ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags15n10 |
|---|---|
| Clone Library Name | barley_pub |
>PAHX_HUMAN (O14832) Phytanoyl-CoA dioxygenase, peroxisomal precursor (EC| 1.14.11.18) (Phytanoyl-CoA alpha-hydroxylase) (PhyH) (Phytanic acid oxidase) Length = 338 Score = 48.1 bits (113), Expect = 6e-06 Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 3/89 (3%) Frame = -2 Query: 285 WLALEDATXTNGCLWAIPGSHKNGLK-RRMIRDENGTH--FDRPSPLYDQKEFVPLEMKS 115 W A+E + NGCL +PG+HK LK + E G + F + K V L M+ Sbjct: 193 WTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQDYEENKARVHLVMEK 252 Query: 114 GDFVVIHGDXVHQSFENLSPVSRHALSLH 28 GD V H +H S +N + R A+S H Sbjct: 253 GDTVFFHPLLIHGSGQNKTQGFRKAISCH 281
>PAHX_CAEEL (O62515) Probable phytanoyl-CoA dioxygenase (EC 1.14.11.18)| (Phytanoyl-CoA alpha-hydroxylase) (PhyH) (Phytanic acid oxidase) Length = 312 Score = 46.2 bits (108), Expect = 2e-05 Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 3/98 (3%) Frame = -2 Query: 285 WLALEDATXTNGCLWAIPGSHKNGLKRRMIRDENGTHFDRPSPLYDQKEFVP---LEMKS 115 W A+E T NGCL +PG+HK L G + D P +EM+ Sbjct: 160 WTAMEKITRANGCLVVVPGTHKGVLLPHEYPKWEGGVNKAYHGIQDYDTSTPRIHVEMEP 219 Query: 114 GDFVVIHGDXVHQSFENLSPVSRHALSLHVVDMXGCKW 1 GD V H +H S N + R A+S H + C++ Sbjct: 220 GDTVFFHPILIHGSGANRTEGFRKAISCHYANDDLCRY 257
>PAHX_BOVIN (O18778) Phytanoyl-CoA dioxygenase, peroxisomal precursor (EC| 1.14.11.18) (Phytanoyl-CoA alpha-hydroxylase) (PhyH) (Phytanic acid oxidase) Length = 337 Score = 43.9 bits (102), Expect = 1e-04 Identities = 31/92 (33%), Positives = 39/92 (42%), Gaps = 3/92 (3%) Frame = -2 Query: 285 WLALEDATXTNGCLWAIPGSHKNGLKRRMIRD-ENGTH--FDRPSPLYDQKEFVPLEMKS 115 W A+E NGCL +PG+HK L+ E G + F V L M+ Sbjct: 193 WTAMEHIDRNNGCLVVLPGTHKGPLQPHDYPQWEGGVNIMFHGIQDYDKNNARVHLVMEK 252 Query: 114 GDFVVIHGDXVHQSFENLSPVSRHALSLHVVD 19 GD V H +H S N S R A+S H D Sbjct: 253 GDTVFFHPLLIHGSGRNKSQGFRKAISCHFAD 284
>PAHX_RAT (P57093) Phytanoyl-CoA dioxygenase, peroxisomal precursor (EC| 1.14.11.18) (Phytanoyl-CoA alpha-hydroxylase) (PhyH) (Phytanic acid oxidase) Length = 338 Score = 43.1 bits (100), Expect = 2e-04 Identities = 32/95 (33%), Positives = 42/95 (44%), Gaps = 9/95 (9%) Frame = -2 Query: 285 WLALEDATXTNGCLWAIPGSHKNGLK-RRMIRDENGTH--------FDRPSPLYDQKEFV 133 W A+E NGCL +PG+HK LK + E G + +D SP V Sbjct: 193 WTAMEHIDRNNGCLVVLPGTHKGPLKPHDYPKWEGGVNKMYHGIQDYDPDSPR------V 246 Query: 132 PLEMKSGDFVVIHGDXVHQSFENLSPVSRHALSLH 28 L M+ GD V H +H S N + R A+S H Sbjct: 247 HLVMEKGDTVFFHPLLIHGSGRNRTQGFRKAISCH 281
>PAHX_MOUSE (O35386) Phytanoyl-CoA dioxygenase, peroxisomal precursor (EC| 1.14.11.18) (Phytanoyl-CoA alpha-hydroxylase) (PhyH) (Phytanic acid oxidase) (Lupus nephritis-associated peptide 1) Length = 338 Score = 42.7 bits (99), Expect = 2e-04 Identities = 32/95 (33%), Positives = 42/95 (44%), Gaps = 9/95 (9%) Frame = -2 Query: 285 WLALEDATXTNGCLWAIPGSHKNGLK-RRMIRDENGTH--------FDRPSPLYDQKEFV 133 W A+E NGCL +PG+HK LK + E G + +D SP V Sbjct: 193 WTAMEHIDRNNGCLVVLPGTHKGTLKPHDYPKWEGGVNKMYHGIQDYDPNSPR------V 246 Query: 132 PLEMKSGDFVVIHGDXVHQSFENLSPVSRHALSLH 28 L M+ GD V H +H S N + R A+S H Sbjct: 247 HLVMEKGDTVFFHPLLIHGSGRNKTQGFRKAISCH 281
>Y3657_MYCBO (P67773) Hypothetical protein Mb3657| Length = 291 Score = 39.7 bits (91), Expect = 0.002 Identities = 27/90 (30%), Positives = 44/90 (48%) Frame = -2 Query: 297 CTGLWLALEDATXTNGCLWAIPGSHKNGLKRRMIRDENGTHFDRPSPLYDQKEFVPLEMK 118 C L +AL D T NG +PGSH+ +RPSP Y + + P+E+ Sbjct: 145 CNAL-IALCDFTADNGATQVVPGSHRWP--------------ERPSPPYPEGK--PVEIN 187 Query: 117 SGDFVVIHGDXVHQSFENLSPVSRHALSLH 28 +GD ++ +G H + N + R AL+++ Sbjct: 188 AGDALIWNGSLWHTAAANRTDAPRPALTIN 217
>Y3633_MYCTU (P67772) Hypothetical protein Rv3633/MT3735| Length = 291 Score = 39.7 bits (91), Expect = 0.002 Identities = 27/90 (30%), Positives = 44/90 (48%) Frame = -2 Query: 297 CTGLWLALEDATXTNGCLWAIPGSHKNGLKRRMIRDENGTHFDRPSPLYDQKEFVPLEMK 118 C L +AL D T NG +PGSH+ +RPSP Y + + P+E+ Sbjct: 145 CNAL-IALCDFTADNGATQVVPGSHRWP--------------ERPSPPYPEGK--PVEIN 187 Query: 117 SGDFVVIHGDXVHQSFENLSPVSRHALSLH 28 +GD ++ +G H + N + R AL+++ Sbjct: 188 AGDALIWNGSLWHTAAANRTDAPRPALTIN 217
>OTUD3_HUMAN (Q5T2D3) OTU domain-containing protein 3| Length = 398 Score = 30.4 bits (67), Expect = 1.2 Identities = 17/56 (30%), Positives = 28/56 (50%) Frame = -2 Query: 255 NGCLWAIPGSHKNGLKRRMIRDENGTHFDRPSPLYDQKEFVPLEMKSGDFVVIHGD 88 N LW I G+ K+ ++ I G H+D + D E P +++ DF ++H D Sbjct: 156 NAPLWQIRGTEKSSVRELHIAYRYGEHYDSVRRINDNSE-APAHLQT-DFQMLHQD 209
>ECTD_BORBR (Q7WHJ0) Ectoine hydroxylase (EC 1.17.-.-)| Length = 308 Score = 30.0 bits (66), Expect = 1.6 Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 16/93 (17%) Frame = -2 Query: 276 LEDATXTNGCLWAIPGSHKNGL-----------KRRMIRDENGTHFDRPSP-----LYDQ 145 L D TNG L +PGSH+ + K+ + + E G P P L +Q Sbjct: 172 LTDNNETNGPLMLVPGSHRQFISCVGETPRDHYKQSLKKQEYGV----PDPVSLQLLAEQ 227 Query: 144 KEFVPLEMKSGDFVVIHGDXVHQSFENLSPVSR 46 + K+G V + +H S N+SP R Sbjct: 228 GGISTMTGKAGSVVFFDCNTMHGSNSNISPWPR 260
>NQO3_THET8 (Q56223) NADH-quinone oxidoreductase subunit 3 (EC 1.6.99.5) (NADH| dehydrogenase I chain 3) (NDH-1 subunit 3) Length = 783 Score = 29.6 bits (65), Expect = 2.0 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 8/83 (9%) Frame = -2 Query: 234 PGSHKNGLKRR-MIRDENGTHFDRPSPLYDQKEFVPLE--MKSGDFVVIHGDXVHQSFEN 64 P ++ GL+ ++ G +D P LY FVP E +K FVV+H +H E Sbjct: 537 PAANARGLEAMGVLPGAKGASWDEPGALYAYYGFVPPEEALKGKRFVVMHLSHLHPLAER 596 Query: 63 LSPVSRHALSL-----HVVDMXG 10 + V A + H+V++ G Sbjct: 597 YAHVVLPAPTFYEKRGHLVNLEG 619
>PRGC1_BOVIN (Q865B7) Peroxisome proliferator-activated receptor gamma| coactivator 1-alpha (PPAR gamma coactivator 1-alpha) (PPARGC-1-alpha) (PGC-1-alpha) Length = 796 Score = 28.9 bits (63), Expect = 3.5 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = -2 Query: 234 PGSHKNGLKRRMIRDENGTHFDRPS-PLYDQKEFVPLEMKSGDF 106 PGS + L+ + IR E HF PS ++D K E++ DF Sbjct: 445 PGSTRKQLQDQEIRAELNKHFGHPSQAVFDDKADKTSELRDSDF 488
>SYV_HELHP (Q7VHN2) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 899 Score = 28.5 bits (62), Expect = 4.5 Identities = 12/44 (27%), Positives = 23/44 (52%) Frame = +1 Query: 163 GTIKMSAIFIPDHSPFQTIFM*SGNCP*ATIGXCCIFKRKPQSC 294 G+ + IF+ ++PF+ + C A + CI ++KP+ C Sbjct: 770 GSTNIECIFVKLNAPFEHSLLEQFVCKLAKVKTLCITQQKPKDC 813
>ECTD_STRCH (Q6QUY7) Ectoine hydroxylase (EC 1.17.-.-)| Length = 297 Score = 28.5 bits (62), Expect = 4.5 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 12/91 (13%) Frame = -2 Query: 282 LALEDATXTNGCLWAIPGSHKNGL-----------KRRMIRDENGTHFDRP-SPLYDQKE 139 +AL + TNG L +PGSHK L K+ + + GT D + + D+ Sbjct: 170 IALTENFDTNGGLMIMPGSHKTFLGCAGETPKDNYKKSLQMQDAGTPSDEALTKMADRHG 229 Query: 138 FVPLEMKSGDFVVIHGDXVHQSFENLSPVSR 46 ++G + +H S +N++P +R Sbjct: 230 IRLFTGRAGSATWFDCNAMHGSGDNITPYAR 260
>VP35_VARV (P33059) Immunodominant envelope protein p35 (Virion envelope| protein p35) Length = 325 Score = 28.1 bits (61), Expect = 5.9 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 3/71 (4%) Frame = -2 Query: 219 NGLKRRMIRDENGTHFDRPSPLYDQKEFVPLEMKSGDFVVI-HGDXVHQSFENLSPV--S 49 +G M +E + R L+D K F LE K ++VVI D V + L PV + Sbjct: 84 SGFCNTMCTEETKRNIARHLALWDSKFFTELENKKVEYVVIVENDNVIEDITFLRPVLKA 143 Query: 48 RHALSLHVVDM 16 H + ++ M Sbjct: 144 MHDKKIDILQM 154
>Y1539_MYCBO (P67771) Hypothetical protein Mb1539| Length = 273 Score = 28.1 bits (61), Expect = 5.9 Identities = 18/85 (21%), Positives = 32/85 (37%) Frame = -2 Query: 288 LWLALEDATXTNGCLWAIPGSHKNGLKRRMIRDENGTHFDRPSPLYDQKEFVPLEMKSGD 109 + A++ T G +PGSH+ ++P Y + VP++ +G Sbjct: 142 IMFAIDPFTRDTGATLVVPGSHQ--------------RIEKPDHTYLARNAVPVQCAAGS 187 Query: 108 FVVIHGDXVHQSFENLSPVSRHALS 34 V H + N S R A++ Sbjct: 188 LFVFDSTLWHAAGRNTSGKDRLAIN 212
>Y1501_MYCTU (P67770) Hypothetical protein Rv1501/MT1550| Length = 273 Score = 28.1 bits (61), Expect = 5.9 Identities = 18/85 (21%), Positives = 32/85 (37%) Frame = -2 Query: 288 LWLALEDATXTNGCLWAIPGSHKNGLKRRMIRDENGTHFDRPSPLYDQKEFVPLEMKSGD 109 + A++ T G +PGSH+ ++P Y + VP++ +G Sbjct: 142 IMFAIDPFTRDTGATLVVPGSHQ--------------RIEKPDHTYLARNAVPVQCAAGS 187 Query: 108 FVVIHGDXVHQSFENLSPVSRHALS 34 V H + N S R A++ Sbjct: 188 LFVFDSTLWHAAGRNTSGKDRLAIN 212
>ECTD_BORPA (Q7W977) Ectoine hydroxylase (EC 1.17.-.-)| Length = 308 Score = 28.1 bits (61), Expect = 5.9 Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 16/93 (17%) Frame = -2 Query: 276 LEDATXTNGCLWAIPGSHKNGL-----------KRRMIRDENGTHFDRPSP-----LYDQ 145 L D NG L +PGSH+ + K+ + + E G P P L +Q Sbjct: 172 LTDNNEANGPLMLVPGSHRQFISCVGETPRDHYKQSLKKQEYGV----PDPVSLQLLAEQ 227 Query: 144 KEFVPLEMKSGDFVVIHGDXVHQSFENLSPVSR 46 + K+G V + +H S N+SP R Sbjct: 228 GGISTMTGKAGSVVFFDCNTMHGSNSNISPWPR 260
>TXND1_MOUSE (Q8VBT0) Thioredoxin domain-containing protein 1 precursor| Length = 278 Score = 28.1 bits (61), Expect = 5.9 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -2 Query: 246 LWAIPGSHKNGLKRRMIRDENGT 178 LWA+PG+H R++ DEN T Sbjct: 18 LWAVPGAHGRRNNVRVLTDENWT 40
>ECTD_STRAW (Q829L6) Ectoine hydroxylase (EC 1.17.-.-)| Length = 295 Score = 27.7 bits (60), Expect = 7.8 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 12/91 (13%) Frame = -2 Query: 282 LALEDATXTNGCLWAIPGSHKNGL-----------KRRMIRDENGTHFDRPSPLYDQKEF 136 +AL + TNG L +PGSHK L K+ + + GT D + + Sbjct: 168 IALTENYDTNGGLMIMPGSHKTFLGCAGATPKDNYKKSLQMQDAGTPSDEALTKFADRHG 227 Query: 135 VPL-EMKSGDFVVIHGDXVHQSFENLSPVSR 46 + L ++G + +H S +N++P R Sbjct: 228 IRLFTGRAGSATWFDCNCLHGSGDNITPFPR 258 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,035,724 Number of Sequences: 219361 Number of extensions: 748814 Number of successful extensions: 1560 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 1541 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1558 length of database: 80,573,946 effective HSP length: 74 effective length of database: 64,341,232 effective search space used: 1544189568 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
