ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15n01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1JI23_HORVU (P32024) 23 kDa jasmonate-induced protein 256 6e-74
2JIPH_ATRCA (P42764) Jasmonate-induced protein homolog 47 5e-05
3JHD1B_XENLA (Q640I9) JmjC domain-containing histone demethylatio... 32 2.1
4IL4RA_HORSE (Q6WG24) Interleukin-4 receptor alpha chain precurso... 31 2.8
5YP158_YEAST (Q99299) Protein YPL158C 31 3.6
6DYHA_CHLRE (Q39610) Dynein alpha chain, flagellar outer arm (DHC... 30 6.2
7CARA_ACIAD (Q6F8M7) Carbamoyl-phosphate synthase small chain (EC... 30 6.2

>JI23_HORVU (P32024) 23 kDa jasmonate-induced protein|
          Length = 210

 Score =  256 bits (653), Expect(2) = 6e-74
 Identities = 116/170 (68%), Positives = 138/170 (81%), Gaps = 2/170 (1%)
 Frame = -2

Query: 609 GARILTHKQFVDNLKIKYGNGISVKCLIYNATGTNLSFVTYKNWIGSIFDTPYPSDIQNG 430
           G + +  ++FVDNLK +YGNGI+VKCL+YNATG  L+F  Y +W G I+DTPYPSDIQNG
Sbjct: 41  GGKDVNAQKFVDNLKERYGNGIAVKCLLYNATGATLNFAKYNDWHGHIYDTPYPSDIQNG 100

Query: 429 QWGAFLHVKPRAAAKGSTAAVVYRSRIPXXXXSCDWLFTWSVPFIGNNGVYTEIREQGHF 250
           QWGAFLHV P  AA GS  AVVYRS+IP    SCDWLF+W+VP+IG NGVYTEIRE+GH+
Sbjct: 101 QWGAFLHVHPSGAAAGSAGAVVYRSKIPSSSSSCDWLFSWTVPYIGGNGVYTEIREEGHY 160

Query: 249 PK--HWDYIYNVRLANSNLHSTDSNYGYVSRANIGEGTTMNARAVFQLPY 106
           P    WDYIYNV+L NS++ S DSNYGYVS+A+IGEGTTMNAR VF+ PY
Sbjct: 161 PSVGSWDYIYNVKLKNSSVTSIDSNYGYVSKADIGEGTTMNARGVFEFPY 210



 Score = 42.0 bits (97), Expect(2) = 6e-74
 Identities = 18/21 (85%), Positives = 20/21 (95%)
 Frame = -1

Query: 649 KDVADYTMKMINAGGKDIDAQ 587
           KDVADY MKMINAGGKD++AQ
Sbjct: 28  KDVADYAMKMINAGGKDVNAQ 48



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>JIPH_ATRCA (P42764) Jasmonate-induced protein homolog|
          Length = 185

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 45/150 (30%), Positives = 60/150 (40%), Gaps = 15/150 (10%)
 Frame = -2

Query: 588 KQFVDNLKIKYGN-GISVKCL------IYNATGTNLSFVTYKNWIGSIFDTPYPSDIQNG 430
           K+ VD +  K  N G++V+        + N T  +++F    NW GS+  T YP  I   
Sbjct: 14  KKSVDEMVEKATNMGVNVQAQNSAVVSMINQTNVSMTFNENHNWSGSVVGTGYPKSIPTK 73

Query: 429 QWGAFLHVKPRAAAKGSTAAVVYRSRIPXXXXSCDWLFTWSVPF----IGNNGVYTEIRE 262
           Q   F+H     A  GS  AVVY          C WL  W  P        N VY +   
Sbjct: 74  QSRQFIH--QGDAKDGSQGAVVYYGS-NANGEPCGWLLAWCAPTNVTPTKPNRVYVDCGA 130

Query: 261 QGHFPK-HWDYI---YNVRLANSNLHSTDS 184
           Q  F    WD I    +V  A +N    D+
Sbjct: 131 QSKFDTISWDTIKAKLDVGPATTNFTDVDT 160



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>JHD1B_XENLA (Q640I9) JmjC domain-containing histone demethylation protein 1B (EC|
            1.14.11.-) (F-box/LRR-repeat protein 10) (F-box and
            leucine-rich repeat protein 10)
          Length = 1259

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 11/81 (13%)
 Frame = +1

Query: 394  CSWFDVEK-----CPPLSILNIRWVGCIKDTANPILVRDETQIGTGSIVDEAFYRYSITV 558
            CSW  V       CP L  LN++WV  +KD     L+   T    G I + +  R +IT 
Sbjct: 1082 CSWIAVSALCSSCCPLLRTLNVQWVEGLKDAQMRDLLSPPTDNRPGQIDNRSKLR-NITE 1140

Query: 559  LDLQVVD------ELFVRQYP 603
            L L  +D       L +R  P
Sbjct: 1141 LRLAGLDITDASLRLMIRHMP 1161



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>IL4RA_HORSE (Q6WG24) Interleukin-4 receptor alpha chain precursor (IL-4R-alpha)|
           (CD124 antigen)
          Length = 809

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
 Frame = -2

Query: 411 HVKPRAAAKGSTAAVVYRSRIPXXXXSCDWLFTWSVPFIGNNGVYTEIREQGHFPKHWD- 235
           HVKPRA    +  A+ +            WL TWS P+   N +++E+    +  K  D 
Sbjct: 120 HVKPRAPQNLTVHAISHT-----------WLLTWSNPYPLKNHLWSELTYLVNISKEDDP 168

Query: 234 ---YIYNVRLANSNLHSTDS 184
               IYNV   +  L  T S
Sbjct: 169 TDFKIYNVTYMDPTLRVTAS 188



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>YP158_YEAST (Q99299) Protein YPL158C|
          Length = 758

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 22/60 (36%), Positives = 30/60 (50%)
 Frame = -2

Query: 300 FIGNNGVYTEIREQGHFPKHWDYIYNVRLANSNLHSTDSNYGYVSRANIGEGTTMNARAV 121
           F   NGV  +  E G+     DY      +N+N +S  S+ GY S ANI + TT + R V
Sbjct: 49  FAAENGVSRD--EDGNSQTLSDY---TSTSNTNTNSGYSSNGYYSFANISDNTTSSPRIV 103



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>DYHA_CHLRE (Q39610) Dynein alpha chain, flagellar outer arm (DHC alpha)|
          Length = 4499

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 400  WFDVEKCPPLSILNIRWVGCIKDTANPILVRDETQ 504
            WFD  K  P +I N ++V C+  TA   ++    Q
Sbjct: 2464 WFDRAKLTPKNINNTQYVACMNPTAGSFIINPRLQ 2498



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>CARA_ACIAD (Q6F8M7) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase glutamine chain)
          Length = 379

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = -2

Query: 321 LFTWSVPFIGNNGVYTEIREQGHFPKHWD---YIYNVRLANSNLHSTDSNYGYVSRANI 154
           L T + P IGN G   E  E G   K W     I ++ L +SN  S  S   Y+ + N+
Sbjct: 52  LVTLTYPHIGNTGCNEEDTESGRIHKVWANGLIIRDLPLLHSNFRSEQSLAEYLIQHNV 110


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,566,922
Number of Sequences: 219361
Number of extensions: 2185980
Number of successful extensions: 5148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5147
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6086476506
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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