ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15n10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK064856.1| Oryza sativa (japonica cultivar-group) cDNA clon... 230 2e-57
2ref|XM_469483.1| Oryza sativa (japonica cultivar-group), mRNA 184 1e-43
3dbj|AK104750.1| Oryza sativa (japonica cultivar-group) cDNA clon... 184 1e-43
4dbj|AK060138.1| Oryza sativa (japonica cultivar-group) cDNA clon... 184 1e-43
5dbj|AK103821.1| Oryza sativa (japonica cultivar-group) cDNA clon... 178 7e-42
6gb|AY112156.1| Zea mays CL1582_10 mRNA sequence 153 4e-34
7gb|AC135924.2| Oryza sativa (japonica cultivar-group) chromosome... 96 8e-17
8dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 96 8e-17
9gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 82 1e-12
10gb|AC087797.5| Oryza sativa chromosome 3 BAC OSJNBb0022E02 genom... 82 1e-12
11dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 82 1e-12
12ref|NM_126210.2| Arabidopsis thaliana phytanoyl-CoA dioxygenase ... 48 0.016
13gb|AY116965.1| Arabidopsis thaliana At2g01490/F2I9.11 mRNA, comp... 48 0.016
14gb|AY057710.1| Arabidopsis thaliana At2g01490/F2I9.11 mRNA, comp... 48 0.016
15gb|AY088080.1| Arabidopsis thaliana clone 41002 mRNA, complete s... 48 0.016
16emb|AL031650.22|HS1018D12 Human DNA sequence from clone RP5-1018... 42 0.99
17gb|AC073533.19| Homo sapiens X BAC RP11-589J20 (Roswell Park Can... 42 0.99
18emb|AL445430.15| Human DNA sequence from clone RP11-716O23 on ch... 40 3.9
19emb|AL445066.1|TACID4 Thermoplasma acidophilum complete genome; ... 40 3.9
20gb|AC146630.25| Medicago truncatula clone mth2-7f22, complete se... 40 3.9
21dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
22dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
23gb|AC138123.2| Homo sapiens 12 BAC RP11-202G11 (Roswell Park Can... 40 3.9
24dbj|AP004163.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
25gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.9
26emb|AL772423.4|CNS08CA1 Oryza sativa chromosome 12, . BAC OJ1058... 40 3.9
27emb|AL772427.4|CNS08CA5 Oryza sativa chromosome 12, . BAC OJ1260... 40 3.9

>dbj|AK064856.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000H11, full
            insert sequence
          Length = 1588

 Score =  230 bits (116), Expect = 2e-57
 Identities = 237/278 (85%)
 Strand = Plus / Minus

                                                                        
Query: 20   tcaactacatgcaagctcagtgcatgtcttgagactggagaaaggttctcgaagctctga 79
            |||| |||||| |||||||||||||||||||| ||  ||||||| || || |||||||| 
Sbjct: 1378 tcaattacatgtaagctcagtgcatgtcttgacaccagagaaagattttcaaagctctgg 1319

                                                                        
Query: 80   tgtacaanatcaccatgaataacaacaaagtcacctgatttcatttccagtggtacaaac 139
            ||||||| ||| ||||||||||| || || |||||||| || | ||| | ||| ||||| 
Sbjct: 1318 tgtacaagatctccatgaataaccaccaaatcacctgactttacttctaatggcacaaat 1259

                                                                        
Query: 140  tctttctgatcataaagcggggagggacgatcaaaatgagtgccattttcatccctgatc 199
            |||||| |||||||    || || ||| |||||||||||||  |||||||||| ||||||
Sbjct: 1258 tctttcagatcataggttggcgaaggatgatcaaaatgagtatcattttcatctctgatc 1199

                                                                        
Query: 200  attcgccttttcaaaccatttttatgtgatccgggaattgcccataggcaaccattggtt 259
            ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 1198 attcgccttttcagaccatttttatgtgatccaggaattgcccataggcaaccattcgtt 1139

                                                  
Query: 260  gntgttgcatcttcaagcgcaagccacaatcctgtgca 297
              ||| |||||||| || ||||||||||| ||||||||
Sbjct: 1138 tttgtcgcatcttcgagtgcaagccacaaccctgtgca 1101



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>ref|XM_469483.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1102

 Score =  184 bits (93), Expect = 1e-43
 Identities = 232/279 (83%)
 Strand = Plus / Minus

                                                                       
Query: 20  tcaactacatgcaagctcagtgcatgtcttgagactggagaaaggttctcgaagctctga 79
           |||| |||||| |||||||||||||||||||| || |||||||| || || |||||||| 
Sbjct: 822 tcaattacatgtaagctcagtgcatgtcttgacaccggagaaagattttcaaagctctgg 763

                                                                       
Query: 80  tgtacaanatcaccatgaataacaacaaagtcacctgatttcatttccagtggtacaaac 139
           |||| || ||| ||||||||||| || || |||||||| || | ||| |  || ||||| 
Sbjct: 762 tgtataagatctccatgaataaccaccaaatcacctgactttacttctaagggcacaaat 703

                                                                       
Query: 140 tctttctgatcataaagcggggagggacgatcaaaatgagtgccattttcatccctgatc 199
           |||||| |||||||    || || ||| |||||||||||||  |  ||||||| ||||||
Sbjct: 702 tctttcagatcataggttggcgaaggatgatcaaaatgagtatcgatttcatctctgatc 643

                                                                       
Query: 200 attcgccttttcaaaccatttttatgtgatccgggaattgcccataggcaaccattggtt 259
           |||||||||||||  ||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct: 642 attcgccttttcaggccatttttatgtgatccaggaattgcccaaaggcaaccattcgtt 583

                                                  
Query: 260 gntgttgcatcttcaagcgcaagccacaatcctgtgcac 298
             ||| |||||||| || ||||||||||  |||||||||
Sbjct: 582 tttgtcgcatcttcgagtgcaagccacagccctgtgcac 544



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>dbj|AK104750.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-F05, full
           insert sequence
          Length = 1089

 Score =  184 bits (93), Expect = 1e-43
 Identities = 232/279 (83%)
 Strand = Plus / Minus

                                                                       
Query: 20  tcaactacatgcaagctcagtgcatgtcttgagactggagaaaggttctcgaagctctga 79
           |||| |||||| |||||||||||||||||||| || |||||||| || || |||||||| 
Sbjct: 804 tcaattacatgtaagctcagtgcatgtcttgacaccggagaaagattttcaaagctctgg 745

                                                                       
Query: 80  tgtacaanatcaccatgaataacaacaaagtcacctgatttcatttccagtggtacaaac 139
           |||| || ||| ||||||||||| || || |||||||| || | ||| |  || ||||| 
Sbjct: 744 tgtataagatctccatgaataaccaccaaatcacctgactttacttctaagggcacaaat 685

                                                                       
Query: 140 tctttctgatcataaagcggggagggacgatcaaaatgagtgccattttcatccctgatc 199
           |||||| |||||||    || || ||| |||||||||||||  |  ||||||| ||||||
Sbjct: 684 tctttcagatcataggttggcgaaggatgatcaaaatgagtatcgatttcatctctgatc 625

                                                                       
Query: 200 attcgccttttcaaaccatttttatgtgatccgggaattgcccataggcaaccattggtt 259
           |||||||||||||  ||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct: 624 attcgccttttcaggccatttttatgtgatccaggaattgcccaaaggcaaccattcgtt 565

                                                  
Query: 260 gntgttgcatcttcaagcgcaagccacaatcctgtgcac 298
             ||| |||||||| || ||||||||||  |||||||||
Sbjct: 564 tttgtcgcatcttcgagtgcaagccacagccctgtgcac 526



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>dbj|AK060138.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-E10, full
           insert sequence
          Length = 1089

 Score =  184 bits (93), Expect = 1e-43
 Identities = 232/279 (83%)
 Strand = Plus / Minus

                                                                       
Query: 20  tcaactacatgcaagctcagtgcatgtcttgagactggagaaaggttctcgaagctctga 79
           |||| |||||| |||||||||||||||||||| || |||||||| || || |||||||| 
Sbjct: 804 tcaattacatgtaagctcagtgcatgtcttgacaccggagaaagattttcaaagctctgg 745

                                                                       
Query: 80  tgtacaanatcaccatgaataacaacaaagtcacctgatttcatttccagtggtacaaac 139
           |||| || ||| ||||||||||| || || |||||||| || | ||| |  || ||||| 
Sbjct: 744 tgtataagatctccatgaataaccaccaaatcacctgactttacttctaagggcacaaat 685

                                                                       
Query: 140 tctttctgatcataaagcggggagggacgatcaaaatgagtgccattttcatccctgatc 199
           |||||| |||||||    || || ||| |||||||||||||  |  ||||||| ||||||
Sbjct: 684 tctttcagatcataggttggcgaaggatgatcaaaatgagtatcgatttcatctctgatc 625

                                                                       
Query: 200 attcgccttttcaaaccatttttatgtgatccgggaattgcccataggcaaccattggtt 259
           |||||||||||||  ||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct: 624 attcgccttttcaggccatttttatgtgatccaggaattgcccaaaggcaaccattcgtt 565

                                                  
Query: 260 gntgttgcatcttcaagcgcaagccacaatcctgtgcac 298
             ||| |||||||| || ||||||||||  |||||||||
Sbjct: 564 tttgtcgcatcttcgagtgcaagccacagccctgtgcac 526



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>dbj|AK103821.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033147H12, full
           insert sequence
          Length = 1230

 Score =  178 bits (90), Expect = 7e-42
 Identities = 223/268 (83%)
 Strand = Plus / Minus

                                                                       
Query: 20  tcaactacatgcaagctcagtgcatgtcttgagactggagaaaggttctcgaagctctga 79
           |||| |||||| |||||||||||||||||||| || |||||||| || || |||||||| 
Sbjct: 835 tcaattacatgtaagctcagtgcatgtcttgacaccggagaaagattttcaaagctctgg 776

                                                                       
Query: 80  tgtacaanatcaccatgaataacaacaaagtcacctgatttcatttccagtggtacaaac 139
           |||| || ||| ||||||||||| || || |||||||| || | ||| |  || ||||| 
Sbjct: 775 tgtataagatctccatgaataaccaccaaatcacctgactttacttctaagggcacaaat 716

                                                                       
Query: 140 tctttctgatcataaagcggggagggacgatcaaaatgagtgccattttcatccctgatc 199
           |||||| |||||||    || || ||| |||||||||||||  |  ||||||| ||||||
Sbjct: 715 tctttcagatcataggttggcgaaggatgatcaaaatgagtatcgatttcatctctgatc 656

                                                                       
Query: 200 attcgccttttcaaaccatttttatgtgatccgggaattgcccataggcaaccattggtt 259
           |||||||||||||  ||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct: 655 attcgccttttcaggccatttttatgtgatccaggaattgcccaaaggcaaccattcgtt 596

                                       
Query: 260 gntgttgcatcttcaagcgcaagccaca 287
             ||| |||||||| || ||||||||||
Sbjct: 595 tttgtcgcatcttcgagtgcaagccaca 568



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>gb|AY112156.1| Zea mays CL1582_10 mRNA sequence
          Length = 891

 Score =  153 bits (77), Expect = 4e-34
 Identities = 240/297 (80%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatttacatccttncatgtcaactacatgcaagctcagtgcatgtcttgagactggaga 60
           ||||||||||||||   | || |||||||| ||||| | ||||||||||||  | |||||
Sbjct: 384 ccatttacatccttcagtatccactacatgtaagctgaatgcatgtcttgacgcaggaga 443

                                                                       
Query: 61  aaggttctcgaagctctgatgtacaanatcaccatgaataacaacaaagtcacctgattt 120
           ||| ||||| || |||||||||| || ||| ||||| ||||| || ||  |||| |||||
Sbjct: 444 aagattctcaaaactctgatgtataagatctccatggataaccaccaaagcaccagattt 503

                                                                       
Query: 121 catttccagtggtacaaactctttctgatcataaagcggggagggacgatcaaaatgagt 180
            | |||||| |||||||| |||||||| |||||    |||||||| | ||||||||| ||
Sbjct: 504 tacttccagcggtacaaattctttctggtcataggctggggaggggcaatcaaaatgtgt 563

                                                                       
Query: 181 gccattttcatccctgatcattcgccttttcaaaccatttttatgtgatccgggaattgc 240
            ||||||||||| |||||||| |||||   ||||||      |||||| || ||||| ||
Sbjct: 564 accattttcatctctgatcatacgcctcaccaaacccnnnnnatgtgagcctggaatggc 623

                                                                    
Query: 241 ccataggcaaccattggttgntgttgcatcttcaagcgcaagccacaatcctgtgca 297
           ||| |||||||||||| |   ||||||||||||||| ||||||||||| ||||||||
Sbjct: 624 ccacaggcaaccattgttgattgttgcatcttcaagtgcaagccacaaccctgtgca 680



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>gb|AC135924.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0486C01,
             complete sequence
          Length = 146432

 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 71/79 (89%)
 Strand = Plus / Plus

                                                                         
Query: 219   ttttatgtgatccgggaattgcccataggcaaccattggttgntgttgcatcttcaagcg 278
             ||||||||||||| ||||||||||||||||||||||| |||  ||| |||||||| || |
Sbjct: 61312 ttttatgtgatccaggaattgcccataggcaaccattcgtttttgtcgcatcttcgagtg 61371

                                
Query: 279   caagccacaatcctgtgca 297
             |||||||||| ||||||||
Sbjct: 61372 caagccacaaccctgtgca 61390



 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 120/145 (82%)
 Strand = Plus / Plus

                                                                         
Query: 74    ctctgatgtacaanatcaccatgaataacaacaaagtcacctgatttcatttccagtggt 133
             ||||| ||||||| ||| ||||||||||| || || |||||||| || | ||| | ||| 
Sbjct: 61074 ctctggtgtacaagatctccatgaataaccaccaaatcacctgactttacttctaatggc 61133

                                                                         
Query: 134   acaaactctttctgatcataaagcggggagggacgatcaaaatgagtgccattttcatcc 193
             ||||| |||||| |||||||    || || ||| |||||||||||||  |||||||||| 
Sbjct: 61134 acaaattctttcagatcataggttggcgaaggatgatcaaaatgagtatcattttcatct 61193

                                      
Query: 194   ctgatcattcgccttttcaaaccat 218
             ||||||||||||||||||| |||||
Sbjct: 61194 ctgatcattcgccttttcagaccat 61218



 Score = 48.1 bits (24), Expect = 0.016
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 20    tcaactacatgcaagctcagtgcatgtcttga 51
             |||| |||||| ||||||||||||||||||||
Sbjct: 60938 tcaattacatgtaagctcagtgcatgtcttga 60969



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 71/79 (89%)
 Strand = Plus / Plus

                                                                            
Query: 219      ttttatgtgatccgggaattgcccataggcaaccattggttgntgttgcatcttcaagcg 278
                ||||||||||||| ||||||||||||||||||||||| |||  ||| |||||||| || |
Sbjct: 23129537 ttttatgtgatccaggaattgcccataggcaaccattcgtttttgtcgcatcttcgagtg 23129596

                                   
Query: 279      caagccacaatcctgtgca 297
                |||||||||| ||||||||
Sbjct: 23129597 caagccacaaccctgtgca 23129615



 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 120/145 (82%)
 Strand = Plus / Plus

                                                                            
Query: 74       ctctgatgtacaanatcaccatgaataacaacaaagtcacctgatttcatttccagtggt 133
                ||||| ||||||| ||| ||||||||||| || || |||||||| || | ||| | ||| 
Sbjct: 23129299 ctctggtgtacaagatctccatgaataaccaccaaatcacctgactttacttctaatggc 23129358

                                                                            
Query: 134      acaaactctttctgatcataaagcggggagggacgatcaaaatgagtgccattttcatcc 193
                ||||| |||||| |||||||    || || ||| |||||||||||||  |||||||||| 
Sbjct: 23129359 acaaattctttcagatcataggttggcgaaggatgatcaaaatgagtatcattttcatct 23129418

                                         
Query: 194      ctgatcattcgccttttcaaaccat 218
                ||||||||||||||||||| |||||
Sbjct: 23129419 ctgatcattcgccttttcagaccat 23129443



 Score = 48.1 bits (24), Expect = 0.016
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                                
Query: 20       tcaactacatgcaagctcagtgcatgtcttga 51
                |||| |||||| ||||||||||||||||||||
Sbjct: 23129163 tcaattacatgtaagctcagtgcatgtcttga 23129194



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 70/80 (87%)
 Strand = Plus / Plus

                                                                            
Query: 219      ttttatgtgatccgggaattgcccataggcaaccattggttgntgttgcatcttcaagcg 278
                ||||||||||||| ||||||||||| ||||||||||| |||  ||| |||||||| || |
Sbjct: 28258554 ttttatgtgatccaggaattgcccaaaggcaaccattcgtttttgtcgcatcttcgagtg 28258613

                                    
Query: 279      caagccacaatcctgtgcac 298
                |||||||||  |||||||||
Sbjct: 28258614 caagccacagccctgtgcac 28258633



 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 111/139 (79%)
 Strand = Plus / Plus

                                                                            
Query: 74       ctctgatgtacaanatcaccatgaataacaacaaagtcacctgatttcatttccagtggt 133
                ||||| |||| || ||| ||||||||||| || || |||||||| || | ||| |  || 
Sbjct: 28258316 ctctggtgtataagatctccatgaataaccaccaaatcacctgactttacttctaagggc 28258375

                                                                            
Query: 134      acaaactctttctgatcataaagcggggagggacgatcaaaatgagtgccattttcatcc 193
                ||||| |||||| |||||||    || || ||| |||||||||||||  |  ||||||| 
Sbjct: 28258376 acaaattctttcagatcataggttggcgaaggatgatcaaaatgagtatcgatttcatct 28258435

                                   
Query: 194      ctgatcattcgccttttca 212
                |||||||||||||||||||
Sbjct: 28258436 ctgatcattcgccttttca 28258454



 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                            
Query: 20       tcaactacatgcaagctcagtgcatgtcttgagactggagaaag 63
                |||| |||||| |||||||||||||||||||| || ||||||||
Sbjct: 28258180 tcaattacatgtaagctcagtgcatgtcttgacaccggagaaag 28258223



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>gb|AC087797.5| Oryza sativa chromosome 3 BAC OSJNBb0022E02 genomic sequence, complete
              sequence
          Length = 122497

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 70/80 (87%)
 Strand = Plus / Plus

                                                                          
Query: 219    ttttatgtgatccgggaattgcccataggcaaccattggttgntgttgcatcttcaagcg 278
              ||||||||||||| ||||||||||| ||||||||||| |||  ||| |||||||| || |
Sbjct: 109695 ttttatgtgatccaggaattgcccaaaggcaaccattcgtttttgtcgcatcttcgagtg 109754

                                  
Query: 279    caagccacaatcctgtgcac 298
              |||||||||  |||||||||
Sbjct: 109755 caagccacagccctgtgcac 109774



 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 111/139 (79%)
 Strand = Plus / Plus

                                                                          
Query: 74     ctctgatgtacaanatcaccatgaataacaacaaagtcacctgatttcatttccagtggt 133
              ||||| |||| || ||| ||||||||||| || || |||||||| || | ||| |  || 
Sbjct: 109457 ctctggtgtataagatctccatgaataaccaccaaatcacctgactttacttctaagggc 109516

                                                                          
Query: 134    acaaactctttctgatcataaagcggggagggacgatcaaaatgagtgccattttcatcc 193
              ||||| |||||| |||||||    || || ||| |||||||||||||  |  ||||||| 
Sbjct: 109517 acaaattctttcagatcataggttggcgaaggatgatcaaaatgagtatcgatttcatct 109576

                                 
Query: 194    ctgatcattcgccttttca 212
              |||||||||||||||||||
Sbjct: 109577 ctgatcattcgccttttca 109595



 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                          
Query: 20     tcaactacatgcaagctcagtgcatgtcttgagactggagaaag 63
              |||| |||||| |||||||||||||||||||| || ||||||||
Sbjct: 109321 tcaattacatgtaagctcagtgcatgtcttgacaccggagaaag 109364



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 70/80 (87%)
 Strand = Plus / Plus

                                                                            
Query: 219      ttttatgtgatccgggaattgcccataggcaaccattggttgntgttgcatcttcaagcg 278
                ||||||||||||| ||||||||||| ||||||||||| |||  ||| |||||||| || |
Sbjct: 28349878 ttttatgtgatccaggaattgcccaaaggcaaccattcgtttttgtcgcatcttcgagtg 28349937

                                    
Query: 279      caagccacaatcctgtgcac 298
                |||||||||  |||||||||
Sbjct: 28349938 caagccacagccctgtgcac 28349957



 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 111/139 (79%)
 Strand = Plus / Plus

                                                                            
Query: 74       ctctgatgtacaanatcaccatgaataacaacaaagtcacctgatttcatttccagtggt 133
                ||||| |||| || ||| ||||||||||| || || |||||||| || | ||| |  || 
Sbjct: 28349640 ctctggtgtataagatctccatgaataaccaccaaatcacctgactttacttctaagggc 28349699

                                                                            
Query: 134      acaaactctttctgatcataaagcggggagggacgatcaaaatgagtgccattttcatcc 193
                ||||| |||||| |||||||    || || ||| |||||||||||||  |  ||||||| 
Sbjct: 28349700 acaaattctttcagatcataggttggcgaaggatgatcaaaatgagtatcgatttcatct 28349759

                                   
Query: 194      ctgatcattcgccttttca 212
                |||||||||||||||||||
Sbjct: 28349760 ctgatcattcgccttttca 28349778



 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                            
Query: 20       tcaactacatgcaagctcagtgcatgtcttgagactggagaaag 63
                |||| |||||| |||||||||||||||||||| || ||||||||
Sbjct: 28349504 tcaattacatgtaagctcagtgcatgtcttgacaccggagaaag 28349547



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>ref|NM_126210.2| Arabidopsis thaliana phytanoyl-CoA dioxygenase AT2G01490 mRNA,
           complete cds
          Length = 1136

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 212 aaaccatttttatgtgatccgggaattgcccataggcaaccatt 255
           |||||||| ||||| ||||| ||||||||||| || ||||||||
Sbjct: 645 aaaccattcttatgagatccaggaattgcccaaagacaaccatt 602



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>gb|AY116965.1| Arabidopsis thaliana At2g01490/F2I9.11 mRNA, complete cds
          Length = 852

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 212 aaaccatttttatgtgatccgggaattgcccataggcaaccatt 255
           |||||||| ||||| ||||| ||||||||||| || ||||||||
Sbjct: 581 aaaccattcttatgagatccaggaattgcccaaagacaaccatt 538



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>gb|AY057710.1| Arabidopsis thaliana At2g01490/F2I9.11 mRNA, complete cds
          Length = 1029

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 212 aaaccatttttatgtgatccgggaattgcccataggcaaccatt 255
           |||||||| ||||| ||||| ||||||||||| || ||||||||
Sbjct: 601 aaaccattcttatgagatccaggaattgcccaaagacaaccatt 558



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>gb|AY088080.1| Arabidopsis thaliana clone 41002 mRNA, complete sequence
          Length = 1131

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 212 aaaccatttttatgtgatccgggaattgcccataggcaaccatt 255
           |||||||| ||||| ||||| ||||||||||| || ||||||||
Sbjct: 645 aaaccattcttatgagatccaggaattgcccaaagacaaccatt 602



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>emb|AL031650.22|HS1018D12 Human DNA sequence from clone RP5-1018D12 on chromosome 20q11.1-11.22
            Contains part of a CDK5 regulatory subunit associated
            protein 3 (CDK5RAP3) pseudogene, the RPL31P3 gene for
            ribosomal protein L31 pseudogene 3, a novel pseudogene,
            the DEFB118 gene for defensin beta 118 and the 3' end of
            the the DEFB119 gene for defensin beta 119, complete
            sequence
          Length = 98490

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 174  aatgagtgccattttcatccc 194
            |||||||||||||||||||||
Sbjct: 1187 aatgagtgccattttcatccc 1167



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>gb|AC073533.19| Homo sapiens X BAC RP11-589J20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 182056

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 98    ataacaacaaagtcacctgat 118
             |||||||||||||||||||||
Sbjct: 16258 ataacaacaaagtcacctgat 16278



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>emb|AL445430.15| Human DNA sequence from clone RP11-716O23 on chromosome 6 Contains one or
              two novel genes, a repressor of protein-kinase
              (interferon-inducible double stranded RNA dependent
              inhibitor) (P58 repressor) (PRKRIR) pseudogene and a CpG
              island, complete sequence
          Length = 127862

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 46     tcttgagactggagaaaggt 65
              ||||||||||||||||||||
Sbjct: 104378 tcttgagactggagaaaggt 104359



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>emb|AL445066.1|TACID4 Thermoplasma acidophilum complete genome; segment 4/5
          Length = 297750

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   gccattttcatccctgatca 200
             ||||||||||||||||||||
Sbjct: 65957 gccattttcatccctgatca 65938



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>gb|AC146630.25| Medicago truncatula clone mth2-7f22, complete sequence
          Length = 124189

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   aactctttctgatcataaag 156
             ||||||||||||||||||||
Sbjct: 68260 aactctttctgatcataaag 68241



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 139      ctctttctgatcataaagcg 158
                ||||||||||||||||||||
Sbjct: 24356809 ctctttctgatcataaagcg 24356828



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 211      caaaccatttttatgtgatc 230
                ||||||||||||||||||||
Sbjct: 27367568 caaaccatttttatgtgatc 27367587



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>gb|AC138123.2| Homo sapiens 12 BAC RP11-202G11 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 107706

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   ccagtggtacaaactctttc 145
             ||||||||||||||||||||
Sbjct: 68467 ccagtggtacaaactctttc 68486



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>dbj|AP004163.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1323_A06
          Length = 95665

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 211   caaaccatttttatgtgatc 230
             ||||||||||||||||||||
Sbjct: 69095 caaaccatttttatgtgatc 69114



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 139      ctctttctgatcataaagcg 158
                ||||||||||||||||||||
Sbjct: 24285015 ctctttctgatcataaagcg 24285034



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>emb|AL772423.4|CNS08CA1 Oryza sativa chromosome 12, . BAC OJ1058_H10 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 103803

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 139   ctctttctgatcataaagcg 158
             ||||||||||||||||||||
Sbjct: 20341 ctctttctgatcataaagcg 20360



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>emb|AL772427.4|CNS08CA5 Oryza sativa chromosome 12, . BAC OJ1260_B01 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 135793

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 139    ctctttctgatcataaagcg 158
              ||||||||||||||||||||
Sbjct: 133583 ctctttctgatcataaagcg 133602


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,463,176
Number of Sequences: 3902068
Number of extensions: 2463176
Number of successful extensions: 43756
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43617
Number of HSP's gapped (non-prelim): 128
length of query: 298
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 276
effective length of database: 17,147,199,772
effective search space: 4732627137072
effective search space used: 4732627137072
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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