ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags16c15 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_187682.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1101 Score = 244 bits (123), Expect = 2e-61 Identities = 167/182 (91%) Strand = Plus / Minus Query: 315 aggctttcgtagaagagtatgtagccgttgtcggtgttaccactgaactcctgtgccgag 374 |||||||| |||||||||||||||||||| || ||||||||||||||||| ||||| ||| Sbjct: 1085 aggctttcatagaagagtatgtagccgttatcagtgttaccactgaactcttgtgctgag 1026 Query: 375 ccgaagaatgtctgtaccatggactcatcggtcatctcaacagtctcgtcgtcgaagaac 434 || |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct: 1025 ccaaagaatgtctgtaccatggactcatcagtcatctcaacattctcgtcgtcgaagaac 966 Query: 435 aaccagtggttgtggctcttgaccacgctgatgtagtggccgngatttggcccacttcca 494 |||||||||||||||||||| || | |||||| |||||||| ||||||| ||||||||| Sbjct: 965 aaccagtggttgtggctcttcactaagctgatatagtggccatgatttggtccacttcca 906 Query: 495 ac 496 || Sbjct: 905 ac 904
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 244 bits (123), Expect = 2e-61 Identities = 167/182 (91%) Strand = Plus / Plus Query: 315 aggctttcgtagaagagtatgtagccgttgtcggtgttaccactgaactcctgtgccgag 374 |||||||| |||||||||||||||||||| || ||||||||||||||||| ||||| ||| Sbjct: 4697174 aggctttcatagaagagtatgtagccgttatcagtgttaccactgaactcttgtgctgag 4697233 Query: 375 ccgaagaatgtctgtaccatggactcatcggtcatctcaacagtctcgtcgtcgaagaac 434 || |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct: 4697234 ccaaagaatgtctgtaccatggactcatcagtcatctcaacattctcgtcgtcgaagaac 4697293 Query: 435 aaccagtggttgtggctcttgaccacgctgatgtagtggccgngatttggcccacttcca 494 |||||||||||||||||||| || | |||||| |||||||| ||||||| ||||||||| Sbjct: 4697294 aaccagtggttgtggctcttcactaagctgatatagtggccatgatttggtccacttcca 4697353 Query: 495 ac 496 || Sbjct: 4697354 ac 4697355
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 244 bits (123), Expect = 2e-61 Identities = 167/182 (91%) Strand = Plus / Plus Query: 315 aggctttcgtagaagagtatgtagccgttgtcggtgttaccactgaactcctgtgccgag 374 |||||||| |||||||||||||||||||| || ||||||||||||||||| ||||| ||| Sbjct: 4697289 aggctttcatagaagagtatgtagccgttatcagtgttaccactgaactcttgtgctgag 4697348 Query: 375 ccgaagaatgtctgtaccatggactcatcggtcatctcaacagtctcgtcgtcgaagaac 434 || |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct: 4697349 ccaaagaatgtctgtaccatggactcatcagtcatctcaacattctcgtcgtcgaagaac 4697408 Query: 435 aaccagtggttgtggctcttgaccacgctgatgtagtggccgngatttggcccacttcca 494 |||||||||||||||||||| || | |||||| |||||||| ||||||| ||||||||| Sbjct: 4697409 aaccagtggttgtggctcttcactaagctgatatagtggccatgatttggtccacttcca 4697468 Query: 495 ac 496 || Sbjct: 4697469 ac 4697470
>dbj|AK069100.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004H19, full insert sequence Length = 1597 Score = 244 bits (123), Expect = 2e-61 Identities = 167/182 (91%) Strand = Plus / Minus Query: 315 aggctttcgtagaagagtatgtagccgttgtcggtgttaccactgaactcctgtgccgag 374 |||||||| |||||||||||||||||||| || ||||||||||||||||| ||||| ||| Sbjct: 1264 aggctttcatagaagagtatgtagccgttatcagtgttaccactgaactcttgtgctgag 1205 Query: 375 ccgaagaatgtctgtaccatggactcatcggtcatctcaacagtctcgtcgtcgaagaac 434 || |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct: 1204 ccaaagaatgtctgtaccatggactcatcagtcatctcaacattctcgtcgtcgaagaac 1145 Query: 435 aaccagtggttgtggctcttgaccacgctgatgtagtggccgngatttggcccacttcca 494 |||||||||||||||||||| || | |||||| |||||||| ||||||| ||||||||| Sbjct: 1144 aaccagtggttgtggctcttcactaagctgatatagtggccatgatttggtccacttcca 1085 Query: 495 ac 496 || Sbjct: 1084 ac 1083
>gb|AC121489.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1217B09, complete sequence Length = 148894 Score = 244 bits (123), Expect = 2e-61 Identities = 167/182 (91%) Strand = Plus / Plus Query: 315 aggctttcgtagaagagtatgtagccgttgtcggtgttaccactgaactcctgtgccgag 374 |||||||| |||||||||||||||||||| || ||||||||||||||||| ||||| ||| Sbjct: 138129 aggctttcatagaagagtatgtagccgttatcagtgttaccactgaactcttgtgctgag 138188 Query: 375 ccgaagaatgtctgtaccatggactcatcggtcatctcaacagtctcgtcgtcgaagaac 434 || |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct: 138189 ccaaagaatgtctgtaccatggactcatcagtcatctcaacattctcgtcgtcgaagaac 138248 Query: 435 aaccagtggttgtggctcttgaccacgctgatgtagtggccgngatttggcccacttcca 494 |||||||||||||||||||| || | |||||| |||||||| ||||||| ||||||||| Sbjct: 138249 aaccagtggttgtggctcttcactaagctgatatagtggccatgatttggtccacttcca 138308 Query: 495 ac 496 || Sbjct: 138309 ac 138310
>gb|BT018399.1| Zea mays clone EL01N0323A06.d mRNA sequence Length = 1503 Score = 165 bits (83), Expect = 2e-37 Identities = 157/182 (86%) Strand = Plus / Minus Query: 315 aggctttcgtagaagagtatgtagccgttgtcggtgttaccactgaactcctgtgccgag 374 |||||||| ||||||||||||||||| || || |||||||||||||||||||| | ||| Sbjct: 1161 aggctttcatagaagagtatgtagccattatcagtgttaccactgaactcctgcggtgag 1102 Query: 375 ccgaagaatgtctgtaccatggactcatcggtcatctcaacagtctcgtcgtcgaagaac 434 || ||||||| ||| |||||||||||||| ||||||||||| ||||||| || ||||| Sbjct: 1101 ccaaagaatgcctggaccatggactcatcagtcatctcaacgttctcgtcatcaaagaat 1042 Query: 435 aaccagtggttgtggctcttgaccacgctgatgtagtggccgngatttggcccacttcca 494 ||||| || ||||||||||| |||| ||||| |||||||| | ||||||||||||||| Sbjct: 1041 aaccaatgattgtggctcttaaccaaactgatatagtggccatggtttggcccacttcca 982 Query: 495 ac 496 || Sbjct: 981 ac 980
>gb|AY109971.1| Zea mays CL15956_1 mRNA sequence Length = 1420 Score = 137 bits (69), Expect = 4e-29 Identities = 140/164 (85%) Strand = Plus / Plus Query: 333 atgtagccgttgtcggtgttaccactgaactcctgtgccgagccgaagaatgtctgtacc 392 |||||||| || || |||||||||||||||||||| | ||||| ||||||| ||| ||| Sbjct: 329 atgtagccattatcagtgttaccactgaactcctgcggtgagccaaagaatgcctggacc 388 Query: 393 atggactcatcggtcatctcaacagtctcgtcgtcgaagaacaaccagtggttgtggctc 452 ||||||||||| ||||||||||| ||||||| || ||||| ||||| || ||||||||| Sbjct: 389 atggactcatcagtcatctcaacgttctcgtcatcaaagaataaccaatgattgtggctc 448 Query: 453 ttgaccacgctgatgtagtggccgngatttggcccacttccaac 496 || |||| ||||| |||||||| | ||||||||||||||||| Sbjct: 449 ttaaccaaactgatatagtggccatggtttggcccacttccaac 492
>gb|AY104984.1| Zea mays PCO121949 mRNA sequence Length = 1745 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 423 tcgtcgaagaacaaccagtggttgtggctcttgac 457 ||||||||||||||||||||||||||||| ||||| Sbjct: 1306 tcgtcgaagaacaaccagtggttgtggcttttgac 1272
>ref|XM_472684.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1098 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 426 tcgaagaacaaccagtggttgtggctcttgac 457 |||||||||||||||||||||||||| ||||| Sbjct: 971 tcgaagaacaaccagtggttgtggcttttgac 940
>emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086B14, complete sequence Length = 175698 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 426 tcgaagaacaaccagtggttgtggctcttgac 457 |||||||||||||||||||||||||| ||||| Sbjct: 146368 tcgaagaacaaccagtggttgtggcttttgac 146399
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 426 tcgaagaacaaccagtggttgtggctcttgac 457 |||||||||||||||||||||||||| ||||| Sbjct: 22542613 tcgaagaacaaccagtggttgtggcttttgac 22542644
>dbj|AK068069.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134H10, full insert sequence Length = 1735 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 426 tcgaagaacaaccagtggttgtggctcttgac 457 |||||||||||||||||||||||||| ||||| Sbjct: 1337 tcgaagaacaaccagtggttgtggcttttgac 1306
>gb|BT014048.1| Lycopersicon esculentum clone 133145F, mRNA sequence Length = 1683 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 429 aagaacaaccagtggttgtggct 451 ||||||||||||||||||||||| Sbjct: 1055 aagaacaaccagtggttgtggct 1033
>gb|AC121805.3| Mus musculus BAC clone RP23-443L2 from chromosome 10, complete sequence Length = 194006 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 254 aaaggaaaaaactgtgttgct 274 ||||||||||||||||||||| Sbjct: 4723 aaaggaaaaaactgtgttgct 4703
>gb|AC155830.7| Mus musculus 10 BAC RP24-495I3 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 189267 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 254 aaaggaaaaaactgtgttgct 274 ||||||||||||||||||||| Sbjct: 166730 aaaggaaaaaactgtgttgct 166710
>gb|AY325816.1| Zea mays BAC clone Z013I05, complete sequence Length = 152337 Score = 42.1 bits (21), Expect = 1.7 Identities = 42/49 (85%) Strand = Plus / Minus Query: 315 aggctttcgtagaagagtatgtagccgttgtcggtgttaccactgaact 363 |||||||| || |||||||||||| | | || |||||||||||||||| Sbjct: 58324 aggctttcataaaagagtatgtagtcatcatcagtgttaccactgaact 58276
>gb|AC092588.2| Homo sapiens BAC clone RP11-44A12 from 2, complete sequence Length = 140401 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 ttcgaattattctaatttac 213 |||||||||||||||||||| Sbjct: 57058 ttcgaattattctaatttac 57077
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 tgccacaacggaaaacaacg 78 |||||||||||||||||||| Sbjct: 32950212 tgccacaacggaaaacaacg 32950231
>gb|AC177808.2| Pan troglodytes BAC clone CH251-703A9 from chromosome unknown, complete sequence Length = 207792 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 aaacaccgactccacaaaaa 167 |||||||||||||||||||| Sbjct: 58302 aaacaccgactccacaaaaa 58321
>dbj|AP003224.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0010B10 Length = 155263 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 tgccacaacggaaaacaacg 78 |||||||||||||||||||| Sbjct: 16440 tgccacaacggaaaacaacg 16459 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,518,495 Number of Sequences: 3902068 Number of extensions: 3518495 Number of successful extensions: 57367 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57283 Number of HSP's gapped (non-prelim): 84 length of query: 502 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 480 effective length of database: 17,147,199,772 effective search space: 8230655890560 effective search space used: 8230655890560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
