ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags16c13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CEMA_CHLRE (Q37050) Chloroplast envelope membrane protein 30 3.8
2ODP1_BUCAI (P57301) Pyruvate dehydrogenase E1 component (EC 1.2.... 29 5.0
3Y1411_SYNY3 (P72725) UPF0272 protein slr1411 29 5.0

>CEMA_CHLRE (Q37050) Chloroplast envelope membrane protein|
          Length = 500

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 295 HSISQVLLFSCWQLNLYTLLYVLVA*EIQV 384
           HSI  +  F    L+L+TLLY+L+  EIQ+
Sbjct: 373 HSIEAITNFFADLLSLFTLLYLLITLEIQI 402



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>ODP1_BUCAI (P57301) Pyruvate dehydrogenase E1 component (EC 1.2.4.1)|
          Length = 887

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 179 LGTLDKRKNIAAQMKHVYTVGPIHVRKNYGVLVGKKE 289
           +G + + KNIA Q+K +   G IH+R  + + V   E
Sbjct: 397 MGVIAEGKNIAHQIKKININGIIHIRDRFNIPVSNDE 433



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>Y1411_SYNY3 (P72725) UPF0272 protein slr1411|
          Length = 422

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
 Frame = +2

Query: 140 NMSH--ELIYRAVTSLGTLDKRKNIAAQMKHVYTV----GPIHVRKNYGVLVGKK 286
           N +H   L++R  TSLG   +++   A  +   TV    GPI ++  YG   GKK
Sbjct: 323 NQNHCLNLLFRETTSLGVRVRQQQRYALEREWQTVVIPHGPIRIKVAYGYQAGKK 377


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,021,342
Number of Sequences: 219361
Number of extensions: 1417364
Number of successful extensions: 3853
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3853
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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