ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags16c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VSPA_SOYBN (P15490) Stem 28 kDa glycoprotein precursor (Vegetati... 127 3e-29
2VSPB_SOYBN (P10743) Stem 31 kDa glycoprotein precursor (Vegetati... 125 1e-28
3S25K_SOYBN (P10742) Stem 31 kDa glycoprotein precursor (Vegetati... 119 5e-27
4PPA1_LYCES (P27061) Acid phosphatase 1 precursor (EC 3.1.3.2) (A... 110 3e-24
5VSP1_ARATH (O49195) Vegetative storage protein 1 precursor 100 3e-21
6VSP2_ARATH (O82122) Vegetative storage protein 2 precursor 95 2e-19
7AAD6_YEAST (P43547) Putative aryl-alcohol dehydrogenase AAD6 (EC... 31 3.2
8SLT11_YEAST (P38241) Pre-mRNA-splicing factor SLT11 (Synthetic l... 30 7.2
9YIEC_ECOLI (P26218) Putative outer membrane protein yieC precursor 29 9.4
10NFASC_CHICK (O42414) Neurofascin precursor 29 9.4

>VSPA_SOYBN (P15490) Stem 28 kDa glycoprotein precursor (Vegetative storage|
           protein A)
          Length = 254

 Score =  127 bits (319), Expect = 3e-29
 Identities = 67/126 (53%), Positives = 88/126 (69%), Gaps = 3/126 (2%)
 Frame = -3

Query: 606 YNXTSFDAYVLKGSAPALPETKRLXYKLLKVGIKPVFITGRTEDKRAVTVGNLRSQGFSG 427
           +N T +D +V KG+APALPET +   KL+ +G K +F++GRT DK+AVT  NL+  G+  
Sbjct: 128 FNSTLYDEWVNKGNAPALPETLKNYNKLVSLGFKIIFLSGRTLDKQAVTEANLKKAGYHT 187

Query: 426 WMNLTLK--QHGFKGSAISYKSAERKKLQDAGYVIVGNIGDQWSDILGAPEG-ARTFKLP 256
           W  L LK  Q     +A+SYK+A R+KL   GY IVG IGDQWSD+LG   G +RTFKLP
Sbjct: 188 WEKLILKDPQDPSTPNAVSYKTAAREKLIRQGYNIVGIIGDQWSDLLGGHRGESRTFKLP 247

Query: 255 DPIYYI 238
           +P+YYI
Sbjct: 248 NPLYYI 253



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>VSPB_SOYBN (P10743) Stem 31 kDa glycoprotein precursor (Vegetative storage|
           protein B)
          Length = 254

 Score =  125 bits (314), Expect = 1e-28
 Identities = 69/125 (55%), Positives = 84/125 (67%), Gaps = 2/125 (1%)
 Frame = -3

Query: 606 YNXTSFDAYVLKGSAPALPETKRLXYKLLKVGIKPVFITGRTEDKRAVTVGNLRSQGFSG 427
           +N T +D +V KG APALPET +   KLL +G K VF++GR  DK AVT  NL+  GF  
Sbjct: 129 FNETLYDEWVNKGDAPALPETLKNYNKLLSLGFKIVFLSGRYLDKMAVTEANLKKAGFHT 188

Query: 426 WMNLTLKQ-HGFKGSAISYKSAERKKLQDAGYVIVGNIGDQWSDILGAPEG-ARTFKLPD 253
           W  L LK  H    +A+SYKSA R+ L   GY IVG IGDQWSD+LG   G +RTFKLP+
Sbjct: 189 WEQLILKDPHLITPNALSYKSAMRENLLRQGYRIVGIIGDQWSDLLGDHRGESRTFKLPN 248

Query: 252 PIYYI 238
           P+YYI
Sbjct: 249 PMYYI 253



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>S25K_SOYBN (P10742) Stem 31 kDa glycoprotein precursor (Vegetative storage|
           protein VSP25) (Fragment)
          Length = 291

 Score =  119 bits (299), Expect = 5e-27
 Identities = 64/122 (52%), Positives = 84/122 (68%), Gaps = 3/122 (2%)
 Frame = -3

Query: 606 YNXTSFDAYVLKGSAPALPETKRLXYKLLKVGIKPVFITGRTEDKRAVTVGNLRSQGFSG 427
           +N T +D +V KG+APALPET +   KL+ +G K +F++GRT DK+AVT  NL+  G+  
Sbjct: 125 FNSTLYDEWVNKGNAPALPETLKNYNKLVSLGFKIIFLSGRTLDKQAVTEANLKKAGYHT 184

Query: 426 WMNLTLK--QHGFKGSAISYKSAERKKLQDAGYVIVGNIGDQWSDILGAPEG-ARTFKLP 256
           W  L LK  Q     +A+SYK+A R+KL   GY IVG IGDQWSD+LG   G +RTFKLP
Sbjct: 185 WEKLILKDPQDPSTPNAVSYKTAAREKLIRQGYNIVGIIGDQWSDLLGGHRGESRTFKLP 244

Query: 255 DP 250
           +P
Sbjct: 245 NP 246



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>PPA1_LYCES (P27061) Acid phosphatase 1 precursor (EC 3.1.3.2) (Apase-1(1))|
          Length = 255

 Score =  110 bits (275), Expect = 3e-24
 Identities = 56/124 (45%), Positives = 80/124 (64%), Gaps = 1/124 (0%)
 Frame = -3

Query: 606 YNXTSFDAYVLKGSAPALPETKRLXYKLLKVGIKPVFITGRTEDKRAVTVGNLRSQGFSG 427
           ++   FD +V  G+APAL  + +L  ++LK+G K   +TGR+E  R+VTV NL + GF  
Sbjct: 131 FDDVEFDKWVENGTAPALGSSLKLYQEVLKLGFKVFLLTGRSERHRSVTVENLMNAGFHD 190

Query: 426 WMNLTLKQHGFKG-SAISYKSAERKKLQDAGYVIVGNIGDQWSDILGAPEGARTFKLPDP 250
           W  L L+     G +A +YKS  R  + + G+ IVGN GDQWSD+LG+    R+FKLP+P
Sbjct: 191 WHKLILRGSDDHGKTATTYKSERRNAMVEEGFRIVGNSGDQWSDLLGSSMSYRSFKLPNP 250

Query: 249 IYYI 238
           +YYI
Sbjct: 251 MYYI 254



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>VSP1_ARATH (O49195) Vegetative storage protein 1 precursor|
          Length = 270

 Score =  100 bits (250), Expect = 3e-21
 Identities = 50/110 (45%), Positives = 71/110 (64%)
 Frame = -3

Query: 567 SAPALPETKRLXYKLLKVGIKPVFITGRTEDKRAVTVGNLRSQGFSGWMNLTLKQHGFKG 388
           S P LPET  L   LL++GI+P+ I+ R +    +T+ NL++ G + W +L LK +G K 
Sbjct: 160 STPGLPETLHLYENLLELGIEPIIISDRWKKLSEITIENLKAVGVTKWKHLILKPNGSKL 219

Query: 387 SAISYKSAERKKLQDAGYVIVGNIGDQWSDILGAPEGARTFKLPDPIYYI 238
           + + YKS  R  L   GY IVGNIGDQW+D++    G R FKLP+P+YY+
Sbjct: 220 TQVVYKSKVRNSLVKKGYNIVGNIGDQWADLVEDTPG-RVFKLPNPLYYV 268



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>VSP2_ARATH (O82122) Vegetative storage protein 2 precursor|
          Length = 265

 Score = 94.7 bits (234), Expect = 2e-19
 Identities = 47/110 (42%), Positives = 69/110 (62%)
 Frame = -3

Query: 567 SAPALPETKRLXYKLLKVGIKPVFITGRTEDKRAVTVGNLRSQGFSGWMNLTLKQHGFKG 388
           S P LPE   L   ++++GI+P+ ++ R +  + VT+ NL + G + W +L LK +G   
Sbjct: 155 STPGLPEALHLYQNIIELGIEPIILSDRWKLWKNVTLDNLEAAGVTYWKHLILKPNGSNL 214

Query: 387 SAISYKSAERKKLQDAGYVIVGNIGDQWSDILGAPEGARTFKLPDPIYYI 238
             + YKS  RK L   GY IVGNIGDQW+D++    G R FKLP+P+YY+
Sbjct: 215 RQVVYKSKVRKSLVKKGYNIVGNIGDQWADLVEDTPG-RVFKLPNPLYYV 263



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>AAD6_YEAST (P43547) Putative aryl-alcohol dehydrogenase AAD6 (EC 1.1.1.-)|
          Length = 212

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 321 NIGDQWSDILGAPEGARTFKLPDPIY 244
           +IGD WS+ILG+    R F+L D  Y
Sbjct: 38  SIGDAWSEILGSMSKERAFELLDAFY 63



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>SLT11_YEAST (P38241) Pre-mRNA-splicing factor SLT11 (Synthetic lethality with|
           U2 protein 11) (Extracellular matrix protein 2)
          Length = 364

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 106 QWIITDASSMQITITPWSIKRAWSLIIIRGARAWGNQMAAADLGD 240
           +W ITD  S  + I  W    + SLI+   A+  G +  +++LG+
Sbjct: 216 EWKITDTVSQLLGIKKWKDGNSLSLIVNHKAKCGGLRFQSSELGE 260



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>YIEC_ECOLI (P26218) Putative outer membrane protein yieC precursor|
          Length = 538

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -3

Query: 459 VGNLRSQG--FSGWMNLTLKQHGFKGSAISYKSAERKKLQDAGYVIVGNIGDQWS 301
           +G+L   G  +SGW +L LKQ  +          E  K  DA  ++ GN+G Q+S
Sbjct: 148 IGSLGRFGNEYSGWFDLQLKQRVYN---------ENGKRVDAVVMMDGNVGQQYS 193



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>NFASC_CHICK (O42414) Neurofascin precursor|
          Length = 1369

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 19  MQQVNNSLPGLPKEKQQHSGLSSR-QKNKTQWIITDASSMQITITPWSIKRAW 174
           +  V +SLP +P E+ Q SG          Q   T  ++M+IT TP +  +A+
Sbjct: 720 VNDVGSSLPSMPSERYQTSGARPEINPTGVQGAGTQKNNMEITWTPLNATQAY 772


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,049,860
Number of Sequences: 219361
Number of extensions: 1413412
Number of successful extensions: 4526
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4517
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5424720305
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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