ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags16b23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PHAR1_MOUSE (Q2M3X8) Phosphatase and actin regulator 1 31 3.2
2PHAR1_RAT (P62024) Phosphatase and actin regulator 1 30 5.4
3PHAR1_HUMAN (Q9C0D0) Phosphatase and actin regulator 1 30 5.4
4PP1RA_MACMU (Q5TM61) Serine/threonine-protein phosphatase 1 regu... 29 9.2
5PP1RA_HUMAN (Q96QC0) Serine/threonine-protein phosphatase 1 regu... 29 9.2

>PHAR1_MOUSE (Q2M3X8) Phosphatase and actin regulator 1|
          Length = 580

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 398 DHG*XFASFSTSMPKIQLETEKLQVPRKPCRFLQLQINEGHTSRKPGIPHSL-ALSVKLN 574
           ++G   +S   S+P +  E E + +PR PC +  LQ ++      PG P  L  L VKL+
Sbjct: 179 ENGQSLSSSQLSLPALS-EMEPVPMPRDPCSYEVLQASDIMDGPDPGAPVKLPCLPVKLS 237



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>PHAR1_RAT (P62024) Phosphatase and actin regulator 1|
          Length = 580

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +2

Query: 401 HG*XFASFSTSMPKIQLETEKLQVPRKPCRFLQLQINEGHTSRKPGIPHSL-ALSVKLN 574
           +G   +S   S+P +  E E + +PR PC +  LQ ++      PG P  L  L VKL+
Sbjct: 180 NGQSLSSSQLSLPALS-EMEPVPMPRDPCSYEVLQASDIMDGPDPGAPVKLPCLPVKLS 237



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>PHAR1_HUMAN (Q9C0D0) Phosphatase and actin regulator 1|
          Length = 580

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 398 DHG*XFASFSTSMPKIQLETEKLQVPRKPCRFLQLQINEGHTSRKPGIPHSL-ALSVKLN 574
           ++G   +S   S+P +  E E + +PR PC +  LQ ++      PG P  L  L VKL+
Sbjct: 179 ENGQSLSSSQLSLPALS-EMEPVPMPRDPCSYEVLQPSDIMDGPDPGAPVKLPCLPVKLS 237



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>PP1RA_MACMU (Q5TM61) Serine/threonine-protein phosphatase 1 regulatory subunit|
           10 (MHC class I region proline-rich protein CAT53)
          Length = 940

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -1

Query: 326 GKHHRPHESPRGGNNESSPH 267
           G  HRPHE P GG   SS H
Sbjct: 749 GGGHRPHEGPGGGMGNSSGH 768



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>PP1RA_HUMAN (Q96QC0) Serine/threonine-protein phosphatase 1 regulatory subunit|
           10 (Phosphatase 1 nuclear targeting subunit) (MHC class
           I region proline-rich protein CAT53) (FB19 protein)
           (PP1-binding protein of 114 kDa) (p99)
          Length = 940

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -1

Query: 326 GKHHRPHESPRGGNNESSPH 267
           G  HRPHE P GG   SS H
Sbjct: 748 GGGHRPHEGPGGGMGNSSGH 767


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,173,238
Number of Sequences: 219361
Number of extensions: 1780695
Number of successful extensions: 3680
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3679
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5310515667
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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