ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags16c01 |
|---|---|
| Clone Library Name | barley_pub |
>ARFK_ARATH (Q9ZPY6) Auxin response factor 11| Length = 601 Score = 33.1 bits (74), Expect = 0.36 Identities = 21/62 (33%), Positives = 32/62 (51%) Frame = -3 Query: 425 NGGLGKEITETVEKVFCRLSGIDMMPPPASTSGAPQEKQTNMAVEEGQKDMEMDASEPSS 246 + GL +ITE CRL G D+ PAS + P +KQ ++V+ D +P+S Sbjct: 419 SSGLQCKITEAPVTSSCRLFGFDLTSKPASAT-IPHDKQL-ISVDSNISDSTTKCQDPNS 476 Query: 245 SS 240 S+ Sbjct: 477 SN 478
>TALA_POVMC (P12905) Large T antigen| Length = 777 Score = 32.3 bits (72), Expect = 0.62 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 1/62 (1%) Frame = -3 Query: 347 PPASTSGAPQEKQTNMAVEEGQKDMEMDASE-PSSSSRKRPFSDINVKGAGAIPNGGATY 171 PP T P ++ N V E + D P S R RP G G NGG+ + Sbjct: 151 PPTDTPAHPAGRRRNPCVAEPDDSISPDPPRTPVSRKRPRPAGATGGGGGGVHANGGSVF 210 Query: 170 QH 165 H Sbjct: 211 GH 212
>DBF2_YEAST (P22204) Cell cycle protein kinase DBF2 (EC 2.7.11.1)| Length = 572 Score = 32.0 bits (71), Expect = 0.80 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Frame = -3 Query: 422 GGLGKEITETVEKVFCRLSGIDMMPPPASTSGAPQEKQTNMAVEE-GQKDMEMDASEPSS 246 GG G + + K R +GI+ P P S P E +NM ++E Q DM++ S+ Sbjct: 28 GGTGLFPNQNITKRRTRPAGINDSPSPVKPSFFPYEDTSNMDIDEVSQPDMDV-----SN 82 Query: 245 SSRKRP 228 S +K P Sbjct: 83 SPKKLP 88
>PSAB_YERPS (P69966) Chaperone protein psaB precursor| Length = 273 Score = 30.4 bits (67), Expect = 2.3 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = -3 Query: 461 KASKAVWELILDNGGLGKEITETVE 387 KA++ W++I DNGG+ +E TV+ Sbjct: 249 KATEVFWQVINDNGGVSREFKSTVQ 273
>PSAB_YERPE (P69965) Chaperone protein psaB precursor| Length = 273 Score = 30.4 bits (67), Expect = 2.3 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = -3 Query: 461 KASKAVWELILDNGGLGKEITETVE 387 KA++ W++I DNGG+ +E TV+ Sbjct: 249 KATEVFWQVINDNGGVSREFKSTVQ 273
>SYNG_MOUSE (Q5SV85) AP1 gamma subunit-binding protein 1 (Gamma-synergin)| Length = 1306 Score = 30.0 bits (66), Expect = 3.1 Identities = 15/42 (35%), Positives = 23/42 (54%) Frame = -3 Query: 347 PPASTSGAPQEKQTNMAVEEGQKDMEMDASEPSSSSRKRPFS 222 P A SGA Q+ QT + +D++M +S S ++ PFS Sbjct: 587 PSAFASGAAQQTQTQVKTPLNLEDLDMFSSVDCSGEKQVPFS 628
>GGA3_MOUSE (Q8BMI3) ADP-ribosylation factor-binding protein GGA3| (Golgi-localized, gamma ear-containing, ARF-binding protein 3) Length = 718 Score = 30.0 bits (66), Expect = 3.1 Identities = 11/24 (45%), Positives = 17/24 (70%) Frame = -3 Query: 368 SGIDMMPPPASTSGAPQEKQTNMA 297 SGI ++PPP TSG P+ + ++ A Sbjct: 347 SGIPILPPPPQTSGPPRSRSSSQA 370
>LGE1_ASHGO (Q75A59) Transcriptional regulatory protein LGE1| Length = 244 Score = 30.0 bits (66), Expect = 3.1 Identities = 17/63 (26%), Positives = 27/63 (42%) Frame = -3 Query: 347 PPASTSGAPQEKQTNMAVEEGQKDMEMDASEPSSSSRKRPFSDINVKGAGAIPNGGATYQ 168 PP+S G+ + N A Q + A S+ ++P+ +G+G GG Y Sbjct: 32 PPSSQGGSARAAPLNGAFHSHQPHSQGYARAEGSNGYRQPYGRGGYRGSGGRYYGGYGYG 91 Query: 167 HDG 159 H G Sbjct: 92 HGG 94
>ALG10_YARLI (Q6CEA5) Alpha-1,2 glucosyltransferase ALG10 (EC 2.4.1.-)| (Alpha-2-glucosyltransferase ALG10) (Dolichyl-phosphoglucose-dependent glucosyltransferase ALG10) (Asparagine-linked glycosylation protein 10) Length = 522 Score = 29.6 bits (65), Expect = 4.0 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = +3 Query: 18 PYIVELYHYPRTQQFL-GHENTTANLPCNNKITT 116 PYI E++H P+TQQ+ GH N ++KITT Sbjct: 38 PYIDEIFHIPQTQQYCKGHWNA-----WDSKITT 66
>DPOG1_CHICK (Q92076) DNA polymerase gamma subunit 1 (EC 2.7.7.7) (Mitochondrial| DNA polymerase catalytic subunit) (Fragment) Length = 647 Score = 29.3 bits (64), Expect = 5.2 Identities = 11/37 (29%), Positives = 23/37 (62%) Frame = -3 Query: 314 KQTNMAVEEGQKDMEMDASEPSSSSRKRPFSDINVKG 204 +Q+ M E+G ++ ++S+PS P++D+N+ G Sbjct: 122 EQSQMQDEDGLPELVEESSQPSFHHGNGPYNDVNIPG 158
>BAG7_YEAST (Q12128) Rho-GTPase-activating protein BAG7| Length = 409 Score = 29.3 bits (64), Expect = 5.2 Identities = 10/31 (32%), Positives = 22/31 (70%) Frame = -3 Query: 362 IDMMPPPASTSGAPQEKQTNMAVEEGQKDME 270 ++++ P+S G+PQ + ++M+ EG+KD + Sbjct: 4 MNLLSTPSSEEGSPQNRSSSMSSVEGKKDRD 34
>LRFN2_MACFA (Q9BE71) Leucine-rich repeat and fibronectin type-III| domain-containing protein 2 precursor Length = 789 Score = 29.3 bits (64), Expect = 5.2 Identities = 16/73 (21%), Positives = 27/73 (36%) Frame = -3 Query: 407 EITETVEKVFCRLSGIDMMPPPASTSGAPQEKQTNMAVEEGQKDMEMDASEPSSSSRKRP 228 ++ V V+ + +G PP ++ +GAP + + V D + S SS Sbjct: 567 KMAAAVSNVYSQTNGAQPPPPSSAPAGAPPQGPPKVVVRNELLDFTASLARASDSSSSSS 626 Query: 227 FSDINVKGAGAIP 189 G G P Sbjct: 627 LGSGEAAGLGRAP 639
>LRFN2_HUMAN (Q9ULH4) Leucine-rich repeat and fibronectin type-III| domain-containing protein 2 precursor Length = 789 Score = 29.3 bits (64), Expect = 5.2 Identities = 16/73 (21%), Positives = 27/73 (36%) Frame = -3 Query: 407 EITETVEKVFCRLSGIDMMPPPASTSGAPQEKQTNMAVEEGQKDMEMDASEPSSSSRKRP 228 ++ V V+ + +G PP ++ +GAP + + V D + S SS Sbjct: 567 KMAAAVSNVYSQTNGAQPPPPSSAPAGAPPQGPPKVVVRNELLDFTASLARASDSSSSSS 626 Query: 227 FSDINVKGAGAIP 189 G G P Sbjct: 627 LGSGEAAGLGRAP 639
>MARK3_HUMAN (P27448) MAP/microtubule affinity-regulating kinase 3 (EC 2.7.11.1)| (Cdc25C-associated protein kinase 1) (cTAK1) (C-TAK1) (Serine/threonine protein kinase p78) (Ser/Thr protein kinase PAR-1) (Protein kinase STK10) Length = 776 Score = 29.3 bits (64), Expect = 5.2 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 13/63 (20%) Frame = -3 Query: 362 IDMMPPPASTSGAPQEKQTNMAVEE--------GQKDMEMDASEPSSSS-----RKRPFS 222 ID+M + QE + M +E G+K E+DAS+ SSSS + RP S Sbjct: 355 IDIMVGMGYSQEEIQESLSKMKYDEITATYLLLGRKSSELDASDSSSSSNLSLAKVRPSS 414 Query: 221 DIN 213 D+N Sbjct: 415 DLN 417
>SYNG_RAT (Q9JKC9) AP1 gamma subunit-binding protein 1 (Gamma-synergin)| (Fragment) Length = 700 Score = 29.3 bits (64), Expect = 5.2 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 4/69 (5%) Frame = -3 Query: 380 FCRLSGIDMMPPPASTSGAPQE----KQTNMAVEEGQKDMEMDASEPSSSSRKRPFSDIN 213 F + P PA ++ AP K +++A + G+ ++ + S P+S + F+D Sbjct: 552 FSTSKSVSSRPQPAGSAAAPASLASTKASSLADDFGEFNLFGEYSNPASVGEQDDFADFM 611 Query: 212 VKGAGAIPN 186 G +IP+ Sbjct: 612 AFGNSSIPS 620 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = -3 Query: 347 PPASTSGAPQEKQTNMAVEEGQKDMEMDASEPSSSSRKRPFS 222 P A SGA Q+ QT + D++M +S S + PFS Sbjct: 508 PSAFASGAAQQTQTQVKTPLNLADLDMFSSVDCSGEKPVPFS 549
>Y5500_RHOBA (Q7URR4) UPF0082 protein RB5500| Length = 246 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Frame = -3 Query: 329 GAPQEKQTNMAVEEGQKDMEMDA-SEPSSSSRKRPFSDINV 210 GA +EK T +A+E G D+E+D + + FSD+ V Sbjct: 145 GADEEKVTELALENGADDVEVDEDGKVQVTCSPEAFSDLEV 185
>OR4C5_HUMAN (Q8NGB2) Olfactory receptor 4C5 (Olfactory receptor OR11-99)| Length = 326 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%) Frame = +3 Query: 108 ITTNGRTSPALLVPILMT--VMLVCSATVRYSTCSFHIDV 221 + N L+ IL+T V+++CS STC+FHI V Sbjct: 220 VAANSGLMCMLIFSILITSYVLILCSQRKALSTCAFHITV 259 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,374,331 Number of Sequences: 219361 Number of extensions: 1412773 Number of successful extensions: 4981 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 4768 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4979 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
