ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags16c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC010342.5|AC010342 Homo sapiens chromosome 5 clone CTD-2015B... 42 0.27
2gb|AC161399.2| Medicago truncatula chromosome 2 BAC clone mte1-3... 38 4.1
3emb|AL731614.4|OSJN00260 Oryza sativa genomic DNA, chromosome 4,... 38 4.1
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.1
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.1
6gb|AC092839.4| Homo sapiens BAC clone RP11-257N16 from 2, comple... 38 4.1
7gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 4.1
8emb|AL731761.3|CNS07YPV Oryza sativa chromosome 12, . BAC OJ1119... 38 4.1

>gb|AC010342.5|AC010342 Homo sapiens chromosome 5 clone CTD-2015B23, complete sequence
          Length = 126010

 Score = 42.1 bits (21), Expect = 0.27
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 27    caaactaccttattacaaata 47
             |||||||||||||||||||||
Sbjct: 45639 caaactaccttattacaaata 45659



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>gb|AC161399.2| Medicago truncatula chromosome 2 BAC clone mte1-30k4, complete sequence
          Length = 172016

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 28    aaactaccttattacaaat 46
             |||||||||||||||||||
Sbjct: 56708 aaactaccttattacaaat 56726



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>emb|AL731614.4|OSJN00260 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079F16,
              complete sequence
          Length = 157801

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 33     accttattacaaatacaat 51
              |||||||||||||||||||
Sbjct: 105141 accttattacaaatacaat 105123



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 33       accttattacaaatacaat 51
                |||||||||||||||||||
Sbjct: 11936546 accttattacaaatacaat 11936528



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 33      accttattacaaatacaat 51
               |||||||||||||||||||
Sbjct: 3602998 accttattacaaatacaat 3603016



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>gb|AC092839.4| Homo sapiens BAC clone RP11-257N16 from 2, complete sequence
          Length = 186464

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 27    caaactaccttattacaaa 45
             |||||||||||||||||||
Sbjct: 64792 caaactaccttattacaaa 64810



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 33      accttattacaaatacaat 51
               |||||||||||||||||||
Sbjct: 3602943 accttattacaaatacaat 3602961



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>emb|AL731761.3|CNS07YPV Oryza sativa chromosome 12, . BAC OJ1119_B11 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 122128

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 33    accttattacaaatacaat 51
             |||||||||||||||||||
Sbjct: 86430 accttattacaaatacaat 86412


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 439,668
Number of Sequences: 3902068
Number of extensions: 439668
Number of successful extensions: 25434
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25405
Number of HSP's gapped (non-prelim): 29
length of query: 95
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 74
effective length of database: 17,151,101,840
effective search space: 1269181536160
effective search space used: 1269181536160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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