaaaacacctgatgatcctacacgaaaatccagctgcttttga 231
                ||||||||||| || ||||| ||| |||||||||| || || ||||| ||||||||||||
Sbjct: 16160229 tcatccgcaccttcatcgaacacaactgatgatcccacccggaaatcgagctgcttttga 16160288

                                                                
Query: 232      tacttctgccgcctacgttcgtcaaactcctcccagccctccatctgt 279
                | ||||| ||  | ||||||||||||||||||||| || |||| ||||
Sbjct: 16160289 tgcttcttccttcgacgttcgtcaaactcctcccaaccgtccacctgt 16160336



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                             
Query: 280      cgaagaatgtcgtttgtgattccagtgccatggagatcaagtgta 324
                ||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 16160844 cgaagaacgtcgtttgtgatttcagtgccatggagatcaagtgta 16160888



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                          
Query: 406      tgaaggtttccacaagcctttggtagctcggctaaaagatttgatgataagtcaacct 463
                |||||||||||| |||||| ||| || || || |||||||||||||| || |||||||
Sbjct: 16161731 tgaaggtttccaaaagcctctggcagttcagccaaaagatttgatgacaaatcaacct 16161788



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                             
Query: 468      gagagattcacaatcgcctatagaggaaggcagcgaagttatcct 512
                ||||||||||||| | |||||||| |||||||  |||||||||||
Sbjct: 16161910 gagagattcacaaccacctatagatgaaggcaatgaagttatcct 16161954
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>gb|AY111464.1| Zea mays CL9462_1 mRNA sequence
          Length = 803

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 123/151 (81%)
 Strand = Plus / Plus

                                                                       
Query: 442 agatttgatgataagtcaacctcaaagagagattcacaatcgcctatagaggaaggcagc 501
           ||||||||||| | || |||| ||  ||||||||||||||| ||||| || |||||||  
Sbjct: 390 agatttgatgacaggtgaaccacagtgagagattcacaatctcctattgatgaaggcaat 449

                                                                       
Query: 502 gaagttatcctattattatttgctataagaatctctagctgcttcagcaaacctatttca 561
           ||||||||||| || ||||||||||| || | ||  || ||||||||||  |||||||| 
Sbjct: 450 gaagttatcctgttgttatttgctatgaggacctggaggtgcttcagcagtcctatttct 509

                                          
Query: 562 acaggtaggctaccaagcatgttatttgcaa 592
           ||||| | | || ||||| |||| |||||||
Sbjct: 510 acaggcaagttatcaagcctgttctttgcaa 540



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                       
Query: 276 ctgtcgaagaatgtcgtttgtgattccagtgccatggagatcaagtgtagtaagccgcca 335
           |||||||||||  || ||||||||| | |||||||||||||| |||||||||||| || |
Sbjct: 224 ctgtcgaagaacatcatttgtgatttctgtgccatggagatccagtgtagtaagctgcga 283

               
Query: 336 gcac 339
           ||||
Sbjct: 284 gcac 287
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>ref|NM_128565.2| Arabidopsis thaliana unknown protein AT2G30100 mRNA, complete cds
          Length = 2860

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 208  acacgaaaatccagctgcttttgat 232
            ||||||||||| |||||||||||||
Sbjct: 2648 acacgaaaatcaagctgcttttgat 2624
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>ref|XM_417499.1| PREDICTED: Gallus gallus similar to Cas/HEF-like protein 1
            (LOC419330), mRNA
          Length = 4365

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 526  ataagaatctctagctgcttc 546
            |||||||||||||||||||||
Sbjct: 2696 ataagaatctctagctgcttc 2676
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>gb|AC004165.3| Arabidopsis thaliana chromosome 2 clone T27E13 map m283, complete
             sequence
          Length = 83796

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 208   acacgaaaatccagctgcttttgat 232
             ||||||||||| |||||||||||||
Sbjct: 53778 acacgaaaatcaagctgcttttgat 53802
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>gb|AF325196.1|AF325196 Triticum aestivum PST19 (Pst19), LRR19 (Lrr19), TAK19-1 (Tak19-1), and
             LRK19 (Lrk19) genes, complete cds
          Length = 35872

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 31    tttatgcgacaagtaattccg 51
             |||||||||||||||||||||
Sbjct: 33707 tttatgcgacaagtaattccg 33727
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>emb|BX819490.1|CNS0A8ZR Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB83ZB12 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1328

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 208  acacgaaaatccagctgcttttgat 232
            ||||||||||| |||||||||||||
Sbjct: 1147 acacgaaaatcaagctgcttttgat 1123
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>emb|BX821459.1|CNS0A8CR Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTSIL43ZC04 of Silique of strain col-0 of Arabidopsis
            thaliana (thale cress)
          Length = 1269

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 208  acacgaaaatccagctgcttttgat 232
            ||||||||||| |||||||||||||
Sbjct: 1082 acacgaaaatcaagctgcttttgat 1058
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>gb|AC099627.10| Mus musculus chromosome 7, clone RP24-69E5, complete sequence
          Length = 244051

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 512    tattattatttgctataagaa 532
              |||||||||||||||||||||
Sbjct: 171607 tattattatttgctataagaa 171627
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>ref|XM_520033.1| PREDICTED: Pan troglodytes hypothetical protein XP_520033
           (LOC464480), mRNA
          Length = 621

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 248 gttcgtcaaactcctcccag 267
           ||||||||||||||||||||
Sbjct: 184 gttcgtcaaactcctcccag 165
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>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence
          Length = 177245

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 3      ttagttttaaatacatnattttg 25
              |||||||||||||||| ||||||
Sbjct: 116316 ttagttttaaatacatgattttg 116294
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>gb|AY756173.1| Homo sapiens ficolin (collagen/fibrinogen domain containing) 3
            (Hakata antigen) (FCN3) gene, complete cds
          Length = 9628

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 257  actcctcccagccctccatc 276
            ||||||||||||||||||||
Sbjct: 2991 actcctcccagccctccatc 2972
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>gb|AC132461.3| Mus musculus chromosome 5 clone RP23-33C9, complete sequence
          Length = 196803

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 73    ataatgtgaggaataatatc 92
             ||||||||||||||||||||
Sbjct: 93049 ataatgtgaggaataatatc 93030
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>gb|DQ160294.1| Feline coronavirus strain FCoV/NTU2/R/2003 spike protein (S), 3a
            non-structural protein (3a), 3b non-structural protein
            (3b), 3c non-structural protein (3c), envelope protein
            (E), membrane protein (M), nucleocapsid protein (N), 7a
            non-structural protein (7a), and 7b non-structural
            protein (7b) genes, complete cds
          Length = 8909

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 549  caaacctatttcaacaggta 568
            ||||||||||||||||||||
Sbjct: 2636 caaacctatttcaacaggta 2655
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>gb|BC038534.1| Homo sapiens chromosome 8 open reading frame 74, mRNA (cDNA clone
           IMAGE:5169579), with apparent retained intron
          Length = 1220

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 248 gttcgtcaaactcctcccag 267
           ||||||||||||||||||||
Sbjct: 111 gttcgtcaaactcctcccag 92
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>gb|BC065837.1| Homo sapiens chromosome 8 open reading frame 74, mRNA (cDNA clone
           IMAGE:30383595), partial cds
          Length = 1080

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 248 gttcgtcaaactcctcccag 267
           ||||||||||||||||||||
Sbjct: 135 gttcgtcaaactcctcccag 116
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>emb|AL663123.1| Human DNA sequence from clone RP11-4K3 on chromosome 1 Contains the
            3' end of a novel gene (KIAA1037), a novel gene, a SMT3
            suppressor of mif two 3 homolog 2 (yeast) (SMT3H2)
            pseudogene, a novel gene (DKFZP564D0478), an  actin, beta
            (ACTB) pseudogene, the gene for  NADPH oxidase-related,
            C2 domain-containing protein (JFC1), the MAP3K6 gene for
            mitogen-activated protein kinase kinase kinase 6, the
            FCN3 gene for ficolin (collagen/fibrinogen domain
            containing) 3 (Hakata antigen) and a CpG island, complete
            sequence
          Length = 81740

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 257  actcctcccagccctccatc 276
            ||||||||||||||||||||
Sbjct: 4480 actcctcccagccctccatc 4461
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>ref|NM_001040032.1| Homo sapiens chromosome 8 open reading frame 74 (C8orf74), mRNA
          Length = 1080

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 248 gttcgtcaaactcctcccag 267
           ||||||||||||||||||||
Sbjct: 135 gttcgtcaaactcctcccag 116
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>gb|AC104390.6| Homo sapiens chromosome 15, clone CTD-2643K12, complete sequence
          Length = 201225

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 364    gaattaagaccattgttcct 383
              ||||||||||||||||||||
Sbjct: 122284 gaattaagaccattgttcct 122303
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>gb|AC161576.7| Mus musculus chromosome 8, clone RP24-315L4, complete sequence
          Length = 180039

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 3     ttagttttaaatacatnattttg 25
             |||||||||||||||| ||||||
Sbjct: 48667 ttagttttaaatacatgattttg 48645
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>emb|BX247953.2| Mouse DNA sequence from clone RP23-289L21 on chromosome 4 Contains a
             novel gene, a novel pseudogene, the Rrm2-ps1 gene for
             ribonucleotide reductase M2 pseudogene 1 and a
             heterogeneous nuclear ribonucleoprotein D (Hnrpd)
             pseudogene, complete sequence
          Length = 159473

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 365   aattaagaccattgttcctt 384
             ||||||||||||||||||||
Sbjct: 19167 aattaagaccattgttcctt 19148
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>dbj|AK131443.1| Homo sapiens cDNA FLJ16578 fis, clone TESTI2035981
          Length = 1919

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 248 gttcgtcaaactcctcccag 267
           ||||||||||||||||||||
Sbjct: 119 gttcgtcaaactcctcccag 100
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>emb|CR604997.1| full-length cDNA clone CS0DJ003YB07 of T cells (Jurkat cell line)
           Cot 10-normalized of Homo sapiens (human)
          Length = 3114

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 257 actcctcccagccctccatc 276
           ||||||||||||||||||||
Sbjct: 765 actcctcccagccctccatc 746
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>gb|AC105001.3| Homo sapiens chromosome 8, clone CTD-2135J3, complete sequence
          Length = 157442

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 248   gttcgtcaaactcctcccag 267
             ||||||||||||||||||||
Sbjct: 30596 gttcgtcaaactcctcccag 30577
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>dbj|AB168433.1| Macaca fascicularis testis cDNA clone: QtsA-12125, similar to human
           RIKEN cDNA 4930578I06 (LOC203076), mRNA, RefSeq:
           XM_114621.4
          Length = 2367

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 248 gttcgtcaaactcctcccag 267
           ||||||||||||||||||||
Sbjct: 101 gttcgtcaaactcctcccag 82
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>emb|CR626858.1| Rice Cluster I (RC-I), uncultured archeon clone 1B6 complete sequence
          Length = 43820

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 487   atagaggaaggcagcgaagt 506
             ||||||||||||||||||||
Sbjct: 33590 atagaggaaggcagcgaagt 33571
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>gb|U15802.1|PTU15802 Paramecium tetraurelia cell cycle control CDC2 (cdc2) gene,
           complete cds
          Length = 1092

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 508 atcctattattatttgctat 527
           ||||||||||||||||||||
Sbjct: 154 atcctattattatttgctat 173
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>dbj|AB088223.1| Feline infectious peritonitis virus S gene for peplomer protein,
            complete cds, strain:Black
          Length = 4389

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 549  caaacctatttcaacaggta 568
            ||||||||||||||||||||
Sbjct: 2556 caaacctatttcaacaggta 2575
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>dbj|AB088222.1| Feline infectious peritonitis virus S gene for peplomer protein,
            complete cds, strain:UCD1
          Length = 4374

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 549  caaacctatttcaacaggta 568
            ||||||||||||||||||||
Sbjct: 2541 caaacctatttcaacaggta 2560


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,385,726
Number of Sequences: 3902068
Number of extensions: 5385726
Number of successful extensions: 91116
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90979
Number of HSP's gapped (non-prelim): 134
length of query: 632
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 609
effective length of database: 17,143,297,704
effective search space: 10440268301736
effective search space used: 10440268301736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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