| Clone Name | rbags15n10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK064856.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000H11, full insert sequence Length = 1588 Score = 230 bits (116), Expect = 2e-57 Identities = 237/278 (85%) Strand = Plus / Minus Query: 20 tcaactacatgcaagctcagtgcatgtcttgagactggagaaaggttctcgaagctctga 79 |||| |||||| |||||||||||||||||||| || ||||||| || || |||||||| Sbjct: 1378 tcaattacatgtaagctcagtgcatgtcttgacaccagagaaagattttcaaagctctgg 1319 Query: 80 tgtacaanatcaccatgaataacaacaaagtcacctgatttcatttccagtggtacaaac 139 ||||||| ||| ||||||||||| || || |||||||| || | ||| | ||| ||||| Sbjct: 1318 tgtacaagatctccatgaataaccaccaaatcacctgactttacttctaatggcacaaat 1259 Query: 140 tctttctgatcataaagcggggagggacgatcaaaatgagtgccattttcatccctgatc 199 |||||| ||||||| || || ||| ||||||||||||| |||||||||| |||||| Sbjct: 1258 tctttcagatcataggttggcgaaggatgatcaaaatgagtatcattttcatctctgatc 1199 Query: 200 attcgccttttcaaaccatttttatgtgatccgggaattgcccataggcaaccattggtt 259 ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct: 1198 attcgccttttcagaccatttttatgtgatccaggaattgcccataggcaaccattcgtt 1139 Query: 260 gntgttgcatcttcaagcgcaagccacaatcctgtgca 297 ||| |||||||| || ||||||||||| |||||||| Sbjct: 1138 tttgtcgcatcttcgagtgcaagccacaaccctgtgca 1101
>ref|XM_469483.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1102 Score = 184 bits (93), Expect = 1e-43 Identities = 232/279 (83%) Strand = Plus / Minus Query: 20 tcaactacatgcaagctcagtgcatgtcttgagactggagaaaggttctcgaagctctga 79 |||| |||||| |||||||||||||||||||| || |||||||| || || |||||||| Sbjct: 822 tcaattacatgtaagctcagtgcatgtcttgacaccggagaaagattttcaaagctctgg 763 Query: 80 tgtacaanatcaccatgaataacaacaaagtcacctgatttcatttccagtggtacaaac 139 |||| || ||| ||||||||||| || || |||||||| || | ||| | || ||||| Sbjct: 762 tgtataagatctccatgaataaccaccaaatcacctgactttacttctaagggcacaaat 703 Query: 140 tctttctgatcataaagcggggagggacgatcaaaatgagtgccattttcatccctgatc 199 |||||| ||||||| || || ||| ||||||||||||| | ||||||| |||||| Sbjct: 702 tctttcagatcataggttggcgaaggatgatcaaaatgagtatcgatttcatctctgatc 643 Query: 200 attcgccttttcaaaccatttttatgtgatccgggaattgcccataggcaaccattggtt 259 ||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||| Sbjct: 642 attcgccttttcaggccatttttatgtgatccaggaattgcccaaaggcaaccattcgtt 583 Query: 260 gntgttgcatcttcaagcgcaagccacaatcctgtgcac 298 ||| |||||||| || |||||||||| ||||||||| Sbjct: 582 tttgtcgcatcttcgagtgcaagccacagccctgtgcac 544
>dbj|AK104750.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-F05, full insert sequence Length = 1089 Score = 184 bits (93), Expect = 1e-43 Identities = 232/279 (83%) Strand = Plus / Minus Query: 20 tcaactacatgcaagctcagtgcatgtcttgagactggagaaaggttctcgaagctctga 79 |||| |||||| |||||||||||||||||||| || |||||||| || || |||||||| Sbjct: 804 tcaattacatgtaagctcagtgcatgtcttgacaccggagaaagattttcaaagctctgg 745 Query: 80 tgtacaanatcaccatgaataacaacaaagtcacctgatttcatttccagtggtacaaac 139 |||| || ||| ||||||||||| || || |||||||| || | ||| | || ||||| Sbjct: 744 tgtataagatctccatgaataaccaccaaatcacctgactttacttctaagggcacaaat 685 Query: 140 tctttctgatcataaagcggggagggacgatcaaaatgagtgccattttcatccctgatc 199 |||||| ||||||| || || ||| ||||||||||||| | ||||||| |||||| Sbjct: 684 tctttcagatcataggttggcgaaggatgatcaaaatgagtatcgatttcatctctgatc 625 Query: 200 attcgccttttcaaaccatttttatgtgatccgggaattgcccataggcaaccattggtt 259 ||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||| Sbjct: 624 attcgccttttcaggccatttttatgtgatccaggaattgcccaaaggcaaccattcgtt 565 Query: 260 gntgttgcatcttcaagcgcaagccacaatcctgtgcac 298 ||| |||||||| || |||||||||| ||||||||| Sbjct: 564 tttgtcgcatcttcgagtgcaagccacagccctgtgcac 526
>dbj|AK060138.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-E10, full insert sequence Length = 1089 Score = 184 bits (93), Expect = 1e-43 Identities = 232/279 (83%) Strand = Plus / Minus Query: 20 tcaactacatgcaagctcagtgcatgtcttgagactggagaaaggttctcgaagctctga 79 |||| |||||| |||||||||||||||||||| || |||||||| || || |||||||| Sbjct: 804 tcaattacatgtaagctcagtgcatgtcttgacaccggagaaagattttcaaagctctgg 745 Query: 80 tgtacaanatcaccatgaataacaacaaagtcacctgatttcatttccagtggtacaaac 139 |||| || ||| ||||||||||| || || |||||||| || | ||| | || ||||| Sbjct: 744 tgtataagatctccatgaataaccaccaaatcacctgactttacttctaagggcacaaat 685 Query: 140 tctttctgatcataaagcggggagggacgatcaaaatgagtgccattttcatccctgatc 199 |||||| ||||||| || || ||| ||||||||||||| | ||||||| |||||| Sbjct: 684 tctttcagatcataggttggcgaaggatgatcaaaatgagtatcgatttcatctctgatc 625 Query: 200 attcgccttttcaaaccatttttatgtgatccgggaattgcccataggcaaccattggtt 259 ||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||| Sbjct: 624 attcgccttttcaggccatttttatgtgatccaggaattgcccaaaggcaaccattcgtt 565 Query: 260 gntgttgcatcttcaagcgcaagccacaatcctgtgcac 298 ||| |||||||| || |||||||||| ||||||||| Sbjct: 564 tttgtcgcatcttcgagtgcaagccacagccctgtgcac 526
>dbj|AK103821.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033147H12, full insert sequence Length = 1230 Score = 178 bits (90), Expect = 7e-42 Identities = 223/268 (83%) Strand = Plus / Minus Query: 20 tcaactacatgcaagctcagtgcatgtcttgagactggagaaaggttctcgaagctctga 79 |||| |||||| |||||||||||||||||||| || |||||||| || || |||||||| Sbjct: 835 tcaattacatgtaagctcagtgcatgtcttgacaccggagaaagattttcaaagctctgg 776 Query: 80 tgtacaanatcaccatgaataacaacaaagtcacctgatttcatttccagtggtacaaac 139 |||| || ||| ||||||||||| || || |||||||| || | ||| | || ||||| Sbjct: 775 tgtataagatctccatgaataaccaccaaatcacctgactttacttctaagggcacaaat 716 Query: 140 tctttctgatcataaagcggggagggacgatcaaaatgagtgccattttcatccctgatc 199 |||||| ||||||| || || ||| ||||||||||||| | ||||||| |||||| Sbjct: 715 tctttcagatcataggttggcgaaggatgatcaaaatgagtatcgatttcatctctgatc 656 Query: 200 attcgccttttcaaaccatttttatgtgatccgggaattgcccataggcaaccattggtt 259 ||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||| Sbjct: 655 attcgccttttcaggccatttttatgtgatccaggaattgcccaaaggcaaccattcgtt 596 Query: 260 gntgttgcatcttcaagcgcaagccaca 287 ||| |||||||| || |||||||||| Sbjct: 595 tttgtcgcatcttcgagtgcaagccaca 568
>gb|AY112156.1| Zea mays CL1582_10 mRNA sequence Length = 891 Score = 153 bits (77), Expect = 4e-34 Identities = 240/297 (80%) Strand = Plus / Plus Query: 1 ccatttacatccttncatgtcaactacatgcaagctcagtgcatgtcttgagactggaga 60 |||||||||||||| | || |||||||| ||||| | |||||||||||| | ||||| Sbjct: 384 ccatttacatccttcagtatccactacatgtaagctgaatgcatgtcttgacgcaggaga 443 Query: 61 aaggttctcgaagctctgatgtacaanatcaccatgaataacaacaaagtcacctgattt 120 ||| ||||| || |||||||||| || ||| ||||| ||||| || || |||| ||||| Sbjct: 444 aagattctcaaaactctgatgtataagatctccatggataaccaccaaagcaccagattt 503 Query: 121 catttccagtggtacaaactctttctgatcataaagcggggagggacgatcaaaatgagt 180 | |||||| |||||||| |||||||| ||||| |||||||| | ||||||||| || Sbjct: 504 tacttccagcggtacaaattctttctggtcataggctggggaggggcaatcaaaatgtgt 563 Query: 181 gccattttcatccctgatcattcgccttttcaaaccatttttatgtgatccgggaattgc 240 ||||||||||| |||||||| ||||| |||||| |||||| || ||||| || Sbjct: 564 accattttcatctctgatcatacgcctcaccaaacccnnnnnatgtgagcctggaatggc 623 Query: 241 ccataggcaaccattggttgntgttgcatcttcaagcgcaagccacaatcctgtgca 297 ||| |||||||||||| | ||||||||||||||| ||||||||||| |||||||| Sbjct: 624 ccacaggcaaccattgttgattgttgcatcttcaagtgcaagccacaaccctgtgca 680
>gb|AC135924.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0486C01, complete sequence Length = 146432 Score = 95.6 bits (48), Expect = 8e-17 Identities = 71/79 (89%) Strand = Plus / Plus Query: 219 ttttatgtgatccgggaattgcccataggcaaccattggttgntgttgcatcttcaagcg 278 ||||||||||||| ||||||||||||||||||||||| ||| ||| |||||||| || | Sbjct: 61312 ttttatgtgatccaggaattgcccataggcaaccattcgtttttgtcgcatcttcgagtg 61371 Query: 279 caagccacaatcctgtgca 297 |||||||||| |||||||| Sbjct: 61372 caagccacaaccctgtgca 61390 Score = 91.7 bits (46), Expect = 1e-15 Identities = 120/145 (82%) Strand = Plus / Plus Query: 74 ctctgatgtacaanatcaccatgaataacaacaaagtcacctgatttcatttccagtggt 133 ||||| ||||||| ||| ||||||||||| || || |||||||| || | ||| | ||| Sbjct: 61074 ctctggtgtacaagatctccatgaataaccaccaaatcacctgactttacttctaatggc 61133 Query: 134 acaaactctttctgatcataaagcggggagggacgatcaaaatgagtgccattttcatcc 193 ||||| |||||| ||||||| || || ||| ||||||||||||| |||||||||| Sbjct: 61134 acaaattctttcagatcataggttggcgaaggatgatcaaaatgagtatcattttcatct 61193 Query: 194 ctgatcattcgccttttcaaaccat 218 ||||||||||||||||||| ||||| Sbjct: 61194 ctgatcattcgccttttcagaccat 61218 Score = 48.1 bits (24), Expect = 0.016 Identities = 30/32 (93%) Strand = Plus / Plus Query: 20 tcaactacatgcaagctcagtgcatgtcttga 51 |||| |||||| |||||||||||||||||||| Sbjct: 60938 tcaattacatgtaagctcagtgcatgtcttga 60969
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 95.6 bits (48), Expect = 8e-17 Identities = 71/79 (89%) Strand = Plus / Plus Query: 219 ttttatgtgatccgggaattgcccataggcaaccattggttgntgttgcatcttcaagcg 278 ||||||||||||| ||||||||||||||||||||||| ||| ||| |||||||| || | Sbjct: 23129537 ttttatgtgatccaggaattgcccataggcaaccattcgtttttgtcgcatcttcgagtg 23129596 Query: 279 caagccacaatcctgtgca 297 |||||||||| |||||||| Sbjct: 23129597 caagccacaaccctgtgca 23129615 Score = 91.7 bits (46), Expect = 1e-15 Identities = 120/145 (82%) Strand = Plus / Plus Query: 74 ctctgatgtacaanatcaccatgaataacaacaaagtcacctgatttcatttccagtggt 133 ||||| ||||||| ||| ||||||||||| || || |||||||| || | ||| | ||| Sbjct: 23129299 ctctggtgtacaagatctccatgaataaccaccaaatcacctgactttacttctaatggc 23129358 Query: 134 acaaactctttctgatcataaagcggggagggacgatcaaaatgagtgccattttcatcc 193 ||||| |||||| ||||||| || || ||| ||||||||||||| |||||||||| Sbjct: 23129359 acaaattctttcagatcataggttggcgaaggatgatcaaaatgagtatcattttcatct 23129418 Query: 194 ctgatcattcgccttttcaaaccat 218 ||||||||||||||||||| ||||| Sbjct: 23129419 ctgatcattcgccttttcagaccat 23129443 Score = 48.1 bits (24), Expect = 0.016 Identities = 30/32 (93%) Strand = Plus / Plus Query: 20 tcaactacatgcaagctcagtgcatgtcttga 51 |||| |||||| |||||||||||||||||||| Sbjct: 23129163 tcaattacatgtaagctcagtgcatgtcttga 23129194
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 81.8 bits (41), Expect = 1e-12 Identities = 70/80 (87%) Strand = Plus / Plus Query: 219 ttttatgtgatccgggaattgcccataggcaaccattggttgntgttgcatcttcaagcg 278 ||||||||||||| ||||||||||| ||||||||||| ||| ||| |||||||| || | Sbjct: 28258554 ttttatgtgatccaggaattgcccaaaggcaaccattcgtttttgtcgcatcttcgagtg 28258613 Query: 279 caagccacaatcctgtgcac 298 ||||||||| ||||||||| Sbjct: 28258614 caagccacagccctgtgcac 28258633 Score = 56.0 bits (28), Expect = 7e-05 Identities = 111/139 (79%) Strand = Plus / Plus Query: 74 ctctgatgtacaanatcaccatgaataacaacaaagtcacctgatttcatttccagtggt 133 ||||| |||| || ||| ||||||||||| || || |||||||| || | ||| | || Sbjct: 28258316 ctctggtgtataagatctccatgaataaccaccaaatcacctgactttacttctaagggc 28258375 Query: 134 acaaactctttctgatcataaagcggggagggacgatcaaaatgagtgccattttcatcc 193 ||||| |||||| ||||||| || || ||| ||||||||||||| | ||||||| Sbjct: 28258376 acaaattctttcagatcataggttggcgaaggatgatcaaaatgagtatcgatttcatct 28258435 Query: 194 ctgatcattcgccttttca 212 ||||||||||||||||||| Sbjct: 28258436 ctgatcattcgccttttca 28258454 Score = 56.0 bits (28), Expect = 7e-05 Identities = 40/44 (90%) Strand = Plus / Plus Query: 20 tcaactacatgcaagctcagtgcatgtcttgagactggagaaag 63 |||| |||||| |||||||||||||||||||| || |||||||| Sbjct: 28258180 tcaattacatgtaagctcagtgcatgtcttgacaccggagaaag 28258223
>gb|AC087797.5| Oryza sativa chromosome 3 BAC OSJNBb0022E02 genomic sequence, complete sequence Length = 122497 Score = 81.8 bits (41), Expect = 1e-12 Identities = 70/80 (87%) Strand = Plus / Plus Query: 219 ttttatgtgatccgggaattgcccataggcaaccattggttgntgttgcatcttcaagcg 278 ||||||||||||| ||||||||||| ||||||||||| ||| ||| |||||||| || | Sbjct: 109695 ttttatgtgatccaggaattgcccaaaggcaaccattcgtttttgtcgcatcttcgagtg 109754 Query: 279 caagccacaatcctgtgcac 298 ||||||||| ||||||||| Sbjct: 109755 caagccacagccctgtgcac 109774 Score = 56.0 bits (28), Expect = 7e-05 Identities = 111/139 (79%) Strand = Plus / Plus Query: 74 ctctgatgtacaanatcaccatgaataacaacaaagtcacctgatttcatttccagtggt 133 ||||| |||| || ||| ||||||||||| || || |||||||| || | ||| | || Sbjct: 109457 ctctggtgtataagatctccatgaataaccaccaaatcacctgactttacttctaagggc 109516 Query: 134 acaaactctttctgatcataaagcggggagggacgatcaaaatgagtgccattttcatcc 193 ||||| |||||| ||||||| || || ||| ||||||||||||| | ||||||| Sbjct: 109517 acaaattctttcagatcataggttggcgaaggatgatcaaaatgagtatcgatttcatct 109576 Query: 194 ctgatcattcgccttttca 212 ||||||||||||||||||| Sbjct: 109577 ctgatcattcgccttttca 109595 Score = 56.0 bits (28), Expect = 7e-05 Identities = 40/44 (90%) Strand = Plus / Plus Query: 20 tcaactacatgcaagctcagtgcatgtcttgagactggagaaag 63 |||| |||||| |||||||||||||||||||| || |||||||| Sbjct: 109321 tcaattacatgtaagctcagtgcatgtcttgacaccggagaaag 109364
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 81.8 bits (41), Expect = 1e-12 Identities = 70/80 (87%) Strand = Plus / Plus Query: 219 ttttatgtgatccgggaattgcccataggcaaccattggttgntgttgcatcttcaagcg 278 ||||||||||||| ||||||||||| ||||||||||| ||| ||| |||||||| || | Sbjct: 28349878 ttttatgtgatccaggaattgcccaaaggcaaccattcgtttttgtcgcatcttcgagtg 28349937 Query: 279 caagccacaatcctgtgcac 298 ||||||||| ||||||||| Sbjct: 28349938 caagccacagccctgtgcac 28349957 Score = 56.0 bits (28), Expect = 7e-05 Identities = 111/139 (79%) Strand = Plus / Plus Query: 74 ctctgatgtacaanatcaccatgaataacaacaaagtcacctgatttcatttccagtggt 133 ||||| |||| || ||| ||||||||||| || || |||||||| || | ||| | || Sbjct: 28349640 ctctggtgtataagatctccatgaataaccaccaaatcacctgactttacttctaagggc 28349699 Query: 134 acaaactctttctgatcataaagcggggagggacgatcaaaatgagtgccattttcatcc 193 ||||| |||||| ||||||| || || ||| ||||||||||||| | ||||||| Sbjct: 28349700 acaaattctttcagatcataggttggcgaaggatgatcaaaatgagtatcgatttcatct 28349759 Query: 194 ctgatcattcgccttttca 212 ||||||||||||||||||| Sbjct: 28349760 ctgatcattcgccttttca 28349778 Score = 56.0 bits (28), Expect = 7e-05 Identities = 40/44 (90%) Strand = Plus / Plus Query: 20 tcaactacatgcaagctcagtgcatgtcttgagactggagaaag 63 |||| |||||| |||||||||||||||||||| || |||||||| Sbjct: 28349504 tcaattacatgtaagctcagtgcatgtcttgacaccggagaaag 28349547
>ref|NM_126210.2| Arabidopsis thaliana phytanoyl-CoA dioxygenase AT2G01490 mRNA, complete cds Length = 1136 Score = 48.1 bits (24), Expect = 0.016 Identities = 39/44 (88%) Strand = Plus / Minus Query: 212 aaaccatttttatgtgatccgggaattgcccataggcaaccatt 255 |||||||| ||||| ||||| ||||||||||| || |||||||| Sbjct: 645 aaaccattcttatgagatccaggaattgcccaaagacaaccatt 602
>gb|AY116965.1| Arabidopsis thaliana At2g01490/F2I9.11 mRNA, complete cds Length = 852 Score = 48.1 bits (24), Expect = 0.016 Identities = 39/44 (88%) Strand = Plus / Minus Query: 212 aaaccatttttatgtgatccgggaattgcccataggcaaccatt 255 |||||||| ||||| ||||| ||||||||||| || |||||||| Sbjct: 581 aaaccattcttatgagatccaggaattgcccaaagacaaccatt 538
>gb|AY057710.1| Arabidopsis thaliana At2g01490/F2I9.11 mRNA, complete cds Length = 1029 Score = 48.1 bits (24), Expect = 0.016 Identities = 39/44 (88%) Strand = Plus / Minus Query: 212 aaaccatttttatgtgatccgggaattgcccataggcaaccatt 255 |||||||| ||||| ||||| ||||||||||| || |||||||| Sbjct: 601 aaaccattcttatgagatccaggaattgcccaaagacaaccatt 558
>gb|AY088080.1| Arabidopsis thaliana clone 41002 mRNA, complete sequence Length = 1131 Score = 48.1 bits (24), Expect = 0.016 Identities = 39/44 (88%) Strand = Plus / Minus Query: 212 aaaccatttttatgtgatccgggaattgcccataggcaaccatt 255 |||||||| ||||| ||||| ||||||||||| || |||||||| Sbjct: 645 aaaccattcttatgagatccaggaattgcccaaagacaaccatt 602
>emb|AL031650.22|HS1018D12 Human DNA sequence from clone RP5-1018D12 on chromosome 20q11.1-11.22 Contains part of a CDK5 regulatory subunit associated protein 3 (CDK5RAP3) pseudogene, the RPL31P3 gene for ribosomal protein L31 pseudogene 3, a novel pseudogene, the DEFB118 gene for defensin beta 118 and the 3' end of the the DEFB119 gene for defensin beta 119, complete sequence Length = 98490 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 174 aatgagtgccattttcatccc 194 ||||||||||||||||||||| Sbjct: 1187 aatgagtgccattttcatccc 1167
>gb|AC073533.19| Homo sapiens X BAC RP11-589J20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 182056 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Plus Query: 98 ataacaacaaagtcacctgat 118 ||||||||||||||||||||| Sbjct: 16258 ataacaacaaagtcacctgat 16278
>emb|AL445430.15| Human DNA sequence from clone RP11-716O23 on chromosome 6 Contains one or two novel genes, a repressor of protein-kinase (interferon-inducible double stranded RNA dependent inhibitor) (P58 repressor) (PRKRIR) pseudogene and a CpG island, complete sequence Length = 127862 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 tcttgagactggagaaaggt 65 |||||||||||||||||||| Sbjct: 104378 tcttgagactggagaaaggt 104359
>emb|AL445066.1|TACID4 Thermoplasma acidophilum complete genome; segment 4/5 Length = 297750 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 gccattttcatccctgatca 200 |||||||||||||||||||| Sbjct: 65957 gccattttcatccctgatca 65938
>gb|AC146630.25| Medicago truncatula clone mth2-7f22, complete sequence Length = 124189 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 aactctttctgatcataaag 156 |||||||||||||||||||| Sbjct: 68260 aactctttctgatcataaag 68241
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 ctctttctgatcataaagcg 158 |||||||||||||||||||| Sbjct: 24356809 ctctttctgatcataaagcg 24356828
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 caaaccatttttatgtgatc 230 |||||||||||||||||||| Sbjct: 27367568 caaaccatttttatgtgatc 27367587
>gb|AC138123.2| Homo sapiens 12 BAC RP11-202G11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 107706 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 ccagtggtacaaactctttc 145 |||||||||||||||||||| Sbjct: 68467 ccagtggtacaaactctttc 68486
>dbj|AP004163.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1323_A06 Length = 95665 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 caaaccatttttatgtgatc 230 |||||||||||||||||||| Sbjct: 69095 caaaccatttttatgtgatc 69114
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 ctctttctgatcataaagcg 158 |||||||||||||||||||| Sbjct: 24285015 ctctttctgatcataaagcg 24285034
>emb|AL772423.4|CNS08CA1 Oryza sativa chromosome 12, . BAC OJ1058_H10 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 103803 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 ctctttctgatcataaagcg 158 |||||||||||||||||||| Sbjct: 20341 ctctttctgatcataaagcg 20360
>emb|AL772427.4|CNS08CA5 Oryza sativa chromosome 12, . BAC OJ1260_B01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135793 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 ctctttctgatcataaagcg 158 |||||||||||||||||||| Sbjct: 133583 ctctttctgatcataaagcg 133602 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,463,176 Number of Sequences: 3902068 Number of extensions: 2463176 Number of successful extensions: 43756 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43617 Number of HSP's gapped (non-prelim): 128 length of query: 298 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 276 effective length of database: 17,147,199,772 effective search space: 4732627137072 effective search space used: 4732627137072 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)